CV713098

Overview
NameCV713098
Unique NameCV713098
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length827
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV713098 vs. ExPASy Swiss-Prot
Match: RR8_RHDSA (30S ribosomal protein S8, chloroplastic OS=Rhodomonas salina GN=rps8 PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 3.339e-31
Identity = 65/136 (47.79%), Postives = 99/136 (72.79%), Query Frame = -1
Query:   60 MGKDTIADIITSIRNADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKNKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 467
            M  DTIAD++T +RNA++ R   V++ ST +T+N+  +LL EGFI+N  ++ +  NK+  L+L+L+++   + P   I  LKRISRPGLR+Y N + +PR+L G+GI ++STSRG++TD  AR + +GGE+LCYIW
Sbjct:    1 MVNDTIADMLTRVRNANLARHQIVQVPSTKMTKNIADVLLEEGFIQNFEEVGDGINKQ--LLLSLKYKGKEREPV--ITALKRISRPGLRVYANRKELPRVLGGLGIAVISTSRGVLTDNKARHQGLGGEVLCYIW 132          
BLAST of CV713098 vs. ExPASy Swiss-Prot
Match: RR8_WELMI (30S ribosomal protein S8, chloroplastic OS=Welwitschia mirabilis GN=rps8 PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 5.696e-31
Identity = 68/133 (51.13%), Postives = 98/133 (73.68%), Query Frame = -1
Query:   60 DTIADIITSIRNADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKNKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 458
            DTIA++ITSIRNA +  K  VR+ +T   EN+ +ILL+EGFI++ R+      +K FL+ TL++R+ ++      + LKRIS+PG +IY ++  +P++L GMGI I+STSRGIMTDR AR ++IGGEILCY+W
Sbjct:    2 DTIANLITSIRNAYIVDKKIVRVTATRTNENIGRILLQEGFIKSIRE--HKDGQKSFLIFTLKYRKKKEKR----ITLKRISKPGRKIYSDFPNMPKVLGGMGIAIVSTSRGIMTDREARQKKIGGEILCYVW 128          
BLAST of CV713098 vs. ExPASy Swiss-Prot
Match: RK14_CITSI (50S ribosomal protein L14, chloroplastic OS=Citrus sinensis GN=rpl14 PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.269e-30
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = -3
Query:  625 EVIRAVIVRTCKELRRDNGMIIRYDDNAAVVIDHEGNPKGTRVFGAIARELRQLNFTKIVSLAPEVL 825
            EVIRAVIVRTCKELRRDNGMIIRYDDNAAVVIDHEGNPKGTRVFGAIARELRQLNFTKIVSLAPEVL
Sbjct:   56 EVIRAVIVRTCKELRRDNGMIIRYDDNAAVVIDHEGNPKGTRVFGAIARELRQLNFTKIVSLAPEVL 122          
BLAST of CV713098 vs. ExPASy Swiss-Prot
Match: RR8_SPIMX (30S ribosomal protein S8, chloroplastic OS=Spirogyra maxima GN=rps8 PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 4.822e-30
Identity = 68/135 (50.37%), Postives = 98/135 (72.59%), Query Frame = -1
Query:   63 MGKDTIADIITSIRNADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKNKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYI 467
            M  D I+++ITSIRNA +++  TV I +T  T ++ KILL+EGFI+  R+  EN  +   L+LTL + R  K   +   +L+RIS+PGLR+Y N++ IP++L G+GIVILSTS+GIM DR AR ++IGGEI+CY+
Sbjct:    1 MSNDIISNMITSIRNAILSKTKTVDILATTTTRSIAKILLQEGFIDGLRERQENGRR--LLLLTLHYERKNKS--KITTSLRRISKPGLRVYSNHQEIPKVLGGIGIVILSTSKGIMVDREARHKKIGGEIICYV 131          
BLAST of CV713098 vs. ExPASy Swiss-Prot
Match: RR8_MESVI (30S ribosomal protein S8, chloroplastic OS=Mesostigma viride GN=rps8 PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 1.074e-29
Identity = 64/136 (47.06%), Postives = 99/136 (72.79%), Query Frame = -1
Query:   60 MGKDTIADIITSIRNADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKNKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 467
            M  DTIAD+IT IRNA++  +  V + ++N  + + + LL+EGFIE+      + N  E L+L+L+++  ++ PY  I  L+R+S+ GLR+Y +Y+ IP++L G+GI ILSTS+GI+TD+ AR+++IGGEILCYIW
Sbjct:    1 MVNDTIADMITRIRNANLITQKQVAVIASNTNKGIAQCLLKEGFIESIEYNTNSSNNPE-LILSLKYQGKKRKPY--ITALQRVSKSGLRVYTSYKDIPKVLGGIGIAILSTSQGILTDKQARMQKIGGEILCYIW 133          
BLAST of CV713098 vs. ExPASy Swiss-Prot
Match: RK14_LIRTU (50S ribosomal protein L14, chloroplastic OS=Liriodendron tulipifera GN=rpl14 PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 1.074e-29
Identity = 66/67 (98.51%), Postives = 66/67 (98.51%), Query Frame = -3
Query:  625 EVIRAVIVRTCKELRRDNGMIIRYDDNAAVVIDHEGNPKGTRVFGAIARELRQLNFTKIVSLAPEVL 825
            EVIRAVIVRTCKELRRDNGMIIRYDDNAAVVID EGNPKGTRVFGAIARELRQLNFTKIVSLAPEVL
Sbjct:   56 EVIRAVIVRTCKELRRDNGMIIRYDDNAAVVIDQEGNPKGTRVFGAIARELRQLNFTKIVSLAPEVL 122          
BLAST of CV713098 vs. ExPASy Swiss-Prot
Match: RS8_CYAP8 (30S ribosomal protein S8 OS=Cyanothece sp. (strain PCC 8801) GN=rpsH PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.832e-29
Identity = 66/134 (49.25%), Postives = 96/134 (71.64%), Query Frame = -1
Query:   60 DTIADIITSIRNADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKNKKEFLVLTLRHRRNRKGPYRPILN-LKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 458
            DTI+D++T IRNA   R  T ++ +T +T ++ ++L  EGFIE   +  E   K  +LVLTL+++   +   +PI+N LKR+S+PGLR+Y N + +PR+L G+GI I+STS+GIMTDR AR + +GGEILCYIW
Sbjct:    5 DTISDMLTRIRNACAVRHPTTQVPTTKMTRSIAQVLKEEGFIEGFEETGEGVQK--YLVLTLKYKDKNR---QPIINMLKRVSKPGLRVYSNCKDLPRVLGGIGIAIVSTSKGIMTDREARRQNVGGEILCYIW 133          
BLAST of CV713098 vs. ExPASy Swiss-Prot
Match: RK14_PIPCE (50S ribosomal protein L14, chloroplastic OS=Piper cenocladum GN=rpl14 PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 2.393e-29
Identity = 65/67 (97.01%), Postives = 66/67 (98.51%), Query Frame = -3
Query:  625 EVIRAVIVRTCKELRRDNGMIIRYDDNAAVVIDHEGNPKGTRVFGAIARELRQLNFTKIVSLAPEVL 825
            EVIRAVIVRTCKEL+RDNGMIIRYDDNAAVVID EGNPKGTRVFGAIARELRQLNFTKIVSLAPEVL
Sbjct:   56 EVIRAVIVRTCKELKRDNGMIIRYDDNAAVVIDQEGNPKGTRVFGAIARELRQLNFTKIVSLAPEVL 122          
BLAST of CV713098 vs. ExPASy Swiss-Prot
Match: RK14_ILLOL (50S ribosomal protein L14, chloroplastic OS=Illicium oligandrum GN=rpl14 PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 2.393e-29
Identity = 65/67 (97.01%), Postives = 66/67 (98.51%), Query Frame = -3
Query:  625 EVIRAVIVRTCKELRRDNGMIIRYDDNAAVVIDHEGNPKGTRVFGAIARELRQLNFTKIVSLAPEVL 825
            EVIRAVIVRTCKEL+RDNGMIIRYDDNAAVVID EGNPKGTRVFGAIARELRQLNFTKIVSLAPEVL
Sbjct:   56 EVIRAVIVRTCKELKRDNGMIIRYDDNAAVVIDQEGNPKGTRVFGAIARELRQLNFTKIVSLAPEVL 122          
BLAST of CV713098 vs. ExPASy Swiss-Prot
Match: RK14_EUCGG (50S ribosomal protein L14, chloroplastic OS=Eucalyptus globulus subsp. globulus GN=rpl14 PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 2.393e-29
Identity = 65/67 (97.01%), Postives = 66/67 (98.51%), Query Frame = -3
Query:  625 EVIRAVIVRTCKELRRDNGMIIRYDDNAAVVIDHEGNPKGTRVFGAIARELRQLNFTKIVSLAPEVL 825
            EVIRAVIVRTCKEL+RDNGMIIRYDDNAAVVID EGNPKGTRVFGAIARELRQLNFTKIVSLAPEVL
Sbjct:   56 EVIRAVIVRTCKELKRDNGMIIRYDDNAAVVIDQEGNPKGTRVFGAIARELRQLNFTKIVSLAPEVL 122          
The following BLAST results are available for this feature:
BLAST of CV713098 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RR8_RHDSA3.339e-3147.7930S ribosomal protein S8, chloroplastic OS=Rhodomo... [more]
RR8_WELMI5.696e-3151.1330S ribosomal protein S8, chloroplastic OS=Welwits... [more]
RK14_CITSI1.269e-30100.0050S ribosomal protein L14, chloroplastic OS=Citrus... [more]
RR8_SPIMX4.822e-3050.3730S ribosomal protein S8, chloroplastic OS=Spirogy... [more]
RR8_MESVI1.074e-2947.0630S ribosomal protein S8, chloroplastic OS=Mesosti... [more]
RK14_LIRTU1.074e-2998.5150S ribosomal protein L14, chloroplastic OS=Liriod... [more]
RS8_CYAP81.832e-2949.2530S ribosomal protein S8 OS=Cyanothece sp. (strain... [more]
RK14_PIPCE2.393e-2997.0150S ribosomal protein L14, chloroplastic OS=Piper ... [more]
RK14_ILLOL2.393e-2997.0150S ribosomal protein L14, chloroplastic OS=Illici... [more]
RK14_EUCGG2.393e-2997.0150S ribosomal protein L14, chloroplastic OS=Eucaly... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0002F06_f Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0002F06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV713098 ID=CV713098; Name=CV713098; organism=Citrus sinensis; type=EST; length=827bp
TTTTTTTCTCACAACATAAAAGTAAGCTCCAAATACAATTCAGGATAGCA
GAATAATTACCATATATAACACAAAATTTCTCCACCGATTCTTTCCAGTC
GAGCCGCTCGGTCTGTCATTATACCCCGAGAAGTAGAGAGAATTACAATC
CCCATCCCATCTAAAATTCTAGGAATTCGTCGATAGTTAAAATAGATTCG
TAGACCGGGTCGACTGATTCGTTTTAAATTTAAAATGGGTCTATACGGCC
CTTTCCTATTCCTTCGATGTCGTAGGGTTAAAACCAAAAACTCTTTTTTG
TTTTTGTTTTCCACGAGTTTCCTTGCGTTTTCGATAAAACCCTCTCGCAA
AAGGATTTTAACAACGTTTTCGGTGATGTTAGTAGATGCTATTCGAACCG
TTCCCTTTCTATTCATGTCAGCATTTCGTATAGAAGTTATTATGTCAGCA
ATAGTGTCCTTGCCCATGATAAACTGAAAATTTTGTTGCTTCCAAATTTT
GATATAATCAACATGTTCTTTTTTTTATGAAAATTATTAAAAGTATATGC
GTGAGACATACTCTACTAAATTTTGATTTATCTATTTTATTTTCATACTA
TCACTATATCGCGGTCCCCTCTTATAATACTTCAGGTGCTAATGAAACTA
TTTTAGTAAAATTCAACTGTCTCAATTCCCGGGCGATCGCACCAAAAACT
CGAGTTCCCTTTGGATTTCCTTCGTGATCAATGACAACTGCAGCATTGTC
ATCGTACCGTATTATCATACCGTTATCACGTCTGAGTTCTTTACAAGTAC
GTACAATTACAGCTCTGATCACTTCTG
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