CV713088

Overview
NameCV713088
Unique NameCV713088
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length699
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV713088 vs. ExPASy Swiss-Prot
Match: RS14_PROCL (40S ribosomal protein S14 OS=Procambarus clarkii GN=RPS14 PE=2 SV=1)

HSP 1 Score: 191.045 bits (484), Expect = 5.023e-48
Identity = 99/140 (70.71%), Postives = 112/140 (80.00%), Query Frame = -2
Query:  240 MSRRKTREPKEE-NVTLGPAVRDGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXGAQSALRALARSGMKIGRIEDVTPIPTDST 656
            M+ RK +  KEE  V LGP V DGE VF V HI+AS+NDTF+HVTDLSGRET+VRITGG KVKADRDESSPYAAMLAAQDV+++CK LGI  LHIK+RA           G QSALRALAR+GMKIGRIEDVTP+P+DST
Sbjct:    1 MAPRKGKVQKEEVQVQLGPQVLDGEKVFAVCHIYASYNDTFVHVTDLSGRETIVRITGGQKVKADRDESSPYAAMLAAQDVAEKCKSLGINCLHIKIRATGGNKTKTPGPGGQSALRALARAGMKIGRIEDVTPVPSDST 140          
BLAST of CV713088 vs. ExPASy Swiss-Prot
Match: RS14_SCHPO (40S ribosomal protein S14 OS=Schizosaccharomyces pombe GN=rps14a PE=1 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 2.493e-47
Identity = 92/124 (74.19%), Postives = 107/124 (86.29%), Query Frame = -2
Query:  240 LGPAVRDGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXGAQSALRALARSGMKIGRIEDVTPIPTDST 611
            +GP +R GE VFGVAHIFASFNDTF+H+TDL+G+ET+VR+TGGMKVK DRDESSPYAAMLAAQD + +CKE+GITALHIK+RA           GAQ+ALRALAR+GM+IGRIEDVTPIPTDST
Sbjct:    5 VGPQIRSGELVFGVAHIFASFNDTFVHITDLTGKETIVRVTGGMKVKTDRDESSPYAAMLAAQDAAAKCKEVGITALHIKIRATGGTATKTPGPGAQAALRALARAGMRIGRIEDVTPIPTDST 128          
BLAST of CV713088 vs. ExPASy Swiss-Prot
Match: RS14_DICDI (40S ribosomal protein S14 OS=Dictyostelium discoideum GN=rps14 PE=3 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 3.047e-45
Identity = 96/135 (71.11%), Postives = 106/135 (78.52%), Query Frame = -2
Query:  240 KTREPKEENVTLGPAVRDGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXGAQSALRALARSGMKIGRIEDVTPIPTDST 644
            K  E     +  GP+    E VFGVAHIFASFNDTF+HVTDLS +ET+VR+TGGMKVK DRDESSPYAA +AAQDV+ RCKELG+TALHIKLRA           GAQSALRALARSGM+IGRIEDVTPIPTDST
Sbjct:   11 KVVEALSAKIPCGPS----ELVFGVAHIFASFNDTFVHVTDLSSKETIVRVTGGMKVKTDRDESSPYAATMAAQDVALRCKELGVTALHIKLRATGGNGSKTPGPGAQSALRALARSGMRIGRIEDVTPIPTDST 141          
BLAST of CV713088 vs. ExPASy Swiss-Prot
Match: RS14_KLULA (40S ribosomal protein S14 OS=Kluyveromyces lactis GN=RPS14 PE=3 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 7.506e-44
Identity = 87/119 (73.11%), Postives = 101/119 (84.87%), Query Frame = -2
Query:  240 RDGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXGAQSALRALARSGMKIGRIEDVTPIPTDST 596
            +D   VFGVA IFASFNDTF+HVTDLSGRET+ R+TGGMKVKADRDESSPYAAMLAAQDV+ +CKE+GITA+HIK+RA           G Q+ALRALARSG++IGRIEDVTP+P+DST
Sbjct:    8 KDNSQVFGVARIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDESSPYAAMLAAQDVAAKCKEVGITAVHIKIRATGGTRSKTPGPGGQAALRALARSGLRIGRIEDVTPVPSDST 126          
BLAST of CV713088 vs. ExPASy Swiss-Prot
Match: RS14B_YEAST (40S ribosomal protein S14-B OS=Saccharomyces cerevisiae GN=RPS14B PE=1 SV=2)

HSP 1 Score: 175.637 bits (444), Expect = 2.184e-43
Identity = 85/119 (71.43%), Postives = 101/119 (84.87%), Query Frame = -2
Query:  240 RDGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXGAQSALRALARSGMKIGRIEDVTPIPTDST 596
            RD   VFGVA I+ASFNDTF+HVTDLSG+ET+ R+TGGMKVKADRDESSPYAAMLAAQDV+ +CKE+GITA+H+K+RA           G Q+ALRALARSG++IGRIEDVTP+P+DST
Sbjct:    9 RDNSQVFGVARIYASFNDTFVHVTDLSGKETIARVTGGMKVKADRDESSPYAAMLAAQDVAAKCKEVGITAVHVKIRATGGTRTKTPGPGGQAALRALARSGLRIGRIEDVTPVPSDST 127          
BLAST of CV713088 vs. ExPASy Swiss-Prot
Match: RS14A_YEAST (40S ribosomal protein S14-A OS=Saccharomyces cerevisiae GN=RPS14A PE=1 SV=5)

HSP 1 Score: 175.637 bits (444), Expect = 2.184e-43
Identity = 85/119 (71.43%), Postives = 101/119 (84.87%), Query Frame = -2
Query:  240 RDGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXGAQSALRALARSGMKIGRIEDVTPIPTDST 596
            RD   VFGVA I+ASFNDTF+HVTDLSG+ET+ R+TGGMKVKADRDESSPYAAMLAAQDV+ +CKE+GITA+H+K+RA           G Q+ALRALARSG++IGRIEDVTP+P+DST
Sbjct:    8 RDNSQVFGVARIYASFNDTFVHVTDLSGKETIARVTGGMKVKADRDESSPYAAMLAAQDVAAKCKEVGITAVHVKIRATGGTRTKTPGPGGQAALRALARSGLRIGRIEDVTPVPSDST 126          
BLAST of CV713088 vs. ExPASy Swiss-Prot
Match: RS14_CANAL (40S ribosomal protein S14 OS=Candida albicans GN=RPS14 PE=3 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 3.725e-43
Identity = 87/114 (76.32%), Postives = 99/114 (86.84%), Query Frame = -2
Query:  240 VFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXGAQSALRALARSGMKIGRIEDVTPIPTDST 581
            VFGVA IFASFNDTF+HVTDLSG+ET+ R+TGGMKVKADRDESSPYAAMLAAQDV+ +CKE+GITA+HIKLRA           G QSALRALARSG++IGRIEDVTP+P+DST
Sbjct:   10 VFGVARIFASFNDTFVHVTDLSGKETIARVTGGMKVKADRDESSPYAAMLAAQDVAAKCKEVGITAVHIKLRATGGTKTKTPGPGGQSALRALARSGLRIGRIEDVTPVPSDST 123          
BLAST of CV713088 vs. ExPASy Swiss-Prot
Match: RS14_TRYBB (40S ribosomal protein S14 OS=Trypanosoma brucei brucei GN=RPS14 PE=3 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 8.299e-43
Identity = 87/130 (66.92%), Postives = 102/130 (78.46%), Query Frame = -2
Query:  240 KEENVTLGPAVRDGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXGAQSALRALARSGMKIGRIEDVTPIPTDST 629
            K+E    G +    + V+GV HI+ASFNDTF+HVTD+SGRET  ++TGGMKVKADRDESSPYAAM+AAQDV  RCKE GI ALH+K+RA           GAQ+ALRALAR+GMKIGRIEDVTP+PTDST
Sbjct:    4 KQEVKYYGSSAGKDQLVYGVVHIYASFNDTFVHVTDMSGRETFCKVTGGMKVKADRDESSPYAAMMAAQDVVARCKECGINALHVKMRATGGVGTKSPGPGAQAALRALARAGMKIGRIEDVTPVPTDST 133          
BLAST of CV713088 vs. ExPASy Swiss-Prot
Match: RS14_TORRU (40S ribosomal protein S14 OS=Tortula ruralis GN=RPS14 PE=2 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 1.084e-42
Identity = 91/114 (79.82%), Postives = 99/114 (86.84%), Query Frame = -2
Query:  240 VFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXGAQSALRALARSGMKIGRIEDVTPIPTDST 581
            VFGVAHIFASFNDTF+HVTDLSG+ET + +TGGMKVKADRDE+SPYAAMLAAQDV+QRCKELGITALHI +RA           GAQS LRALARSGM+IGRIEDVTPIPTDST
Sbjct:   11 VFGVAHIFASFNDTFVHVTDLSGKETSLVLTGGMKVKADRDEASPYAAMLAAQDVAQRCKELGITALHINVRATGGNKTKTPGPGAQS-LRALARSGMRIGRIEDVTPIPTDST 123          
BLAST of CV713088 vs. ExPASy Swiss-Prot
Match: RS11_AERPE (30S ribosomal protein S11P OS=Aeropyrum pernix GN=rps11p PE=3 SV=2)

HSP 1 Score: 135.961 bits (341), Expect = 1.918e-31
Identity = 67/113 (59.29%), Postives = 87/113 (76.99%), Query Frame = -2
Query:  240 FGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXGAQSALRALARSGMKIGRIEDVTPIPTDST 578
            +GVAHI++SFN+T +H+TDL+G ET+ R+TGGM VKADR++ SPYAAM+AA   +Q+  E GI A+HIK+RA           GAQ+A+RALAR+G  IGRIEDVTPIP D+T
Sbjct:   10 WGVAHIYSSFNNTHVHITDLTGAETVARVTGGMVVKADREKPSPYAAMIAASRAAQKAMERGIAAIHIKVRAPGGHGPKTPGPGAQAAIRALARAGFIIGRIEDVTPIPHDTT 122          
The following BLAST results are available for this feature:
BLAST of CV713088 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 227
Match NameE-valueIdentityDescription
RS14_PROCL5.023e-4870.7140S ribosomal protein S14 OS=Procambarus clarkii G... [more]
RS14_SCHPO2.493e-4774.1940S ribosomal protein S14 OS=Schizosaccharomyces p... [more]
RS14_DICDI3.047e-4571.1140S ribosomal protein S14 OS=Dictyostelium discoid... [more]
RS14_KLULA7.506e-4473.1140S ribosomal protein S14 OS=Kluyveromyces lactis ... [more]
RS14B_YEAST2.184e-4371.4340S ribosomal protein S14-B OS=Saccharomyces cerev... [more]
RS14A_YEAST2.184e-4371.4340S ribosomal protein S14-A OS=Saccharomyces cerev... [more]
RS14_CANAL3.725e-4376.3240S ribosomal protein S14 OS=Candida albicans GN=R... [more]
RS14_TRYBB8.299e-4366.9240S ribosomal protein S14 OS=Trypanosoma brucei br... [more]
RS14_TORRU1.084e-4279.8240S ribosomal protein S14 OS=Tortula ruralis GN=RP... [more]
RS11_AERPE1.918e-3159.2930S ribosomal protein S11P OS=Aeropyrum pernix GN=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0002F01_f Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0002F01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV713088 ID=CV713088; Name=CV713088; organism=Citrus sinensis; type=EST; length=699bp
TTTTTTTTTTTTTGGGAGAAATGGATTAGTCTTGCCACTGTATAAACTTA
ATTGATCCGAAAGGCTAACACAAAGGAATCCAAGACTACAGACATTCCAA
ACAACAAAATTGGGAAATAACTCTTGCATCTAACAGAAGAGAGTGAAACT
CTCTGTAACCACGGCATCATCTTGAACGTTATGGATGGGTGTGAGGAAAA
GAATTACAACCTTCTACCCCTTCTACCACCCTTTCTGCGGGTACTGTCGG
TGGGAATTGGAGTCACATCCTCTATGCGGCCAATCTTCATTCCAGAACGA
GCAAGAGCTCTAAGTGCTGACTGAGCACCTGGACCAGGAGTTTTAGTTTT
GTTACCCCCAGTAGCCCGGAGCTTAATATGAAGAGCAGTAATGCCAAGCT
CCTTGCATCGTTGAGAAACATCTTGTGCTGCAAGCATAGCTGCATAAGGG
GAGGATTCATCCCTGTCAGCTTTAACCTTCATACCACCAGTAATGCGCAC
AAGAGTTTCTCTTCCAGACAAGTCAGTCACATGAATGAAAGTGTCATTAA
ACGACGCAAAAATGTGGGCAACGCCAAATACATGCTCGCCATCTCTAACG
GCAGGTCCAAGAGTAACATTTTCCTCCTTAGGCTCTCTGGTCTTTCTTCT
TGACATGGCTGCTGATGACACGGAGAGTTGATCACAAAAGCCTCGACCT
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