CV713088

Overview
NameCV713088
Unique NameCV713088
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length699
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV713088 vs. ExPASy Swiss-Prot
Match: RS11_THEVO (30S ribosomal protein S11P OS=Thermoplasma volcanium GN=rps11p PE=3 SV=2)

HSP 1 Score: 118.627 bits (296), Expect = 3.168e-26
Identity = 64/112 (57.14%), Postives = 81/112 (72.32%), Query Frame = -2
Query:  240 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXGAQSALRALARSGMKIGRIEDVTPIPTDST 575
            G+AHI+AS N+T IHVTD +G ET+  ++GGM VK DRD++SPYAAM AA  VS+  KE  IT L IK+RA           GAQ+A+RAL+R+G+KI RIE+VTPIP D T
Sbjct:   10 GIAHIYASQNNTIIHVTDPTGAETIAMVSGGMVVKNDRDQASPYAAMKAADMVSETLKEHEITDLIIKVRAPGGNKSKIPGPGAQAAIRALSRAGLKIVRIEEVTPIPHDGT 121          
BLAST of CV713088 vs. ExPASy Swiss-Prot
Match: RS11_CENSY (30S ribosomal protein S11P OS=Cenarchaeum symbiosum GN=rps11p PE=3 SV=2)

HSP 1 Score: 118.242 bits (295), Expect = 4.138e-26
Identity = 60/122 (49.18%), Postives = 81/122 (66.39%), Query Frame = -2
Query:  240 PAVRDGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXGAQSALRALARSGMKIGRIEDVTPIPTDST 605
            P     +   G+AHI++S+N+T IH+TDL+G ET+   +GG+ V ADR ESSP+AAM AA  V +  +  G T  HI++RA           GAQ+A+RALAR G +IGRI+DVTPIP D+T
Sbjct:   66 PETTPADEKLGIAHIYSSYNNTIIHMTDLTGAETVSISSGGVHVNADRYESSPFAAMKAANKVIESARAKGFTGFHIRVRAVGGVGSRVPGPGAQAAIRALARGGFRIGRIDDVTPIPHDTT 187          
BLAST of CV713088 vs. ExPASy Swiss-Prot
Match: RS11_METBU (30S ribosomal protein S11P OS=Methanococcoides burtonii (strain DSM 6242) GN=rps11p PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 5.404e-26
Identity = 60/114 (52.63%), Postives = 80/114 (70.18%), Query Frame = -2
Query:  240 VFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXGAQSALRALARSGMKIGRIEDVTPIPTDST 581
            ++GVAHI  SFN+T I VTDL+G ET+ + +GGM VKA RDESSPY AM  A  ++   ++ G+  +HIK+RA           GAQ+A+RA AR+G++IGRIEDVTP+P D T
Sbjct:    5 IWGVAHIKCSFNNTIITVTDLTGAETIAKSSGGMVVKAARDESSPYTAMQMATQLADILRDKGLEGVHIKVRAPGGNKQRSPGPGAQAAIRAFARAGVRIGRIEDVTPVPHDGT 118          
BLAST of CV713088 vs. ExPASy Swiss-Prot
Match: RS11_NATPD (30S ribosomal protein S11P OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rps11p PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 9.218e-26
Identity = 57/113 (50.44%), Postives = 83/113 (73.45%), Query Frame = -2
Query:  240 FGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXGAQSALRALARSGMKIGRIEDVTPIPTDST 578
            +G+A+++ASFN+T I VTD++G ET+V+ +GG  VK +RDE+SPYAAM  A+ V++  K+ GI  +H+++R            GAQ+ +RALAR+G++IGRIEDVTPIP D T
Sbjct:    7 WGIANVYASFNNTIITVTDMTGAETIVKSSGGTVVKQNRDEASPYAAMQMAEVVAEDVKDAGIDGVHVRVRGPGGNQQQNPGPGAQATIRALARAGLEIGRIEDVTPIPHDGT 119          
BLAST of CV713088 vs. ExPASy Swiss-Prot
Match: RS11_METAC (30S ribosomal protein S11P OS=Methanosarcina acetivorans GN=rps11p PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.204e-25
Identity = 59/113 (52.21%), Postives = 80/113 (70.80%), Query Frame = -2
Query:  240 FGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXGAQSALRALARSGMKIGRIEDVTPIPTDST 578
            + VAHI +SFN+T I VTD++G ET+ + +GGM VKA RDESSPY AM  A  ++ + K+ GI  +HI++RA           GAQ+A+RA AR+G++IGRIEDVTP+P D T
Sbjct:    6 WAVAHIKSSFNNTIITVTDITGAETIAKSSGGMVVKAARDESSPYTAMQMAGQLADQLKDKGINGIHIRVRAPGGNKQRSPGPGAQAAIRAFARAGIRIGRIEDVTPVPHDGT 118          
BLAST of CV713088 vs. ExPASy Swiss-Prot
Match: RS11_CALMQ (30S ribosomal protein S11P OS=Caldivirga maquilingensis (strain DSMZ 13496 / IC-167) GN=rps11p PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.204e-25
Identity = 60/112 (53.57%), Postives = 80/112 (71.43%), Query Frame = -2
Query:  243 FGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXGAQSALRALARSGMKIGRIEDVTPIPTDS 578
            +G+A+I+AS N+T I +TDL+G ET+ R++GG  VKADRD+ SPYAAM+AA   +Q     GI A+H+K+R            GA +A+RALAR+GM IGRIEDVTPIP D+
Sbjct:    9 WGIAYIYASSNNTMIIITDLTGSETVARVSGGQVVKADRDKPSPYAAMMAAYKAAQIAMARGINAVHVKVRGPGGYGLKVPGPGAVAAIRALARAGMIIGRIEDVTPIPHDT 120          
BLAST of CV713088 vs. ExPASy Swiss-Prot
Match: RS11_METMA (30S ribosomal protein S11P OS=Methanosarcina mazei GN=rps11p PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.682e-25
Identity = 58/113 (51.33%), Postives = 80/113 (70.80%), Query Frame = -2
Query:  240 FGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXGAQSALRALARSGMKIGRIEDVTPIPTDST 578
            + VAHI +SFN+T I VTD++G ET+ + +GGM VKA RDESSPY AM  A  ++ + ++ GI  +HI++RA           GAQ+A+RA AR+G++IGRIEDVTP+P D T
Sbjct:    6 WAVAHIKSSFNNTIITVTDITGAETIAKSSGGMVVKAARDESSPYTAMQMAGQLADQLRDKGINGIHIRVRAPGGNKQRSPGPGAQAAIRAFARAGIRIGRIEDVTPVPHDGT 118          
BLAST of CV713088 vs. ExPASy Swiss-Prot
Match: RS11_SULTO (30S ribosomal protein S11P OS=Sulfolobus tokodaii GN=rps11p PE=3 SV=2)

HSP 1 Score: 115.161 bits (287), Expect = 3.503e-25
Identity = 60/112 (53.57%), Postives = 79/112 (70.54%), Query Frame = -2
Query:  243 FGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXGAQSALRALARSGMKIGRIEDVTPIPTDS 578
            +G+A ++AS N+T I +TD++G E + R +GGM VKADR++ SPYAAMLAA   +    + GI+A+HIK+RA           GAQ A+RALAR+G  IGRIEDVTPIP DS
Sbjct:    9 WGIARVYASQNNTLITITDITGAEIISRASGGMVVKADREKPSPYAAMLAANKAATEAFDKGISAIHIKVRAQGGYGSKTPGPGAQPAIRALARAGFIIGRIEDVTPIPHDS 120          
BLAST of CV713088 vs. ExPASy Swiss-Prot
Match: RS11_METBF (30S ribosomal protein S11P OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rps11p PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.575e-25
Identity = 58/113 (51.33%), Postives = 80/113 (70.80%), Query Frame = -2
Query:  240 FGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXGAQSALRALARSGMKIGRIEDVTPIPTDST 578
            + VAHI +SFN+T I VTD++G ET+ + +GGM VKA RDESSPY AM  A  ++ + ++ GI  +HI++RA           GAQ+A+RA AR+G++IGRIEDVTP+P D T
Sbjct:    6 WAVAHIKSSFNNTIITVTDITGAETIAKSSGGMVVKAARDESSPYTAMQMAGQLADQLRDKGIHGIHIRVRAPGGNKQRSPGPGAQAAIRAFARAGIRIGRIEDVTPVPHDGT 118          
BLAST of CV713088 vs. ExPASy Swiss-Prot
Match: RS11_PICTO (30S ribosomal protein S11P OS=Picrophilus torridus GN=rps11p PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 7.803e-25
Identity = 63/112 (56.25%), Postives = 80/112 (71.43%), Query Frame = -2
Query:  240 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXGAQSALRALARSGMKIGRIEDVTPIPTDST 575
            G+AHI+AS N+T I VTD +G ET+ + +GGM VK DRDE+SPYAAM AA  VS++ +E  IT L I++RA           GAQSA+RAL+R+G KI RIE+VTPIP D T
Sbjct:    5 GIAHIYASQNNTIILVTDPTGAETIAKSSGGMVVKNDRDEASPYAAMRAADMVSEKLREREITDLIIRVRAPGGSKSKIPGPGAQSAIRALSRAGFKILRIEEVTPIPHDGT 116          
The following BLAST results are available for this feature:
BLAST of CV713088 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 227
Match NameE-valueIdentityDescription
RS11_THEVO3.168e-2657.1430S ribosomal protein S11P OS=Thermoplasma volcani... [more]
RS11_CENSY4.138e-2649.1830S ribosomal protein S11P OS=Cenarchaeum symbiosu... [more]
RS11_METBU5.404e-2652.6330S ribosomal protein S11P OS=Methanococcoides bur... [more]
RS11_NATPD9.218e-2650.4430S ribosomal protein S11P OS=Natronomonas pharaon... [more]
RS11_METAC1.204e-2552.2130S ribosomal protein S11P OS=Methanosarcina aceti... [more]
RS11_CALMQ1.204e-2553.5730S ribosomal protein S11P OS=Caldivirga maquiling... [more]
RS11_METMA2.682e-2551.3330S ribosomal protein S11P OS=Methanosarcina mazei... [more]
RS11_SULTO3.503e-2553.5730S ribosomal protein S11P OS=Sulfolobus tokodaii ... [more]
RS11_METBF4.575e-2551.3330S ribosomal protein S11P OS=Methanosarcina barke... [more]
RS11_PICTO7.803e-2556.2530S ribosomal protein S11P OS=Picrophilus torridus... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0002F01_f Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0002F01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV713088 ID=CV713088; Name=CV713088; organism=Citrus sinensis; type=EST; length=699bp
TTTTTTTTTTTTTGGGAGAAATGGATTAGTCTTGCCACTGTATAAACTTA
ATTGATCCGAAAGGCTAACACAAAGGAATCCAAGACTACAGACATTCCAA
ACAACAAAATTGGGAAATAACTCTTGCATCTAACAGAAGAGAGTGAAACT
CTCTGTAACCACGGCATCATCTTGAACGTTATGGATGGGTGTGAGGAAAA
GAATTACAACCTTCTACCCCTTCTACCACCCTTTCTGCGGGTACTGTCGG
TGGGAATTGGAGTCACATCCTCTATGCGGCCAATCTTCATTCCAGAACGA
GCAAGAGCTCTAAGTGCTGACTGAGCACCTGGACCAGGAGTTTTAGTTTT
GTTACCCCCAGTAGCCCGGAGCTTAATATGAAGAGCAGTAATGCCAAGCT
CCTTGCATCGTTGAGAAACATCTTGTGCTGCAAGCATAGCTGCATAAGGG
GAGGATTCATCCCTGTCAGCTTTAACCTTCATACCACCAGTAATGCGCAC
AAGAGTTTCTCTTCCAGACAAGTCAGTCACATGAATGAAAGTGTCATTAA
ACGACGCAAAAATGTGGGCAACGCCAAATACATGCTCGCCATCTCTAACG
GCAGGTCCAAGAGTAACATTTTCCTCCTTAGGCTCTCTGGTCTTTCTTCT
TGACATGGCTGCTGATGACACGGAGAGTTGATCACAAAAGCCTCGACCT
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