CV713074

Overview
NameCV713074
Unique NameCV713074
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length750
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV713074 vs. ExPASy Swiss-Prot
Match: FABG_RICCN (3-oxoacyl-[acyl-carrier-protein] reductase OS=Rickettsia conorii GN=fabG PE=3 SV=2)

HSP 1 Score: 162.925 bits (411), Expect = 1.667e-39
Identity = 85/159 (53.46%), Postives = 110/159 (69.18%), Query Frame = -1
Query:  274 NAGITRDTLLMRMKKSQWQDVIDLNLTGVFLCTQXXXXXXXXXXKGRIINIASVVGLVGNIGQANYSAAKAGVIGLTKTVAKEYASRNINVNAIAPGFIASDMTAKLGEDLEKKILEKIPLGRYGQPEEVAGLVEFLALNPAAGYITGQVLTIDGGMVM 750
            NAGIT DTL +RMK   +  VID+NL   F+  +           GRIINI+S+VG+ GN GQANY A+KAG+IG+TK+++ E A+R I VN +APGFI SDMT KL E   + I++KIPLG YG PE+VA  V FLA +  A YITGQ + ++GGM+M
Sbjct:   83 NAGITSDTLAIRMKDEDFDKVIDINLKANFILNREAIKKMIQNRYGRIINISSIVGISGNPGQANYCASKAGLIGMTKSLSYEVATRGITVNTVAPGFIKSDMTDKLNEKQREAIVQKIPLGTYGMPEDVAHAVAFLA-SDQASYITGQTIHVNGGMLM 240          
BLAST of CV713074 vs. ExPASy Swiss-Prot
Match: FABG_CHLMU (3-oxoacyl-[acyl-carrier-protein] reductase OS=Chlamydia muridarum GN=fabG PE=3 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 8.274e-39
Identity = 82/157 (52.23%), Postives = 109/157 (69.43%), Query Frame = -1
Query:  280 NAGITRDTLLMRMKKSQWQDVIDLNLTGVFLCTQXXXXXXXXXXKGRIINIASVVGLVGNIGQANYSAAKAGVIGLTKTVAKEYASRNINVNAIAPGFIASDMTAKLGEDLEKKILEKIPLGRYGQPEEVAGLVEFLALNPAAGYITGQVLTIDGGM 750
            NAGITRD+LLMRM + +W  VID NL  ++               G I+NI+S+VGL G+ GQ NY+AAKAG+IG +K ++KE  S+NI VN IAPGFI +DMT  L ++L+ + L+ +PLGR G PEE+A    FLA N ++ YITGQVL++DGGM
Sbjct:   92 NAGITRDSLLMRMSEEEWSSVIDTNLGSIYNVCSAVIRPMIKARSGAIVNISSIVGLRGSPGQTNYAAAKAGIIGFSKALSKEVGSKNIRVNCIAPGFIDTDMTKGLSDNLKNEWLKGVPLGRVGTPEEIAMAALFLASNQSS-YITGQVLSVDGGM 247          
BLAST of CV713074 vs. ExPASy Swiss-Prot
Match: FABG_CHLTR (3-oxoacyl-[acyl-carrier-protein] reductase OS=Chlamydia trachomatis GN=fabG PE=1 SV=3)

HSP 1 Score: 158.688 bits (400), Expect = 3.144e-38
Identity = 81/157 (51.59%), Postives = 107/157 (68.15%), Query Frame = -1
Query:  280 NAGITRDTLLMRMKKSQWQDVIDLNLTGVFLCTQXXXXXXXXXXKGRIINIASVVGLVGNIGQANYSAAKAGVIGLTKTVAKEYASRNINVNAIAPGFIASDMTAKLGEDLEKKILEKIPLGRYGQPEEVAGLVEFLALNPAAGYITGQVLTIDGGM 750
            NAGITRD LLMRM + +W  VI+ NL  ++               G IINI+S+VGL G+ GQ NY+AAKAG+IG +K ++KE  S+NI VN IAPGFI +DMT  L ++L+ + L+ +PLGR G PEE+A    FLA +  + YITGQVL++DGGM
Sbjct:   92 NAGITRDALLMRMSEEEWSSVINTNLGSIYNVCSAVIRPMIKARSGAIINISSIVGLRGSPGQTNYAAAKAGIIGFSKALSKEVGSKNIRVNCIAPGFIDTDMTKSLNDNLKNEWLKGVPLGRVGMPEEIAKAALFLA-SDGSSYITGQVLSVDGGM 247          
BLAST of CV713074 vs. ExPASy Swiss-Prot
Match: FABG_PSEAE (3-oxoacyl-[acyl-carrier-protein] reductase OS=Pseudomonas aeruginosa GN=fabG PE=3 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 1.195e-37
Identity = 82/159 (51.57%), Postives = 109/159 (68.55%), Query Frame = -1
Query:  274 NAGITRDTLLMRMKKSQWQDVIDLNLTGVFLCTQXXXXXXXXXXKGRIINIASVVGLVGNIGQANYSAAKAGVIGLTKTVAKEYASRNINVNAIAPGFIASDMTAKLGEDLEKKILEKIPLGRYGQPEEVAGLVEFLALNPAAGYITGQVLTIDGGMVM 750
            NAGITRD LL+RMK  +W DV++ NL  ++  ++           GRIINI SVVG +GN GQ NY+AAKAG+ G T+ +A+E  SR I VNA+APGFI +DMT +L E   + +L +IPLGR GQ EE+A +V FLA + AA Y+TG  + ++GGM M
Sbjct:   89 NAGITRDNLLVRMKDDEWFDVVNTNLNSLYRLSKAVLRGMTKARWGRIINIGSVVGAMGNAGQTNYAAAKAGLEGFTRALAREVGSRAITVNAVAPGFIDTDMTRELPEAQREALLGQIPLGRLGQAEEIAKVVGFLASDGAA-YVTGATVPVNGGMYM 246          
BLAST of CV713074 vs. ExPASy Swiss-Prot
Match: FABG_HAEIN (3-oxoacyl-[acyl-carrier-protein] reductase OS=Haemophilus influenzae GN=fabG PE=3 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 1.195e-37
Identity = 81/159 (50.94%), Postives = 107/159 (67.30%), Query Frame = -1
Query:  274 NAGITRDTLLMRMKKSQWQDVIDLNLTGVFLCTQXXXXXXXXXXKGRIINIASVVGLVGNIGQANYSAAKAGVIGLTKTVAKEYASRNINVNAIAPGFIASDMTAKLGEDLEKKILEKIPLGRYGQPEEVAGLVEFLALNPAAGYITGQVLTIDGGMVM 750
            NAGITRD LLMRMK  +W D++  NLT V+  ++           GRIINI SVVG  GN GQ NY AAKAGV+G +K++AKE A+R I VN +APGFIA+DMT  L ++ +  IL  +P GR G+ +++A  V FLA +  AGYITG  L ++GG+ +
Sbjct:   84 NAGITRDNLLMRMKDEEWFDIMQTNLTSVYHLSKAMLRSMMKKRFGRIINIGSVVGSTGNPGQTNYCAAKAGVVGFSKSLAKEVAARGITVNVVAPGFIATDMTEVLTDEQKAGILSNVPAGRLGEAKDIAKAVAFLA-SDDAGYITGTTLHVNGGLYL 241          
BLAST of CV713074 vs. ExPASy Swiss-Prot
Match: FABG_CHLPN (3-oxoacyl-[acyl-carrier-protein] reductase OS=Chlamydia pneumoniae GN=fabG PE=3 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.560e-37
Identity = 79/157 (50.32%), Postives = 106/157 (67.52%), Query Frame = -1
Query:  280 NAGITRDTLLMRMKKSQWQDVIDLNLTGVFLCTQXXXXXXXXXXKGRIINIASVVGLVGNIGQANYSAAKAGVIGLTKTVAKEYASRNINVNAIAPGFIASDMTAKLGEDLEKKILEKIPLGRYGQPEEVAGLVEFLALNPAAGYITGQVLTIDGGM 750
            NAGITRD LLMRM +  WQ VI  NLT ++               G IIN+AS+V  +G+ GQ NY+AAKAG+I  TK++AKE A+RNI VN +APGFI +DMT+ L ++L+ + L+ IPLGR G PE+VA +  FLA +  + Y+T Q L +DGG+
Sbjct:   91 NAGITRDNLLMRMSEDDWQSVISTNLTSLYYTCSSVIRHMIKARSGSIINVASIVAKIGSAGQTNYAAAKAGIIAFTKSLAKEVAARNIRVNCLAPGFIETDMTSVLNDNLKAEWLKSIPLGRAGTPEDVARVALFLA-SQLSSYMTAQTLVVDGGL 246          
BLAST of CV713074 vs. ExPASy Swiss-Prot
Match: NODG_AZOBR (Nodulation protein G OS=Azospirillum brasilense GN=nodG PE=3 SV=2)

HSP 1 Score: 152.91 bits (385), Expect = 1.725e-36
Identity = 77/157 (49.04%), Postives = 103/157 (65.61%), Query Frame = -1
Query:  280 NAGITRDTLLMRMKKSQWQDVIDLNLTGVFLCTQXXXXXXXXXXKGRIINIASVVGLVGNIGQANYSAAKAGVIGLTKTVAKEYASRNINVNAIAPGFIASDMTAKLGEDLEKKILEKIPLGRYGQPEEVAGLVEFLALNPAAGYITGQVLTIDGGM 750
            NAGITRD    +M K+QW  VI  NL+ +F  TQ           GRIINI+SV G+ G  GQ NYSAAKAGVIG TK +A E A++ + VNAIAPG+I +DM   + ED+ + I + +P+ R G+P+E+ G V +LA +  AGY+TG  L I+GG+
Sbjct:   88 NAGITRDKFFAKMDKAQWDAVIATNLSSLFNVTQQVSPKMAERGWGRIINISSVNGVKGQAGQTNYSAAKAGVIGFTKALAAELATKGVTVNAIAPGYIGTDMVMAIREDIRQAITDSVPMKRLGRPDEIGGAVSYLA-SEIAGYVTGSTLNINGGL 243          
BLAST of CV713074 vs. ExPASy Swiss-Prot
Match: NODG_RHIS3 (Nodulation protein G OS=Rhizobium sp. (strain N33) GN=nodG PE=3 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 6.556e-36
Identity = 79/159 (49.69%), Postives = 105/159 (66.04%), Query Frame = -1
Query:  274 NAGITRDTLLMRMKKSQWQDVIDLNLTGVFLCTQXXXXXXXXXXKGRIINIASVVGLVGNIGQANYSAAKAGVIGLTKTVAKEYASRNINVNAIAPGFIASDMTAKLGEDLEKKILEKIPLGRYGQPEEVAGLVEFLALNPAAGYITGQVLTIDGGMVM 750
            NAGIT+D L +RM  + W  V+++NLT VF  T+           GRIINI SVVG+ GN GQ NY A+KAG+IG +K++A+E A+RNI VN +APGFI S MT KL +  ++ I+  IP  R G   EVA  V +LA N AA Y+TGQ + ++GG+ M
Sbjct:   87 NAGITKDGLFVRMSDADWDTVLEVNLTAVFRLTRELTHPMMRRRHGRIINITSVVGVTGNPGQTNYCASKAGMIGFSKSLAQEIATRNITVNCVAPGFIESAMTDKLNDKQKEAIMAAIPTRRMGTSVEVASAVAYLASNEAA-YVTGQTIHVNGGLAM 244          
BLAST of CV713074 vs. ExPASy Swiss-Prot
Match: DHB8_RAT (Estradiol 17-beta-dehydrogenase 8 OS=Rattus norvegicus GN=Hsd17b8 PE=2 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.615e-34
Identity = 78/159 (49.06%), Postives = 102/159 (64.15%), Query Frame = -1
Query:  274 AGITRDTLLMRMKKSQWQDVIDLNLTGVFLCTQXXXXXXXXXXK-GRIINIASVVGLVGNIGQANYSAAKAGVIGLTKTVAKEYASRNINVNAIAPGFIASDMTAKLGEDLEKKILEKIPLGRYGQPEEVAGLVEFLALNPAAGYITGQVLTIDGGMVM 747
            AGITRD  L+ M +  W  VI +NL G FL TQ            G IINI+S+VG VGNIGQ NY+++KAGVIGLT+T A+E     I  N++ PGFIA+ MT K+ E ++ K+   IPLG  G PE+VA +V FLA +  +GYITG  + + GG+ M
Sbjct:  102 AGITRDEFLLHMSEEDWDRVIAVNLKGTFLVTQAAAQALVSSGGRGSIINISSIVGKVGNIGQTNYASSKAGVIGLTQTAARELGRHGIRCNSVLPGFIATPMTQKMPEKVKDKVTAMIPLGHMGDPEDVADVVAFLA-SEDSGYITGASVEVSGGLFM 259          
BLAST of CV713074 vs. ExPASy Swiss-Prot
Match: NODG_RHIME (Nodulation protein G OS=Rhizobium meliloti GN=nodG PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 2.109e-34
Identity = 76/159 (47.80%), Postives = 103/159 (64.78%), Query Frame = -1
Query:  274 NAGITRDTLLMRMKKSQWQDVIDLNLTGVFLCTQXXXXXXXXXXKGRIINIASVVGLVGNIGQANYSAAKAGVIGLTKTVAKEYASRNINVNAIAPGFIASDMTAKLGEDLEKKILEKIPLGRYGQPEEVAGLVEFLALNPAAGYITGQVLTIDGGMVM 750
            NAGIT+D L + M    W  V+++NLT +F  T+           GRIIN+ SV G +GN GQ NY A+KAG+IG +K++A+E A+RNI VN +APGFI S MT KL    ++KI+  IP+ R G   EVA  V +LA + AA Y+TGQ + ++GGM M
Sbjct:   87 NAGITKDGLFLHMADPDWDIVLEVNLTAMFRLTREITQQMIRRRNGRIINVTSVAGAIGNPGQTNYCASKAGMIGFSKSLAQEIATRNITVNCVAPGFIESAMTDKLNHKQKEKIMVAIPIHRMGTGTEVASAVAYLASDHAA-YVTGQTIHVNGGMAM 244          
The following BLAST results are available for this feature:
BLAST of CV713074 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 214
Match NameE-valueIdentityDescription
FABG_RICCN1.667e-3953.463-oxoacyl-[acyl-carrier-protein] reductase OS=Rick... [more]
FABG_CHLMU8.274e-3952.233-oxoacyl-[acyl-carrier-protein] reductase OS=Chla... [more]
FABG_CHLTR3.144e-3851.593-oxoacyl-[acyl-carrier-protein] reductase OS=Chla... [more]
FABG_PSEAE1.195e-3751.573-oxoacyl-[acyl-carrier-protein] reductase OS=Pseu... [more]
FABG_HAEIN1.195e-3750.943-oxoacyl-[acyl-carrier-protein] reductase OS=Haem... [more]
FABG_CHLPN1.560e-3750.323-oxoacyl-[acyl-carrier-protein] reductase OS=Chla... [more]
NODG_AZOBR1.725e-3649.04Nodulation protein G OS=Azospirillum brasilense GN... [more]
NODG_RHIS36.556e-3649.69Nodulation protein G OS=Rhizobium sp. (strain N33)... [more]
DHB8_RAT1.615e-3449.06Estradiol 17-beta-dehydrogenase 8 OS=Rattus norveg... [more]
NODG_RHIME2.109e-3447.80Nodulation protein G OS=Rhizobium meliloti GN=nodG... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS08_0002E16_r Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0002E16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV713074 ID=CV713074; Name=CV713074; organism=Citrus sinensis; type=EST; length=750bp
TTTTTTTTTTTTTTTTTATGTATCACCCAAAAACTACATTCCATAATGCC
AATTTGAAGTACAACAAATGTTACGCGCCTCATGTTTGGTTTTTGCAACA
TGCTTAGCTTAAATTCTACCAAAACTTACCTGAATTTTTATTTCATAACA
ACACTTTGGCAACATTTCCTCATAGGATCATAAAGCAGACAAAGTTTCAA
CCCAGTCGATCTTACATATGAGAGCTACAGGTCAGAACTGAAACTAAACC
AGGCAGAATGGGTCACTGACCTACATAACCATTCCTCCGTCAATAGTAAG
CACCTGTCCAGTAATGTAACCGGCAGCGGGATTGAGGGCCAAGAATTCCA
CCAGTCCAGCAACTTCTTCAGGTTGGCCATACCTTCCTAAGGGGATTTTC
TCCAAGATCTTCTTTTCTAGGTCTTCGCCAAGCTTGGCGGTCATATCAGA
CGCGATGAATCCTGGTGCAATAGCATTGACATTAATGTTTCTGCTTGCAT
ATTCCTTTGCAACAGTTTTTGTCAGGCCAATAACACCTGCTTTTGCAGCA
CTGTAATTGGCTTGGCCAATATTTCCAACCAGACCAACAACTGATGCTAT
ATTGATTATTCTTCCCTTTTTCTTCTTCATCATGATTTTGGCTGCTGCCT
GTGTACACAGGAATACACCTGTAAGATTCAGATCGATAACGTCCTGCCAT
TGTGACTTCTTCATTCTCATGAGCAATGTATCTCTAGTGATTCCTGCATT
back to top