CV713074

Overview
NameCV713074
Unique NameCV713074
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length750
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV713074 vs. ExPASy Swiss-Prot
Match: YGCW_ECOLI (Uncharacterized oxidoreductase ygcW OS=Escherichia coli (strain K12) GN=ygcW PE=3 SV=2)

HSP 1 Score: 101.679 bits (252), Expect = 4.561e-21
Identity = 54/161 (33.54%), Postives = 86/161 (53.42%), Query Frame = -1
Query:  274 NAGITRDTLLMRMKKSQWQDVIDLNLTGVFLCTQXXXXXXXXXXKGRIINIASVVGLVGNIGQANYSAAKAGVIGLTKTVAKEYASRNINVNAIAPGFIASDMT--AKLGEDLEKKILEKIPLGRYGQPEEVAGLVEFLALNPAAGYITGQVLTIDGGMVM 750
            NAGI +   ++   ++ W  +ID+NLT  F  +            G+IINI S+   +G      YSA K  + G TK    E    NI VN IAPG+ A+D+T   +   +  +++L+ IP  R+G  +++ G   FLA +PA+ Y+ G +L +DGG ++
Sbjct:  101 NAGICKLNKVLDFGRADWDPMIDVNLTAAFELSYEAAKIMIPQKSGKIINICSLFSYLGGQWSPAYSATKHALAGFTKAYCDELGQYNIQVNGIAPGYYATDITLATRSNPETNQRVLDHIPANRWGDTQDLMGAAVFLA-SPASNYVNGHLLVVDGGYLV 260          
BLAST of CV713074 vs. ExPASy Swiss-Prot
Match: DHK1_STRVN (Granaticin polyketide synthase putative ketoacyl reductase 1 OS=Streptomyces violaceoruber GN=gra-orf5 PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.016e-20
Identity = 65/170 (38.24%), Postives = 88/170 (51.76%), Query Frame = -1
Query:  280 NAGITRDTLLMRMKKSQWQDVIDLNLTGVFLCTQXXXXXXXXXXK--GRIINIASVVGLVGNIGQANYSAAKAGVIGLTKTVAKEYASRNINVNAIAPGFIASDMTAKL-----------GEDLEKKILEKIPLGRYGQPEEVAGLVEFLALNPAAGYITGQVLTIDGGM 750
            NAG +       +    W DVI  NLT VFL T+          K  GRIINIAS  G  G +    YSA+K GV+GLTK +  E A   I VNA+ PGF+ + M  ++            E+   +I  ++PLGRY +  EVA +VE+L  + AA  +T Q L + GG+
Sbjct:  101 NAGRSGGGATAEIADELWLDVITTNLTSVFLMTKEVLNAGGMLAKKRGRIINIASTGGKQGVVHAVPYSASKHGVVGLTKALGLELARTGITVNAVCPGFVETPMAERVREHYAGIWQVSEEETFDRITNRVPLGRYVETREVAAMVEYLVADDAAA-VTAQALNVCGGL 269          
BLAST of CV713074 vs. ExPASy Swiss-Prot
Match: BACC2_BACSU (Bacilysin biosynthesis oxidoreductase bacC OS=Bacillus subtilis GN=bacC PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.016e-20
Identity = 61/164 (37.20%), Postives = 93/164 (56.71%), Query Frame = -1
Query:  283 NAGITRDTLLMRMKKSQWQDVIDLNLTGVFLCTQXXXXXXXXXXKGRIINIASVVGLVGNIGQANYSAAKAGVIGLTKTVAKEYASRNINVNAIAPGFIASDMTAK--------LGEDLEKKILEKIPLGRYGQPEEVAGLVEFLALNPAAGYITGQVLTIDGG 750
            NAGI     +  M+ S W  V+++NLTG+FL ++          KG IIN  SV G+V       Y+A+K GV+ LT+++A +YA  NI VN + PG I + +  K          E+++K+  +  PL R G+PEE+A ++ FLA +  + Y+TG  +T DGG
Sbjct:   87 NAGIEIVAPIHEMELSNWNKVLNVNLTGMFLMSKHALKYMLKSGKGNIINTCSVGGVVAWPDIPAYNASKGGVLQLTRSMAVDYAKHNIRVNCVCPGIIDTPLNEKSFLENNEGTLEEIKKEKAKVNPLLRLGKPEEIANVMLFLA-SDLSSYMTGSAITADGG 249          
BLAST of CV713074 vs. ExPASy Swiss-Prot
Match: BACC_BACSU (Bacilysin biosynthesis oxidoreductase bacC OS=Bacillus subtilis GN=bacC PE=3 SV=2)

HSP 1 Score: 100.138 bits (248), Expect = 1.327e-20
Identity = 62/164 (37.80%), Postives = 91/164 (55.49%), Query Frame = -1
Query:  283 NAGITRDTLLMRMKKSQWQDVIDLNLTGVFLCTQXXXXXXXXXXKGRIINIASVVGLVGNIGQANYSAAKAGVIGLTKTVAKEYASRNINVNAIAPGFIASDMTAK--------LGEDLEKKILEKIPLGRYGQPEEVAGLVEFLALNPAAGYITGQVLTIDGG 750
            NAGI     +  M+ S W  V+ +NLTG+FL ++          KG IIN  SV GLV       Y+A+K GV+ LTK++A +YA   I VN + PG I + +  K          E+++K+  +  PL R G+PEE+A ++ FLA +  + Y+TG  +T DGG
Sbjct:   87 NAGIEIVAPIHEMELSDWNKVLQVNLTGMFLMSKHALKHMLAAGKGNIINTCSVGGLVAWPDIPAYNASKGGVLQLTKSMAVDYAKHQIRVNCVCPGIIDTPLNEKSFLENNEGTLEEIKKEKAKVNPLLRLGKPEEIANVMLFLA-SDLSSYMTGSAITADGG 249          
BLAST of CV713074 vs. ExPASy Swiss-Prot
Match: IDNO_ECOLI (Gluconate 5-dehydrogenase OS=Escherichia coli (strain K12) GN=idnO PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.956e-20
Identity = 57/161 (35.40%), Postives = 87/161 (54.04%), Query Frame = -1
Query:  274 NAGITRDTLLMRMKKSQWQDVIDLNLTGVFLCTQXXXXXXXXXXKGRIINIASVVGLVGNIGQANYSAAKAGVIGLTKTVAKEYASRNINVNAIAPGFIASDMTAKLGED--LEKKILEKIPLGRYGQPEEVAGLVEFLALNPAAGYITGQVLTIDGGMVM 750
            NAGI R        + +W DVI +N T VFL +Q           G++INI S+   +G      Y+A+K  V  LT+ +  E A  NI VN IAPG+  ++MT  L ED      + ++ P  R+G P+E+ G   FL+ + A+ ++ G +L +DGGM++
Sbjct:   93 NAGIQRRHPFTEFPEQEWNDVIAVNQTAVFLVSQAVTRHMVERKAGKVINICSMQSELGRDTITPYAASKGAVKMLTRGMCVELARHNIQVNGIAPGYFKTEMTKALVEDEAFTAWLCKRTPAARWGDPQELIGAAVFLS-SKASDFVNGHLLFVDGGMLV 252          
BLAST of CV713074 vs. ExPASy Swiss-Prot
Match: IDNO_ECOL6 (Gluconate 5-dehydrogenase OS=Escherichia coli O6 GN=idnO PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.956e-20
Identity = 57/161 (35.40%), Postives = 87/161 (54.04%), Query Frame = -1
Query:  274 NAGITRDTLLMRMKKSQWQDVIDLNLTGVFLCTQXXXXXXXXXXKGRIINIASVVGLVGNIGQANYSAAKAGVIGLTKTVAKEYASRNINVNAIAPGFIASDMTAKLGED--LEKKILEKIPLGRYGQPEEVAGLVEFLALNPAAGYITGQVLTIDGGMVM 750
            NAGI R        + +W DVI +N T VFL +Q           G++INI S+   +G      Y+A+K  V  LT+ +  E A  NI VN IAPG+  ++MT  L ED      + ++ P  R+G P+E+ G   FL+ + A+ ++ G +L +DGGM++
Sbjct:   93 NAGIQRRHPFTEFPEQEWNDVIAVNQTAVFLVSQAVTRHMVERKAGKVINICSMQSELGRDTITPYAASKGAVKMLTRGMCVELARHNIQVNGIAPGYFKTEMTKALVEDEAFTAWLCKRTPAARWGDPQELIGAAVFLS-SKASDFVNGHLLFVDGGMLV 252          
BLAST of CV713074 vs. ExPASy Swiss-Prot
Match: Y4VI_RHISN (Uncharacterized short-chain type dehydrogenase/reductase y4vI OS=Rhizobium sp. (strain NGR234) GN=NGR_a01150 PE=3 SV=2)

HSP 1 Score: 97.8265 bits (242), Expect = 6.586e-20
Identity = 63/165 (38.18%), Postives = 93/165 (56.36%), Query Frame = -1
Query:  283 NAGI------TRDTLLMRMKKSQWQDVIDLNLTGVFLCTQXXXXXXXXXXKGRIINIASVVGLVGNIGQANYSAAKAGVIGLTKTVAKEYASRNINVNAIAPGFIASDMTAKL---GEDLEKKILEKIPLGRYGQPEEVAGLVEFLALNPAAGYITGQVLTIDGG 750
            NAGI      T DT L       +Q  + +NL G +  +              I+N+AS+ GL+GN  ++ Y+A+KAG+I +TK++A  +ASR I V A+APG + + M A+L   G+     I  ++PLGR  +P+E+A  V FLA +  A YITG  L +DGG
Sbjct:   90 NAGIGPTMAATADTAL-----EDFQRALAINLVGAY--SVACETAKLMKPGAAIVNVASLAGLLGNPKRSAYAASKAGLISITKSLACRWASRGIRVTAVAPGHVRTPMVAELERAGKLDVSAIRRRVPLGRIARPDEIARAVRFLA-SAQASYITGSTLVVDGG 246          

HSP 2 Score: 70.4774 bits (171), Expect = 1.126e-11
Identity = 48/142 (33.80%), Postives = 70/142 (49.30%), Query Frame = -1
Query:  277 VIDLNLTGVFLCTQXXXXXXXXXXKGRIINIASVVGLVGNIGQANYSAAKAGVIGLTKTVAKEYASRNINVNAIAPGFI----ASDMTAKLGEDLEKKILEKIPLGRYGQPEEVAGLVEFLALNPAAGYITGQVLTIDGGMV 690
            ++D+NLTG F C +             I+N+ + + L        Y A  AG+  LT+  A E     I    +APG+I    A+ + A  G D    + ++IPLGR G  EEVA    FLA +  A YI G +L +DGG++
Sbjct:  377 ILDVNLTGAFTCVREAAISMRSGSV--ILNLGASLSLSPLAPSHAYGAYNAGIDMLTRCTAAELGPLGIRTATVAPGYIRTCAANRLAAVAGMD-SASLRQRIPLGRVGDAEEVAEAAYFLA-SFDASYINGSILHVDGGLI 514          
BLAST of CV713074 vs. ExPASy Swiss-Prot
Match: HSD_MYCTU (3-alpha-(or 20-beta)-hydroxysteroid dehydrogenase OS=Mycobacterium tuberculosis GN=fabG3 PE=1 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 6.586e-20
Identity = 60/158 (37.97%), Postives = 85/158 (53.80%), Query Frame = -1
Query:  277 NAGITRDTLLMRMKKSQWQDVIDLNLTGVFLCTQXXXXXXXXXXKGRIINIASVVGLVGNIGQANYSAAKAGVIGLTKTVAKEYASRNINVNAIAPGFIASDMTAKLGEDLEKKILEKIPLGRYGQPEEVAGLVEFLALNPAAGYITGQVLTIDGGMV 750
            NAGI     +     ++WQ ++D+NLTGVFL  +          +G IINI+S+ GL G +    Y+A K  V GLTK+ A E     I VN+I PG + + MT  + ED     + +  LGR  +P EV+ LV +LA +  + Y TG    +DGG V
Sbjct:   88 NAGILNIGTIEDYALTEWQRILDVNLTGVFLGIRAVVKPMKEAGRGSIINISSIEGLAGTVACHGYTATKFAVRGLTKSTALELGPSGIRVNSIHPGLVKTPMTDWVPED-----IFQTALGRAAEPVEVSNLVVYLA-SDESSYSTGAEFVVDGGTV 239          
BLAST of CV713074 vs. ExPASy Swiss-Prot
Match: HSD_MYCBO (3-alpha-(or 20-beta)-hydroxysteroid dehydrogenase OS=Mycobacterium bovis GN=fabG3 PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 6.586e-20
Identity = 60/158 (37.97%), Postives = 85/158 (53.80%), Query Frame = -1
Query:  277 NAGITRDTLLMRMKKSQWQDVIDLNLTGVFLCTQXXXXXXXXXXKGRIINIASVVGLVGNIGQANYSAAKAGVIGLTKTVAKEYASRNINVNAIAPGFIASDMTAKLGEDLEKKILEKIPLGRYGQPEEVAGLVEFLALNPAAGYITGQVLTIDGGMV 750
            NAGI     +     ++WQ ++D+NLTGVFL  +          +G IINI+S+ GL G +    Y+A K  V GLTK+ A E     I VN+I PG + + MT  + ED     + +  LGR  +P EV+ LV +LA +  + Y TG    +DGG V
Sbjct:   88 NAGILNIGTIEDYALTEWQRILDVNLTGVFLGIRAVVKPMKEAGRGSIINISSIEGLAGTVACHGYTATKFAVRGLTKSTALELGPSGIRVNSIHPGLVKTPMTDWVPED-----IFQTALGRAAEPVEVSNLVVYLA-SDESSYSTGAEFVVDGGTV 239          
BLAST of CV713074 vs. ExPASy Swiss-Prot
Match: Y4LA_RHISN (Uncharacterized short-chain type dehydrogenase/reductase y4lA OS=Rhizobium sp. (strain NGR234) GN=NGR_a02730 PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 8.602e-20
Identity = 55/154 (35.71%), Postives = 87/154 (56.49%), Query Frame = -1
Query:  277 RDTLLMRMKKSQWQDVIDLNLTGVFLCTQXXXXXXXXXXKGRIINIASVVGLVGNIGQANYSAAKAGVIGLTKTVAKEYASRNINVNAIAPGFIASD-MTAKLGEDLEKKILEKIPLGRYGQPEEVAGLVEFLALNPAAGYITGQVLTIDGGMV 735
            RD  ++ +  + W   +  NL G  LC +           G I+N++S  GL G+  Q +Y+ +KA +  L+ ++A +Y    I  NA+APG I ++ + AKL + +++ +     L R G PE+VA LV FL L+  A +ITGQV+ IDGGM+
Sbjct:   99 RDRAILDLDLAVWDQTMATNLRGTLLCCRQAIPRMIARGGGAIVNMSSCQGLSGDTAQTSYAVSKAAMNMLSASLATQYGHAQIRCNAVAPGLIMTERLLAKLDKCMQRHLSRHQLLPRVGHPEDVAALVAFL-LSDDASFITGQVVCIDGGML 251          
The following BLAST results are available for this feature:
BLAST of CV713074 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 214
Match NameE-valueIdentityDescription
YGCW_ECOLI4.561e-2133.54Uncharacterized oxidoreductase ygcW OS=Escherichia... [more]
DHK1_STRVN1.016e-2038.24Granaticin polyketide synthase putative ketoacyl r... [more]
BACC2_BACSU1.016e-2037.20Bacilysin biosynthesis oxidoreductase bacC OS=Baci... [more]
BACC_BACSU1.327e-2037.80Bacilysin biosynthesis oxidoreductase bacC OS=Baci... [more]
IDNO_ECOLI2.956e-2035.40Gluconate 5-dehydrogenase OS=Escherichia coli (str... [more]
IDNO_ECOL62.956e-2035.40Gluconate 5-dehydrogenase OS=Escherichia coli O6 G... [more]
Y4VI_RHISN6.586e-2038.18Uncharacterized short-chain type dehydrogenase/red... [more]
HSD_MYCTU6.586e-2037.973-alpha-(or 20-beta)-hydroxysteroid dehydrogenase ... [more]
HSD_MYCBO6.586e-2037.973-alpha-(or 20-beta)-hydroxysteroid dehydrogenase ... [more]
Y4LA_RHISN8.602e-2035.71Uncharacterized short-chain type dehydrogenase/red... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0002E16_r Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0002E16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV713074 ID=CV713074; Name=CV713074; organism=Citrus sinensis; type=EST; length=750bp
TTTTTTTTTTTTTTTTTATGTATCACCCAAAAACTACATTCCATAATGCC
AATTTGAAGTACAACAAATGTTACGCGCCTCATGTTTGGTTTTTGCAACA
TGCTTAGCTTAAATTCTACCAAAACTTACCTGAATTTTTATTTCATAACA
ACACTTTGGCAACATTTCCTCATAGGATCATAAAGCAGACAAAGTTTCAA
CCCAGTCGATCTTACATATGAGAGCTACAGGTCAGAACTGAAACTAAACC
AGGCAGAATGGGTCACTGACCTACATAACCATTCCTCCGTCAATAGTAAG
CACCTGTCCAGTAATGTAACCGGCAGCGGGATTGAGGGCCAAGAATTCCA
CCAGTCCAGCAACTTCTTCAGGTTGGCCATACCTTCCTAAGGGGATTTTC
TCCAAGATCTTCTTTTCTAGGTCTTCGCCAAGCTTGGCGGTCATATCAGA
CGCGATGAATCCTGGTGCAATAGCATTGACATTAATGTTTCTGCTTGCAT
ATTCCTTTGCAACAGTTTTTGTCAGGCCAATAACACCTGCTTTTGCAGCA
CTGTAATTGGCTTGGCCAATATTTCCAACCAGACCAACAACTGATGCTAT
ATTGATTATTCTTCCCTTTTTCTTCTTCATCATGATTTTGGCTGCTGCCT
GTGTACACAGGAATACACCTGTAAGATTCAGATCGATAACGTCCTGCCAT
TGTGACTTCTTCATTCTCATGAGCAATGTATCTCTAGTGATTCCTGCATT
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