CV713074

Overview
NameCV713074
Unique NameCV713074
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length750
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV713074 vs. ExPASy Swiss-Prot
Match: DHG2_BACSU (Glucose 1-dehydrogenase 2 OS=Bacillus subtilis GN=ycdF PE=1 SV=2)

HSP 1 Score: 97.4413 bits (241), Expect = 8.602e-20
Identity = 57/149 (38.26%), Postives = 84/149 (56.38%), Query Frame = -1
Query:  274 MKKSQWQDVIDLNLTGVFLCTQXXXXXXXXXXK-GRIINIASVVGLVGNIGQANYSAAKAGVIGLTKTVAKEYASRNINVNAIAPGFIASDMTAKL-GEDLEKKILEKIPLGRYGQPEEVAGLVEFLALNPAAGYITGQVLTIDGGMVM 714
            M    WQ VID+N+TG FL  +            G ++NI+SV   +       YS +K G+  +T+T+A  YA + I VNAIAPG IA++       E+  +K L+KIP+  +G+PEEVA    +L ++  A Y+TG  L +DGGM +
Sbjct:  105 MSLEDWQRVIDVNVTGTFLGAKAALNHMMKNNIKGNVLNISSVHQQIPRPVNVQYSTSKGGIKMMTETLALNYADKGIRVNAIAPGTIATESNVDTKKEESRQKQLKKIPMKAFGKPEEVAAAAAWL-VSEEASYVTGATLFVDGGMTL 252          
BLAST of CV713074 vs. ExPASy Swiss-Prot
Match: PECR_RAT (Peroxisomal trans-2-enoyl-CoA reductase OS=Rattus norvegicus GN=Pecr PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.123e-19
Identity = 59/146 (40.41%), Postives = 83/146 (56.85%), Query Frame = -1
Query:  274 WQDVIDLNLTGVFLCTQXXXXXXXXXXKGRIINIASVVGLVGNIGQANYSAAKAGVIGLTKTVAKEYASRNINVNAIAPGFI----ASDMTAKLGEDLEKKILEKIPLGRYGQPEEVAGLVEFLALNPAAGYITGQVLTIDGGMVM 699
            WQ VI+ NLTG F   +           G I+NI  ++   G    A+  AA+AGV  LTKT+A  +AS  + +N +APG I    A D   +LG+ + +   E IP  R G PEE++ LV FL L+PAA +ITGQ++ +DGG  +
Sbjct:  124 WQAVIETNLTGTFYMCKAVYNSWMKDHGGSIVNIIVLLNN-GFPTAAHSGAARAGVYNLTKTMALTWASSGVRINCVAPGTIYSQTAVDNYGELGQTMFEMAFENIPAKRVGLPEEISPLVCFL-LSPAASFITGQLINVDGGQAL 267          
BLAST of CV713074 vs. ExPASy Swiss-Prot
Match: Y2146_BRAJA (Probable short-chain type dehydrogenase/reductase blr2146 OS=Bradyrhizobium japonicum GN=blr2146 PE=3 SV=2)

HSP 1 Score: 96.6709 bits (239), Expect = 1.467e-19
Identity = 55/154 (35.71%), Postives = 87/154 (56.49%), Query Frame = -1
Query:  277 RDTLLMRMKKSQWQDVIDLNLTGVFLCTQXXXXXXXXXXKGRIINIASVVGLVGNIGQANYSAAKAGVIGLTKTVAKEYASRNINVNAIAPGFIASD-MTAKLGEDLEKKILEKIPLGRYGQPEEVAGLVEFLALNPAAGYITGQVLTIDGGMV 735
            RD  ++ ++ + W   +  NL G  LC +           G I+N++S  GL G+    +Y+A+KA +  L+ ++A +Y    I  NA+APG I ++ + AKL   ++  +     L R G+PE+VA LV FL L+  A +ITGQV+ IDGGM+
Sbjct:   99 RDRAILELELAVWDQTMATNLRGTLLCCRQAIPRMIARGGGAIVNMSSCQGLSGDTALTSYAASKAAMNMLSSSLATQYGHAQIRCNAVAPGLIMTERLLAKLDACMQTHLRRHQLLPRVGRPEDVAALVAFL-LSDDAAFITGQVVCIDGGML 251          
BLAST of CV713074 vs. ExPASy Swiss-Prot
Match: FOX2_CANTR (Peroxisomal hydratase-dehydrogenase-epimerase OS=Candida tropicalis PE=1 SV=2)

HSP 1 Score: 96.6709 bits (239), Expect = 1.467e-19
Identity = 63/156 (40.38%), Postives = 87/156 (55.77%), Query Frame = -1
Query:  283 NAGITRDTLLMRMKKSQWQDVIDLNLTGVFLCTQXXXXXXXXXXKGRIINIASVVGLVGNIGQANYSAAKAGVIGLTKTVAKEYASRNINVNAIAPGFIASDMTAKLGEDLEKKILEKIPLGRYGQPEEVAGLVEFLALNPAAGYITGQVLTIDGG 750
            NAGI RD  + +M +  ++ VID++L G F  T+           GRI+N +S  GL GN GQANY++AK+ ++G  +T+AKE A  NI  NAIAP    S MT  +   L   +LEK+       PE+VA LV  L L+ A   +TGQ   +  G
Sbjct:   98 NAGILRDASMKKMTEKDYKLVIDVHLNGAFAVTKAAWPYFQKQKYGRIVNTSSPAGLYGNFGQANYASAKSALLGFAETLAKEGAKYNIKANAIAP-LARSRMTESI---LPPPMLEKL------GPEKVAPLV--LYLSSAENELTGQFFEVAAG 241          

HSP 2 Score: 95.9005 bits (237), Expect = 2.503e-19
Identity = 57/158 (36.08%), Postives = 84/158 (53.16%), Query Frame = -1
Query:  277 NAGITRDTLLMRMKKSQWQDVIDLNLTGVFLCTQXXXXXXXXXXKGRIINIASVVGLVGNIGQANYSAAKAGVIGLTKTVAKEYASRNINVNAIAPGFIASDMTAKLGEDLEKKILEKIPLGRYGQPEEVAGLVEFLALNPAAGYITGQVLTIDGGMV 750
            NAGI RD    +M K +W  V  ++L G F  ++           GRIINI S  G+ GN GQANYS++KAG++GL+KT+A E A  NI VN +AP    + MT  +  + +K +            ++VA L+ +L  +     +TG+   I GG +
Sbjct:  402 NAGILRDRSFAKMSKQEWDSVQQVHLIGTFNLSRLAWPYFVEKQFGRIINITSTSGIYGNFGQANYSSSKAGILGLSKTMAIEGAKNNIKVNIVAP-HAETAMTLTIFREQDKNLY---------HADQVAPLLVYLGTDDVP--VTGETFEIGGGWI 547          
BLAST of CV713074 vs. ExPASy Swiss-Prot
Match: DHRS4_RABIT (Dehydrogenase/reductase SDR family member 4 OS=Oryctolagus cuniculus GN=DHRS4 PE=1 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.503e-19
Identity = 51/149 (34.23%), Postives = 84/149 (56.38%), Query Frame = -1
Query:  283 LMRMKKSQWQDVIDLNLTGVFLCTQXXXXXXXXXXKGRIINIASVVGLVGNIGQANYSAAKAGVIGLTKTVAKEYASRNINVNAIAPGFIASDMTAKLGED--LEKKILEKIPLGRYGQPEEVAGLVEFLALNPAAGYITGQVLTIDGG 723
            LM + +  W  ++D+N+  + L T+           G ++ +AS+       G   Y+ +K  ++GLTK +A E A++NI VN +APG I +  +  L ED   E+ I++K+ + R G+PEE AG+V FL  +  A YITG+ + + GG
Sbjct:  108 LMDVTEEVWDKILDINVKAMALMTKAVVPEMEKRGGGSVVIVASIAAFNPFSGLGPYNVSKTALVGLTKNLALELAAQNIRVNCLAPGLIKTSFSKALWEDKAQEENIIQKLRIRRLGKPEECAGIVSFLC-SEDASYITGETVVVAGG 255          
BLAST of CV713074 vs. ExPASy Swiss-Prot
Match: HSD_STREX (3-alpha-(or 20-beta)-hydroxysteroid dehydrogenase OS=Streptomyces exfoliatus PE=1 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 4.269e-19
Identity = 58/157 (36.94%), Postives = 86/157 (54.78%), Query Frame = -1
Query:  283 NAGITRDTLLMRMKKSQWQDVIDLNLTGVFLCTQXXXXXXXXXXKGRIINIASVVGLVGNIGQANYSAAKAGVIGLTKTVAKEYASRNINVNAIAPGFIASDMTAKLGEDLEKKILEKIPLGRYG-QPEEVAGLVEFLALNPAAGYITGQVLTIDGG 750
            NAGI+    L      +++ V+D+NLTGVF+  +           G I+NI+S  GL+G    ++Y A+K GV GL+K  A E  +  I VN++ PG   + MTA+ G    +      P+GR G +P E+AG V  L L+  + Y+TG  L +DGG
Sbjct:   87 NAGISTGMFLETESVERFRKVVDINLTGVFIGMKTVIPAMKDAGGGSIVNISSAAGLMGLALTSSYGASKWGVRGLSKLAAVELGTDRIRVNSVHPGMTYTPMTAETGIRQGEGNYPNTPMGRVGNEPGEIAGAVVKL-LSDTSSYVTGAELAVDGG 242          
BLAST of CV713074 vs. ExPASy Swiss-Prot
Match: FOX2_YEAST (Peroxisomal hydratase-dehydrogenase-epimerase OS=Saccharomyces cerevisiae GN=FOX2 PE=1 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 5.576e-19
Identity = 59/137 (43.07%), Postives = 81/137 (59.12%), Query Frame = -1
Query:  340 NAGITRDTLLMRMKKSQWQDVIDLNLTGVFLCTQXXXXXXXXXXKGRIINIASVVGLVGNIGQANYSAAKAGVIGLTKTVAKEYASRNINVNAIAPGFIASDMTAKLGEDLEKKILEKIPLGRYGQPEEVAGLVEFL 750
            NAGI RD    +M + ++  V+D++LTG +  ++           GRIIN AS  GL GN GQANYSAAK G++GL +T+AKE A  NINVN+IAP    S MT  +   L   IL+++       PE++  LV +L
Sbjct:  100 NAGILRDVSFAKMTEREFASVVDVHLTGGYKLSRAAWPYMRSQKFGRIINTASPAGLFGNFGQANYSAAKMGLVGLAETLAKEGAKYNINVNSIAP-LARSRMTENV---LPPHILKQL------GPEKIVPLVLYL 226          

HSP 2 Score: 85.8853 bits (211), Expect = 2.590e-16
Identity = 55/160 (34.38%), Postives = 78/160 (48.75%), Query Frame = -1
Query:  283 NAGITRDTLLMRMKKSQWQDVIDLNLTGVFLCTQXXXXXXXXXXKGRIINIASVVGLVGNIGQANYSAAKAGVIGLTKTVAKEYASRNINVNAIAPGFIASDMTAKLGEDLEKKILEKIPLGRYGQPEEVAGLVEFLALNPAAGY----ITGQVLTIDGG 750
            NAGI RD   ++MK  +W  V+ ++L   F  ++           G IIN  S  G+ GN GQANY+AAKA ++G +KT+A E A R I VN IAP    +         + K I  +  L  +    +V+ LV  LA      Y    + GQ+  + GG
Sbjct:  404 NAGILRDKSFLKMKDEEWFAVLKVHLFSTFSLSKAVWPIFTKQKSGFIINTTSTSGIYGNFGQANYAAAKAAILGFSKTIALEGAKRGIIVNVIAPHAETA---------MTKTIFSEKELSNHFDASQVSPLVVLLASEELQKYSGRRVIGQLFEVGGG 554          
BLAST of CV713074 vs. ExPASy Swiss-Prot
Match: TRNH1_ARATH (Tropinone reductase homolog At1g07440 OS=Arabidopsis thaliana GN=At1g07440 PE=1 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.622e-18
Identity = 55/160 (34.38%), Postives = 85/160 (53.12%), Query Frame = -1
Query:  274 NAGITRDTLLMRMKKSQWQDVIDLNLTGVFLCTQXXXXXXXXXXKGRIINIASVVGLVGNIGQANYSAAKAGVIGLTKTVAKEYASRNINVNAIAPGFIASDMT-AKLGEDLEKKILEKIPLGRYGQPEEVAGLVEFLALNPAAGYITGQVLTIDGGMVM 750
            N G  R    +      +   I  NL   +  +Q           G II ++S+ G+V     + YSA K  +  L + +A E+AS  I  NA+AP  IA+ +  A   ++ +K ++ + PLGR+G+PEEV+ LV FL + PAA YITGQ + +DGG+ +
Sbjct:   99 NLGAIRSKPTLDYTAEDFSFHISTNLESAYHLSQLAHPLLKASGCGNIIFMSSIAGVVSASVGSIYSATKGALNQLARNLACEWASDGIRANAVAPAVIATPLAEAVYDDEFKKVVISRKPLGRFGEPEEVSSLVAFLCM-PAASYITGQTICVDGGLTV 257          
BLAST of CV713074 vs. ExPASy Swiss-Prot
Match: BDHA_RALEH (D-beta-hydroxybutyrate dehydrogenase OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=hbdH1 PE=3 SV=2)

HSP 1 Score: 93.2041 bits (230), Expect = 1.622e-18
Identity = 57/170 (33.53%), Postives = 84/170 (49.41%), Query Frame = -1
Query:  277 NAGITRDTLLMRMKKSQWQDVIDLNLTGVFLCTQXXXXXXXXXXKGRIINIASVVGLVGNIGQANYSAAKAGVIGLTKTVAKEYASRNINVNAIAPGFIASDMTAKLGEDLEKK------------ILEKIPLGRYGQPEEVAGLVEFLALNPAAGYITGQVLTIDGGMV 750
            NAGI     +      +W  +I +NLT  F  T+           GRIIN+AS  GLV +  ++ Y AAK G++G TK  A E A   +  NAI PG++ + +  K  E   +K            +LEK P G++  P+E+  L  FL+ + AA  + G +  +DGG V
Sbjct:   88 NAGIQHVAAIEDFPPERWDAIIAINLTSAFHTTRLALPGMKQKDWGRIINVASTHGLVASAQKSAYVAAKHGIVGFTKVTALETAQTGVTANAICPGWVLTPLVQKQVEARAQKEGIPVEQAKRELVLEKQPSGQFVTPDELGALAVFLS-SEAARQVRGAIWNMDGGWV 256          
BLAST of CV713074 vs. ExPASy Swiss-Prot
Match: SOU1_CANAL (Sorbose reductase SOU1 OS=Candida albicans GN=SOU1 PE=1 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.119e-18
Identity = 52/142 (36.62%), Postives = 81/142 (57.04%), Query Frame = -1
Query:  283 QWQDVIDLNLTGVFLCTQXXXXXXXXXXKGRIINIASVVGLVGNIGQ--ANYSAAKAGVIGLTKTVAKEYASRNINVNAIAPGFIASDMTAKLGEDLEKKILEKIPLGRYGQPEEVAGLVEFLALNPAAGYITGQVLTIDGG 702
            QW+ ++D +L GV+ C             G +I  +S+ G + NI Q  A Y+AAKA    L K+++ E+AS    VN+I+PG+I +D+      +++KK  +  PLGR G P+E+ G   +LA N A+ Y TG  + +DGG
Sbjct:  137 QWKKIVDCDLNGVYYCAHTVGQIFKKNKSGSLIITSSMSGTIVNIPQLQAPYNAAKAACTHLAKSLSVEWASFGARVNSISPGYILTDIADFADPEMKKKWWQLTPLGREGLPQELVGAYLYLASN-ASTYTTGSNIAVDGG 277          
The following BLAST results are available for this feature:
BLAST of CV713074 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 214
Match NameE-valueIdentityDescription
DHG2_BACSU8.602e-2038.26Glucose 1-dehydrogenase 2 OS=Bacillus subtilis GN=... [more]
PECR_RAT1.123e-1940.41Peroxisomal trans-2-enoyl-CoA reductase OS=Rattus ... [more]
Y2146_BRAJA1.467e-1935.71Probable short-chain type dehydrogenase/reductase ... [more]
FOX2_CANTR1.467e-1940.38Peroxisomal hydratase-dehydrogenase-epimerase OS=C... [more]
DHRS4_RABIT2.503e-1934.23Dehydrogenase/reductase SDR family member 4 OS=Ory... [more]
HSD_STREX4.269e-1936.943-alpha-(or 20-beta)-hydroxysteroid dehydrogenase ... [more]
FOX2_YEAST5.576e-1943.07Peroxisomal hydratase-dehydrogenase-epimerase OS=S... [more]
TRNH1_ARATH1.622e-1834.38Tropinone reductase homolog At1g07440 OS=Arabidops... [more]
BDHA_RALEH1.622e-1833.53D-beta-hydroxybutyrate dehydrogenase OS=Ralstonia ... [more]
SOU1_CANAL2.119e-1836.62Sorbose reductase SOU1 OS=Candida albicans GN=SOU1... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0002E16_r Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0002E16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV713074 ID=CV713074; Name=CV713074; organism=Citrus sinensis; type=EST; length=750bp
TTTTTTTTTTTTTTTTTATGTATCACCCAAAAACTACATTCCATAATGCC
AATTTGAAGTACAACAAATGTTACGCGCCTCATGTTTGGTTTTTGCAACA
TGCTTAGCTTAAATTCTACCAAAACTTACCTGAATTTTTATTTCATAACA
ACACTTTGGCAACATTTCCTCATAGGATCATAAAGCAGACAAAGTTTCAA
CCCAGTCGATCTTACATATGAGAGCTACAGGTCAGAACTGAAACTAAACC
AGGCAGAATGGGTCACTGACCTACATAACCATTCCTCCGTCAATAGTAAG
CACCTGTCCAGTAATGTAACCGGCAGCGGGATTGAGGGCCAAGAATTCCA
CCAGTCCAGCAACTTCTTCAGGTTGGCCATACCTTCCTAAGGGGATTTTC
TCCAAGATCTTCTTTTCTAGGTCTTCGCCAAGCTTGGCGGTCATATCAGA
CGCGATGAATCCTGGTGCAATAGCATTGACATTAATGTTTCTGCTTGCAT
ATTCCTTTGCAACAGTTTTTGTCAGGCCAATAACACCTGCTTTTGCAGCA
CTGTAATTGGCTTGGCCAATATTTCCAACCAGACCAACAACTGATGCTAT
ATTGATTATTCTTCCCTTTTTCTTCTTCATCATGATTTTGGCTGCTGCCT
GTGTACACAGGAATACACCTGTAAGATTCAGATCGATAACGTCCTGCCAT
TGTGACTTCTTCATTCTCATGAGCAATGTATCTCTAGTGATTCCTGCATT
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