CV713072

Overview
NameCV713072
Unique NameCV713072
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length444
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV713072 vs. ExPASy Swiss-Prot
Match: TRXH_FAGES (Thioredoxin H-type OS=Fagopyrum esculentum PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 2.269e-19
Identity = 43/72 (59.72%), Postives = 58/72 (80.56%), Query Frame = 3
Query:    3 GPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTIAKH 218
            GPCR I P+++ELAKK P+V F KVDVD+LK VA ++ VEAMP+F+ LKEG+ V+++VGA+K+EL   IA H
Sbjct:   40 GPCRVITPYVSELAKKFPHVAFFKVDVDDLKDVAEEYKVEAMPSFVILKEGQEVERIVGARKDELLHKIAVH 111          
BLAST of CV713072 vs. ExPASy Swiss-Prot
Match: TRXH4_ARATH (Thioredoxin H-type 4 OS=Arabidopsis thaliana GN=TRX4 PE=2 SV=2)

HSP 1 Score: 93.2041 bits (230), Expect = 5.055e-19
Identity = 45/78 (57.69%), Postives = 59/78 (75.64%), Query Frame = 3
Query:    6 PCRFIAPFLAELAKK-LPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTIAKHLATASA 236
            PCR IAP   +LAKK + + +F KVDVDEL+SVA ++ VEAMPTF+F+K G++VDK+VGA KE+LQ  I KH    +A
Sbjct:   42 PCRMIAPIFNDLAKKFMSSAIFFKVDVDELQSVAKEFGVEAMPTFVFIKAGEVVDKLVGANKEDLQAKIVKHTGVTTA 119          
BLAST of CV713072 vs. ExPASy Swiss-Prot
Match: TRXH3_ARATH (Thioredoxin H-type 3 OS=Arabidopsis thaliana GN=TRX3 PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 2.509e-18
Identity = 44/77 (57.14%), Postives = 58/77 (75.32%), Query Frame = 3
Query:    6 PCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTIAKHLATASA 236
            PCRFIAP  A+LAKK  +V+F KVDVDEL +VA ++ V+AMPTF+F+KEG+I + VVGA KEE+   + KH    +A
Sbjct:   41 PCRFIAPVFADLAKKHLDVVFFKVDVDELNTVAEEFKVQAMPTFIFMKEGEIKETVVGAAKEEIIANLEKHKTVVAA 117          
BLAST of CV713072 vs. ExPASy Swiss-Prot
Match: TRXH_BRARA (Thioredoxin H-type OS=Brassica rapa GN=PEC-2 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.626e-17
Identity = 43/77 (55.84%), Postives = 58/77 (75.32%), Query Frame = 3
Query:    6 PCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTIAKHLATASA 236
            PCRFIAP   ELAKK  +V+F KVDVDEL +VA ++ V+AMPTF+++K  + +DKVVGA KEE++  + KH   A+A
Sbjct:   47 PCRFIAPIFVELAKKHLDVVFFKVDVDELATVAKEFDVQAMPTFVYMKGEEKLDKVVGAAKEEIEAKLLKHSQVAAA 123          
BLAST of CV713072 vs. ExPASy Swiss-Prot
Match: TRXH_BRAOL (Thioredoxin H-type OS=Brassica oleracea GN=BOPC17 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.626e-17
Identity = 43/77 (55.84%), Postives = 58/77 (75.32%), Query Frame = 3
Query:    6 PCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTIAKHLATASA 236
            PCRFIAP   ELAKK  +V+F KVDVDEL +VA ++ V+AMPTF+++K  + +DKVVGA KEE++  + KH   A+A
Sbjct:   47 PCRFIAPIFVELAKKHLDVVFFKVDVDELATVAQEFDVQAMPTFVYMKGEEKLDKVVGAAKEEIEAKLLKHSQVAAA 123          
BLAST of CV713072 vs. ExPASy Swiss-Prot
Match: TRXH1_BRANA (Thioredoxin H-type 1 OS=Brassica napus GN=THL-1 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.626e-17
Identity = 43/77 (55.84%), Postives = 58/77 (75.32%), Query Frame = 3
Query:    6 PCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTIAKHLATASA 236
            PCRFIAP   ELAKK  +V+F KVDVDEL +VA ++ V+AMPTF+++K  + +DKVVGA KEE++  + KH   A+A
Sbjct:   47 PCRFIAPIFVELAKKHLDVVFFKVDVDELATVAQEFDVQAMPTFVYMKGEEKLDKVVGAAKEEIEAKLLKHSQVAAA 123          
BLAST of CV713072 vs. ExPASy Swiss-Prot
Match: TRXH_POPJC (Thioredoxin H-type OS=Populus jackii PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 7.554e-15
Identity = 34/69 (49.28%), Postives = 50/69 (72.46%), Query Frame = 3
Query:    3 GPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTI 209
            GPC+ IAP+  EL++  P+++FL +DVDEL   +  W ++A PTF FL++G+ VDK+VGA K EL + I
Sbjct:   59 GPCKQIAPYYIELSENYPSLMFLVIDVDELSDFSASWEIKATPTFFFLRDGQQVDKLVGANKPELHKKI 127          
BLAST of CV713072 vs. ExPASy Swiss-Prot
Match: TRXH9_ARATH (Thioredoxin H-type 9 OS=Arabidopsis thaliana GN=TRX9 PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 9.865e-15
Identity = 34/69 (49.28%), Postives = 50/69 (72.46%), Query Frame = 3
Query:    3 GPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTI 209
            GPC+ +APF  EL++K  +++FL VDVDEL   ++ W ++A PTF FLK G+ + K+VGA K ELQ+ +
Sbjct:   58 GPCKIVAPFFIELSEKHSSLMFLLVDVDELSDFSSSWDIKATPTFFFLKNGQQIGKLVGANKPELQKKV 126          
BLAST of CV713072 vs. ExPASy Swiss-Prot
Match: TRXH2_ARATH (Thioredoxin H-type 2 OS=Arabidopsis thaliana GN=TRX2 PE=2 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 3.749e-14
Identity = 34/71 (47.89%), Postives = 53/71 (74.65%), Query Frame = 3
Query:    3 GPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTIAK 215
            GPCR I P +  +A K  +V F+K+DVDEL  VA ++ V AMPTF+ +K GK +++++GAKK+EL++ ++K
Sbjct:   60 GPCRMIEPAIHAMADKFNDVDFVKLDVDELPDVAKEFNVTAMPTFVLVKRGKEIERIIGAKKDELEKKVSK 130          
BLAST of CV713072 vs. ExPASy Swiss-Prot
Match: THIO_HORSE (Thioredoxin OS=Equus caballus GN=TXN PE=3 SV=3)

HSP 1 Score: 75.8702 bits (185), Expect = 8.352e-14
Identity = 35/69 (50.72%), Postives = 49/69 (71.01%), Query Frame = 3
Query:    3 GPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTI 209
            GPC+ I PF   L++K  NV+FL+VDVD+ + VA +  V+ MPTF F K+G+ VD+  GA KE+L+ TI
Sbjct:   33 GPCKMIKPFFHSLSEKYSNVVFLEVDVDDCQDVAAECEVKCMPTFQFFKKGQKVDEFSGANKEKLEATI 101          
The following BLAST results are available for this feature:
BLAST of CV713072 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 36
Match NameE-valueIdentityDescription
TRXH_FAGES2.269e-1959.72Thioredoxin H-type OS=Fagopyrum esculentum PE=3 SV... [more]
TRXH4_ARATH5.055e-1957.69Thioredoxin H-type 4 OS=Arabidopsis thaliana GN=TR... [more]
TRXH3_ARATH2.509e-1857.14Thioredoxin H-type 3 OS=Arabidopsis thaliana GN=TR... [more]
TRXH_BRARA1.626e-1755.84Thioredoxin H-type OS=Brassica rapa GN=PEC-2 PE=2 ... [more]
TRXH_BRAOL1.626e-1755.84Thioredoxin H-type OS=Brassica oleracea GN=BOPC17 ... [more]
TRXH1_BRANA1.626e-1755.84Thioredoxin H-type 1 OS=Brassica napus GN=THL-1 PE... [more]
TRXH_POPJC7.554e-1549.28Thioredoxin H-type OS=Populus jackii PE=1 SV=1[more]
TRXH9_ARATH9.865e-1549.28Thioredoxin H-type 9 OS=Arabidopsis thaliana GN=TR... [more]
TRXH2_ARATH3.749e-1447.89Thioredoxin H-type 2 OS=Arabidopsis thaliana GN=TR... [more]
THIO_HORSE8.352e-1450.72Thioredoxin OS=Equus caballus GN=TXN PE=3 SV=3[more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0002E15_r Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0002E15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV713072 ID=CV713072; Name=CV713072; organism=Citrus sinensis; type=EST; length=444bp
GCGGACCATGCCGTTTCATTGCTCCTTTCTTGGCAGAGCTGGCCAAGAAA
CTGCCTAATGTCCTGTTTCTGAAGGTTGATGTGGATGAACTGAAGAGTGT
TGCCACTGACTGGGCAGTGGAGGCCATGCCAACTTTCATGTTCCTGAAAG
AGGGGAAGATTGTGGACAAGGTGGTTGGAGCAAAGAAAGAGGAACTGCAG
CAGACTATTGCCAAGCATCTGGCAACTGCTTCTGCCTAATAAGTTATAAC
TATCCTCCTGCCTTTTGGCTTTAGAGGCTATAGACCTCAATATATGCTAT
CAGTCTGTAATTTACTTATTAGAGTGGTTATGGGATTGTGTTTGTTTGTG
TGTTTGAATATTCCGTAATTTACTGTTCTATGAAGCTCATACTGTGGTCT
TTACAATAATTTAATTTCATATTTGTTGTTGAACCTAAAAAAAA
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