CV713072

Overview
NameCV713072
Unique NameCV713072
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length444
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV713072 vs. ExPASy Swiss-Prot
Match: THIO_HUMAN (Thioredoxin OS=Homo sapiens GN=TXN PE=1 SV=3)

HSP 1 Score: 73.9442 bits (180), Expect = 3.174e-13
Identity = 34/69 (49.28%), Postives = 49/69 (71.01%), Query Frame = 3
Query:    3 GPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTI 209
            GPC+ I PF   L++K  NV+FL+VDVD+ + VA++  V+ MPTF F K+G+ V +  GA KE+L+ TI
Sbjct:   33 GPCKMIKPFFHSLSEKYSNVIFLEVDVDDCQDVASECEVKCMPTFQFFKKGQKVGEFSGANKEKLEATI 101          
BLAST of CV713072 vs. ExPASy Swiss-Prot
Match: THIO_SHEEP (Thioredoxin OS=Ovis aries GN=TXN PE=3 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 4.145e-13
Identity = 34/69 (49.28%), Postives = 48/69 (69.57%), Query Frame = 3
Query:    3 GPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTI 209
            GPC+ I PF   L++K  NV+FL+VDVD+ + VA +  V+ MPTF F K+G+ V +  GA KE+L+ TI
Sbjct:   33 GPCKMIKPFFHSLSEKYSNVVFLEVDVDDCQDVAAECEVKCMPTFQFFKKGQKVSEFSGANKEKLEATI 101          
BLAST of CV713072 vs. ExPASy Swiss-Prot
Match: THIO_RAT (Thioredoxin OS=Rattus norvegicus GN=Txn PE=1 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 4.145e-13
Identity = 35/71 (49.30%), Postives = 47/71 (66.20%), Query Frame = 3
Query:    3 GPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTIAK 215
            GPC+ I PF   L  K  NV+FL+VDVD+ + VA D  V+ MPTF F K+G+ V +  GA KE+L+ TI +
Sbjct:   33 GPCKMIKPFFHSLCDKYSNVVFLEVDVDDCQDVAADCEVKCMPTFQFYKKGQKVGEFSGANKEKLEATITE 103          
BLAST of CV713072 vs. ExPASy Swiss-Prot
Match: THIO_PIG (Thioredoxin OS=Sus scrofa GN=TXN PE=1 SV=3)

HSP 1 Score: 73.559 bits (179), Expect = 4.145e-13
Identity = 34/69 (49.28%), Postives = 49/69 (71.01%), Query Frame = 3
Query:    3 GPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTI 209
            GPC+ I PF   L++K  NV+FL+VDVD+ + VA++  V+ MPTF F K+G+ V +  GA KE+L+ TI
Sbjct:   33 GPCKMIKPFFHSLSEKYSNVVFLEVDVDDCQDVASECEVKCMPTFQFFKKGQKVGEFSGANKEKLEATI 101          
BLAST of CV713072 vs. ExPASy Swiss-Prot
Match: THIO_MACMU (Thioredoxin OS=Macaca mulatta GN=TXN PE=3 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 4.145e-13
Identity = 34/69 (49.28%), Postives = 49/69 (71.01%), Query Frame = 3
Query:    3 GPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTI 209
            GPC+ I PF   L++K  NV+FL+VDVD+ + VA++  V+ MPTF F K+G+ V +  GA KE+L+ TI
Sbjct:   33 GPCKMIKPFFHSLSEKYSNVVFLEVDVDDCQDVASECEVKCMPTFQFFKKGQKVGEFSGANKEKLEATI 101          
BLAST of CV713072 vs. ExPASy Swiss-Prot
Match: THIO_CALJA (Thioredoxin OS=Callithrix jacchus GN=TXN PE=3 SV=3)

HSP 1 Score: 73.559 bits (179), Expect = 4.145e-13
Identity = 34/69 (49.28%), Postives = 49/69 (71.01%), Query Frame = 3
Query:    3 GPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTI 209
            GPC+ I PF   L++K  NV+FL+VDVD+ + VA++  V+ MPTF F K+G+ V +  GA KE+L+ TI
Sbjct:   33 GPCKMIKPFFHSLSEKYSNVVFLEVDVDDCQDVASECEVKCMPTFQFFKKGQKVGEFSGANKEKLEATI 101          
BLAST of CV713072 vs. ExPASy Swiss-Prot
Match: THIO_RABIT (Thioredoxin OS=Oryctolagus cuniculus GN=TXN PE=1 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 5.413e-13
Identity = 33/69 (47.83%), Postives = 48/69 (69.57%), Query Frame = 3
Query:    3 GPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTI 209
            GPC+ I PF   L++K  NV+F++VDVD+ K +A +  V+ MPTF F K+G+ V +  GA KE+L+ TI
Sbjct:   33 GPCKMIKPFFHALSEKFNNVVFIEVDVDDCKDIAAECEVKCMPTFQFFKKGQKVGEFSGANKEKLEATI 101          
BLAST of CV713072 vs. ExPASy Swiss-Prot
Match: THIO_BOVIN (Thioredoxin OS=Bos taurus GN=TXN PE=3 SV=3)

HSP 1 Score: 73.1738 bits (178), Expect = 5.413e-13
Identity = 34/69 (49.28%), Postives = 48/69 (69.57%), Query Frame = 3
Query:    3 GPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTI 209
            GPC+ I PF   L++K  NV+FL+VDVD+ + VA +  V+ MPTF F K+G+ V +  GA KE+L+ TI
Sbjct:   33 GPCKMIKPFFHSLSEKYSNVVFLEVDVDDCQDVAAECEVKCMPTFQFFKKGQKVGEFSGANKEKLEATI 101          
BLAST of CV713072 vs. ExPASy Swiss-Prot
Match: THIO_MOUSE (Thioredoxin OS=Mus musculus GN=Txn PE=1 SV=3)

HSP 1 Score: 72.7886 bits (177), Expect = 7.070e-13
Identity = 34/72 (47.22%), Postives = 48/72 (66.67%), Query Frame = 3
Query:    3 GPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTIAKH 218
            GPC+ I PF   L  K  NV+FL+VDVD+ + VA D  V+ MPTF F K+G+ V +  GA KE+L+ +I ++
Sbjct:   33 GPCKMIKPFFHSLCDKYSNVVFLEVDVDDCQDVAADCEVKCMPTFQFYKKGQKVGEFSGANKEKLEASITEY 104          
BLAST of CV713072 vs. ExPASy Swiss-Prot
Match: THIO_CHICK (Thioredoxin OS=Gallus gallus GN=TXN PE=3 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 1.575e-12
Identity = 33/69 (47.83%), Postives = 46/69 (66.67%), Query Frame = 3
Query:    3 GPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTI 209
            GPC+ I PF   L  K  +V+F+++DVD+ + VAT   V+ MPTF F K GK V +  GA KE+L++TI
Sbjct:   33 GPCKMIKPFFHSLCDKFGDVVFIEIDVDDAQDVATHCDVKCMPTFQFYKNGKKVQEFSGANKEKLEETI 101          
The following BLAST results are available for this feature:
BLAST of CV713072 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 36
Match NameE-valueIdentityDescription
THIO_HUMAN3.174e-1349.28Thioredoxin OS=Homo sapiens GN=TXN PE=1 SV=3[more]
THIO_SHEEP4.145e-1349.28Thioredoxin OS=Ovis aries GN=TXN PE=3 SV=2[more]
THIO_RAT4.145e-1349.30Thioredoxin OS=Rattus norvegicus GN=Txn PE=1 SV=2[more]
THIO_PIG4.145e-1349.28Thioredoxin OS=Sus scrofa GN=TXN PE=1 SV=3[more]
THIO_MACMU4.145e-1349.28Thioredoxin OS=Macaca mulatta GN=TXN PE=3 SV=2[more]
THIO_CALJA4.145e-1349.28Thioredoxin OS=Callithrix jacchus GN=TXN PE=3 SV=3[more]
THIO_RABIT5.413e-1347.83Thioredoxin OS=Oryctolagus cuniculus GN=TXN PE=1 S... [more]
THIO_BOVIN5.413e-1349.28Thioredoxin OS=Bos taurus GN=TXN PE=3 SV=3[more]
THIO_MOUSE7.070e-1347.22Thioredoxin OS=Mus musculus GN=Txn PE=1 SV=3[more]
THIO_CHICK1.575e-1247.83Thioredoxin OS=Gallus gallus GN=TXN PE=3 SV=2[more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS08_0002E15_r Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0002E15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV713072 ID=CV713072; Name=CV713072; organism=Citrus sinensis; type=EST; length=444bp
GCGGACCATGCCGTTTCATTGCTCCTTTCTTGGCAGAGCTGGCCAAGAAA
CTGCCTAATGTCCTGTTTCTGAAGGTTGATGTGGATGAACTGAAGAGTGT
TGCCACTGACTGGGCAGTGGAGGCCATGCCAACTTTCATGTTCCTGAAAG
AGGGGAAGATTGTGGACAAGGTGGTTGGAGCAAAGAAAGAGGAACTGCAG
CAGACTATTGCCAAGCATCTGGCAACTGCTTCTGCCTAATAAGTTATAAC
TATCCTCCTGCCTTTTGGCTTTAGAGGCTATAGACCTCAATATATGCTAT
CAGTCTGTAATTTACTTATTAGAGTGGTTATGGGATTGTGTTTGTTTGTG
TGTTTGAATATTCCGTAATTTACTGTTCTATGAAGCTCATACTGTGGTCT
TTACAATAATTTAATTTCATATTTGTTGTTGAACCTAAAAAAAA
back to top