CV713072

Overview
NameCV713072
Unique NameCV713072
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length444
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV713072 vs. ExPASy Swiss-Prot
Match: THIO_OPHHA (Thioredoxin OS=Ophiophagus hannah GN=TXN PE=3 SV=3)

HSP 1 Score: 70.0922 bits (170), Expect = 4.583e-12
Identity = 30/73 (41.10%), Postives = 49/73 (67.12%), Query Frame = 3
Query:    3 GPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTIAKHL 221
            GPC+ I PF   + +K P+V+F+++DVD+ + VA+   V+ MPTF F K  + V +  GA KE+L++ I K++
Sbjct:   33 GPCKMIKPFFHSMVEKYPDVVFIEIDVDDAQDVASHCDVKCMPTFQFYKNNEKVHEFSGANKEKLEEAIKKYM 105          
BLAST of CV713072 vs. ExPASy Swiss-Prot
Match: THIO_PONAB (Thioredoxin OS=Pongo abelii GN=TXN PE=3 SV=3)

HSP 1 Score: 69.3218 bits (168), Expect = 7.817e-12
Identity = 34/70 (48.57%), Postives = 49/70 (70.00%), Query Frame = 3
Query:    3 GPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTF-MFLKEGKIVDKVVGAKKEELQQTI 209
            GPC+ I PF   L++K  NV+FL+VDVD+ + VA++  V+ MPTF  F K+G+ V +  GA KE+L+ TI
Sbjct:   33 GPCKMIKPFFHSLSEKYSNVIFLEVDVDDCQDVASECEVKCMPTFQFFFKKGQKVGEFSGANKEKLEATI 102          
BLAST of CV713072 vs. ExPASy Swiss-Prot
Match: TRXL4_ARATH (Thioredoxin-like 4 OS=Arabidopsis thaliana GN=At1g11530 PE=2 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 2.274e-11
Identity = 33/68 (48.53%), Postives = 47/68 (69.12%), Query Frame = 3
Query:    6 PCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTI 209
            P  F+  F  ELA    + LFL VDVDE+K VA+   V+AMPTF+FLK+G  +DK+VGA  +E+++ +
Sbjct:   38 PSVFMNSFFEELAFNYKDALFLIVDVDEVKEVASQLEVKAMPTFLFLKDGNAMDKLVGANPDEIKKRV 105          
BLAST of CV713072 vs. ExPASy Swiss-Prot
Match: THIO1_CAEEL (Thioredoxin-1 OS=Caenorhabditis elegans GN=trx-1 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.879e-11
Identity = 29/74 (39.19%), Postives = 48/74 (64.86%), Query Frame = 3
Query:    3 GPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTIAKHLA 224
            GPC+ IAP   ELA     ++F KVDVDE + + + + V+ MPTF+F K G  ++ + G  ++EL+Q + +H++
Sbjct:   40 GPCKAIAPLYKELATTHKGIIFCKVDVDEAEDLCSKYDVKMMPTFIFTKNGDAIEALEGCVEDELRQKVLEHVS 113          
BLAST of CV713072 vs. ExPASy Swiss-Prot
Match: TRX1_YEAST (Thioredoxin-1 OS=Saccharomyces cerevisiae GN=TRX1 PE=1 SV=3)

HSP 1 Score: 65.855 bits (159), Expect = 8.643e-11
Identity = 33/70 (47.14%), Postives = 43/70 (61.43%), Query Frame = 3
Query:    3 GPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTIA 212
            GPC+ IAP + + +++ P   F K+DVDEL  VA    V AMPT +  K GK V KVVGA    ++Q IA
Sbjct:   31 GPCKMIAPMIEKFSEQYPQADFYKLDVDELGDVAQKNEVSAMPTLLLFKNGKEVAKVVGANPAAIKQAIA 100          
BLAST of CV713072 vs. ExPASy Swiss-Prot
Match: THIO_GEOCY (Thioredoxin OS=Geodia cydonium GN=THIO PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 8.643e-11
Identity = 35/73 (47.95%), Postives = 47/73 (64.38%), Query Frame = 3
Query:    3 GPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGK-IVDKVVGAKKEELQQTIAKH 218
            GPC+ IAP   E+AK+ P+V+F KVDVDE    A    ++AMPTF F K GK + D V GA +  L++ I K+
Sbjct:   33 GPCQRIAPKYVEMAKEFPDVIFYKVDVDENDETAEAEKIQAMPTFKFYKSGKALSDYVQGANEAGLREKIKKN 105          
The following BLAST results are available for this feature:
BLAST of CV713072 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 36
Match NameE-valueIdentityDescription
THIO_OPHHA4.583e-1241.10Thioredoxin OS=Ophiophagus hannah GN=TXN PE=3 SV=3[more]
THIO_PONAB7.817e-1248.57Thioredoxin OS=Pongo abelii GN=TXN PE=3 SV=3[more]
TRXL4_ARATH2.274e-1148.53Thioredoxin-like 4 OS=Arabidopsis thaliana GN=At1g... [more]
THIO1_CAEEL3.879e-1139.19Thioredoxin-1 OS=Caenorhabditis elegans GN=trx-1 P... [more]
TRX1_YEAST8.643e-1147.14Thioredoxin-1 OS=Saccharomyces cerevisiae GN=TRX1 ... [more]
THIO_GEOCY8.643e-1147.95Thioredoxin OS=Geodia cydonium GN=THIO PE=3 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0002E15_r Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0002E15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV713072 ID=CV713072; Name=CV713072; organism=Citrus sinensis; type=EST; length=444bp
GCGGACCATGCCGTTTCATTGCTCCTTTCTTGGCAGAGCTGGCCAAGAAA
CTGCCTAATGTCCTGTTTCTGAAGGTTGATGTGGATGAACTGAAGAGTGT
TGCCACTGACTGGGCAGTGGAGGCCATGCCAACTTTCATGTTCCTGAAAG
AGGGGAAGATTGTGGACAAGGTGGTTGGAGCAAAGAAAGAGGAACTGCAG
CAGACTATTGCCAAGCATCTGGCAACTGCTTCTGCCTAATAAGTTATAAC
TATCCTCCTGCCTTTTGGCTTTAGAGGCTATAGACCTCAATATATGCTAT
CAGTCTGTAATTTACTTATTAGAGTGGTTATGGGATTGTGTTTGTTTGTG
TGTTTGAATATTCCGTAATTTACTGTTCTATGAAGCTCATACTGTGGTCT
TTACAATAATTTAATTTCATATTTGTTGTTGAACCTAAAAAAAA
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