CV713070

Overview
NameCV713070
Unique NameCV713070
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length794
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV713070 vs. ExPASy Swiss-Prot
Match: CSLH1_ORYSJ (Cellulose synthase-like protein H1 OS=Oryza sativa subsp. japonica GN=CSLH1 PE=2 SV=2)

HSP 1 Score: 116.316 bits (290), Expect = 1.952e-25
Identity = 75/233 (32.19%), Postives = 115/233 (49.36%), Query Frame = 2
Query:   11 TEWGKEVGWIYGSVTEDILTGFKMHCHGWRSVYCIPKRACFKGSAPINLSDRLHQVLRWALGSVEIFLSRHCPIWYGYGGGLKLLERFSYINSVVYPWTSIPLIVYCTLPAFCLLTGKFIVPEISNYASLVFIGLFISIAATGILEMQWGGVGIDDWWRNEQFWVIGGASSHFFALFQGLLKVLAGVSTNFTVT--SKGADDGEFSE------LYLFKWTSLLIPPTTLFIIN 685
            T WG+EVGW+YGS+TED+LTG ++H  GWRS     +   F G AP      L Q+ RWA G +EI +SR+ PI       L+  +  +Y++S V+P  +   + Y  L  +CLL+ +  +P+ S     + + LFI+      +E    G      W N +   I  AS+   A    +LK L    T F VT   K   DG+ +        + F  +++ IP T L +++
Sbjct:  443 TCWGQEVGWVYGSLTEDVLTGQRIHAAGWRSTLMEIEPPAFMGCAPNGGPACLTQLKRWASGFLEILISRNNPILTTTFKSLQFRQCLAYLHSYVWPVRAPFELCYALLGPYCLLSNQSFLPKTSEDGFYIALALFIAYNTYMFMEFIECGQSARACWNNHRMQRITSASAWLLAFLTVILKTLGFSETVFEVTRKDKSTSDGDSNTDEPEPGRFTFDESTVFIPVTALAMLS 675          
BLAST of CV713070 vs. ExPASy Swiss-Prot
Match: CSLB3_ARATH (Cellulose synthase-like protein B3 OS=Arabidopsis thaliana GN=CSLB3 PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 9.689e-25
Identity = 61/203 (30.05%), Postives = 99/203 (48.77%), Query Frame = 2
Query:    2 EDKTEWGKEVGWIYGSVTEDILTGFKMHCHGWRSVYCIPKRACFKGSAPINLSDRLHQVLRWALGSVEIFLSRHCPIWYGYGGGLKLLERFSYINSVVYPWTSIPLIVYCTLPAFCLLTGKFIVPEISNYASLVFIGLFISIAATGILEMQWG----GVGIDDWWRNEQFWVIGGASSHFFALFQGLLKVLAGVSTNFTVTSK 598
            E +T WGK +GW+Y S  ED  T   +H  GW S Y  PK   F G+ P    + + Q  RWA G +E+  ++  P+   +   ++  +  +Y+    +   SIP ++YC LPA+CLL    + P+       V++G+ +++     L   W     G  +  W+ ++ FW I    S  F++   +LK+L    T F VT K
Sbjct:  442 EYQTSWGKTIGWLYESTAEDANTSIGIHSRGWTSSYISPKPPAFLGAMPPGGPEAMLQQRRWATGLLEVLFNKQSPLIGMFCRKIRFRQSLAYLYIFTWGLRSIPELIYCLLPAYCLLHNAALFPK------GVYLGIVVTLVGMHCLYSLWEFMSLGFSVQSWFASQSFWRIKTTCSWLFSIPDIILKLLGISKTVFIVTKK 638          
BLAST of CV713070 vs. ExPASy Swiss-Prot
Match: CSLB4_ARATH (Cellulose synthase-like protein B4 OS=Arabidopsis thaliana GN=CSLB4 PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.071e-23
Identity = 63/203 (31.03%), Postives = 96/203 (47.29%), Query Frame = 2
Query:    2 EDKTEWGKEVGWIYGSVTEDILTGFKMHCHGWRSVYCIPKRACFKGSAPINLSDRLHQVLRWALGSVEIFLSRHCPIWYGYGGGLKLLERFSYINSVVYPWTSIPLIVYCTLPAFCLLTGKFIVPEISNYASLVFIGLFISIAATGILEMQWG----GVGIDDWWRNEQFWVIGGASSHFFALFQGLLKVLAGVSTNFTVTSK 598
            E +T WGK +GW+Y S TED+ T   +H  GW S Y  P    F G  P    + + Q  RWA G +EI  ++  P+   +   ++  +  +Y+    +   SIP + YC LPA+CLL    + P+       V++G+ I++     L   W     G  I  W+  + F  I    S  F++   +LK+L    T F VT K
Sbjct:  442 EYQTSWGKNIGWLYDSTTEDVNTSIGIHSRGWTSSYIFPDPPAFLGCMPQGGPEVMVQQRRWATGLLEILFNKQSPLIGMFCRKIRFRQSLAYLYVFSWGLRSIPELFYCLLPAYCLLHNSALFPK------GVYLGIIITLVGIHCLYTLWEFMNLGFSIQSWYVTQSFGRIKTTCSWLFSVLDVILKLLGISKTVFIVTKK 638          
BLAST of CV713070 vs. ExPASy Swiss-Prot
Match: CSLB6_ARATH (Cellulose synthase-like protein B6 OS=Arabidopsis thaliana GN=CSLB6 PE=2 SV=2)

HSP 1 Score: 107.457 bits (267), Expect = 9.069e-23
Identity = 75/251 (29.88%), Postives = 115/251 (45.82%), Query Frame = 2
Query:    2 EDKTEWGKEVGWIYGSVTEDILTGFKMHCHGWRSVYCIPKRACFKGSAPINLSDRLHQVLRWALGSVEIFLSRHCPIWYGYGGGLKLLERFSYINSVVYPWTSIPLIVYCTLPAFCLLTGKFIVPEISNYASLVFIGLFISIAATGILEMQWG----GVGIDDWWRNEQFWVIGGASSHFFALFQGLLKVLAGVSTNFTVT-----------------SKGADDGEFSELYLFKWTSL--LIPPTTLFIIN 685
            E +T WG  +GW+Y SV ED  T   +H  GW S +  P    F GS P    + + Q  RWA GS+E+  ++  P+  G+   +K  +R +Y   V+    SIP +VYC LPA+CLL    + P+         +G+ +++     L   W     G  +  W+ ++  W I   SS  F++   +LK+L      F V                  S+G DDG   EL  F++ S    IP T + ++N
Sbjct:  442 EYQTSWGN-LGWLYDSVAEDTNTSIGIHLRGWTSSFISPDPPAFLGSTPSVGPEAIVQHRRWATGSIEVLFNKQSPL-IGFRRKIKFRQRLAYF-WVLMCIRSIPELVYCLLPAYCLLNNSALFPKGP------CLGIIVTLVGMHCLYTLWQFMILGFSVKSWYVSQSLWRIIATSSWLFSIQDIILKLLGISKIGFIVAKKNMPETRSGYESKSKPSQGEDDGLKLELGKFEFDSSCHFIPGTFIMLVN 683          
BLAST of CV713070 vs. ExPASy Swiss-Prot
Match: CSLB5_ARATH (Cellulose synthase-like protein B5 OS=Arabidopsis thaliana GN=CSLB5 PE=2 SV=2)

HSP 1 Score: 104.375 bits (259), Expect = 7.677e-22
Identity = 70/246 (28.46%), Postives = 115/246 (46.75%), Query Frame = 2
Query:    2 EDKTEWGKEVGWIYGSVTEDILTGFKMHCHGWRSVYCIPKRACFKGSAPINLSDRLHQVLRWALGSVEIFLSRHCPIWYGYGGGLKLLERFSYINSVVYPWTSIPLIVYCTLPAFCLLTGKFIVPEISNYASLV-FIGLFISIAATGILEMQWGGVGIDDWWRNEQFWVIGGASSHFFALFQGLLKVLAGVSTNFTVT---------------SKGADDGEFSELYLFKWTS--LLIPPTTLFIIN 685
            E +T WG  +GW+Y SV EDI T   +H  GW S +  P    F GS P    + + Q  RWA G++E+  ++  P    + G +K  +R +Y  +++    SIP ++YC LPA+CLL    + P+     ++V  +G+    +    + +   G  +  W+  +  W I   SS  F++   +LK+L      F +                S+G DD     L  F++ S  L IP T + ++N
Sbjct:  442 EYQTSWGN-LGWMYDSVAEDINTSVGIHLRGWTSSFISPDPPAFIGSTPTLGLEAIVQQRRWATGAIEVLFNKQSPFMGMFHGKIKFRQRLAYFWALMC-LRSIPELIYCLLPAYCLLHDSALFPKGPCLCTIVTLVGMHCLYSLWQFMSL---GFSVQSWYVVQSLWRIIATSSWLFSIQDIILKLLGISQIGFVIAKKTIPETKSVYESKPSQGEDDVPKLNLGKFEFDSSGLFIPGTFIMLVN 682          
The following BLAST results are available for this feature:
BLAST of CV713070 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 65
Match NameE-valueIdentityDescription
CSLH1_ORYSJ1.952e-2532.19Cellulose synthase-like protein H1 OS=Oryza sativa... [more]
CSLB3_ARATH9.689e-2530.05Cellulose synthase-like protein B3 OS=Arabidopsis ... [more]
CSLB4_ARATH1.071e-2331.03Cellulose synthase-like protein B4 OS=Arabidopsis ... [more]
CSLB6_ARATH9.069e-2329.88Cellulose synthase-like protein B6 OS=Arabidopsis ... [more]
CSLB5_ARATH7.677e-2228.46Cellulose synthase-like protein B5 OS=Arabidopsis ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0002E14_r Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0002E14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV713070 ID=CV713070; Name=CV713070; organism=Citrus sinensis; type=EST; length=794bp
TGAAGATAAAACAGAATGGGGAAAGGAAGTTGGCTGGATATATGGTTCTG
TGACTGAGGATATCCTGACTGGGTTCAAGATGCACTGCCATGGTTGGAGA
TCTGTATACTGCATTCCCAAACGGGCTTGCTTTAAGGGATCAGCCCCTAT
CAATCTTTCAGATCGTCTACACCAGGTTCTTCGGTGGGCCTTGGGATCTG
TTGAGATATTCTTGAGCAGACATTGCCCAATCTGGTATGGTTATGGGGGT
GGGTTGAAATTGCTGGAGAGATTTTCATATATAAACTCAGTTGTGTACCC
TTGGACCTCCATTCCTTTGATTGTTTACTGTACGCTACCTGCCTTCTGCC
TTCTCACTGGGAAATTCATTGTTCCTGAGATTAGCAACTATGCTAGTCTC
GTCTTTATTGGTCTCTTCATATCTATTGCTGCAACTGGTATCCTTGAGAT
GCAGTGGGGTGGTGTTGGCATAGATGATTGGTGGAGAAACGAGCAGTTCT
GGGTGATTGGAGGTGCTTCGTCGCACTTTTTTGCTCTCTTCCAGGGTCTA
CTAAAGGTTTTGGCTGGTGTCAGTACAAACTTCACAGTTACCTCTAAAGG
AGCAGATGATGGTGAATTTTCTGAGCTTTACCTCTTCAAGTGGACATCCT
TATTAATCCCTCCCACGACTTTGTTTATCATTAATGTAGTCGGGGTTGTA
GTTGGGATCTCGGATGCCATCAATAACGGGTATGATTCATGGGGCCCACT
TTTTTGGAAGGCTATTCTTTGCCCTTTGGGTCATCATCCACCTC
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