CV713067

Overview
NameCV713067
Unique NameCV713067
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length713
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV713067 vs. ExPASy Swiss-Prot
Match: FAL1_ASPTN (ATP-dependent RNA helicase fal1 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=fal1 PE=3 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 1.663e-46
Identity = 98/163 (60.12%), Postives = 120/163 (73.62%), Query Frame = 2
Query:  227 DGQDFFTSYD-EVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVL 712
            D  +F TS +  V  +F+ M L+E+LLRGIYAYG+E PSA+Q R IV  CKG D I QAQSGTGKTATF   ILQ +D  + + QALVL+PTRELA QI+ V+ ALGDY+ V+ HAC+GGT++ ED R L  G HVV GTPGRV DM+RR+ LR  +IKM VL
Sbjct:   11 DRMEFNTSKEVTVAPTFEDMHLKESLLRGIYAYGYESPSAVQSRAIVQICKGRDTIAQAQSGTGKTATFAISILQVIDTVVRESQALVLSPTRELATQIQSVIMALGDYMNVQCHACIGGTNIGEDIRKLDYGQHVVSGTPGRVADMIRRRHLRTRHIKMLVL 173          
BLAST of CV713067 vs. ExPASy Swiss-Prot
Match: FAL1_ASPNC (ATP-dependent RNA helicase fal1 OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=fal1 PE=3 SV=2)

HSP 1 Score: 185.652 bits (470), Expect = 2.172e-46
Identity = 98/163 (60.12%), Postives = 120/163 (73.62%), Query Frame = 2
Query:  227 DGQDFFTSYD-EVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVL 712
            D  +F TS +  V  +F+ M L+E+LLRGIYAYG+E PSA+Q R IV  CKG D I QAQSGTGKTATF   ILQ +D  + + QALVL+PTRELA QI+ V+ ALGDY+ V+ HAC+GGT++ ED R L  G HVV GTPGRV DM+RR+ LR  +IKM VL
Sbjct:   11 DRMEFNTSKEVTVAPTFEDMHLKESLLRGIYAYGYESPSAVQSRAIVQICKGRDTIAQAQSGTGKTATFSISILQVIDTVVRESQALVLSPTRELATQIQSVIMALGDYMNVQCHACIGGTNIGEDIRKLDYGQHVVSGTPGRVADMIRRRHLRTRHIKMLVL 173          
BLAST of CV713067 vs. ExPASy Swiss-Prot
Match: FAL1_NEOFI (ATP-dependent RNA helicase fal1 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=fal1 PE=3 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 2.837e-46
Identity = 98/163 (60.12%), Postives = 120/163 (73.62%), Query Frame = 2
Query:  227 DGQDFFTSYD-EVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVL 712
            D  +F TS +  V  +F+ M L+E+LLRGIYAYG+E PSA+Q R IV  CKG D I QAQSGTGKTATF   ILQ +D  + + QALVL+PTRELA QI+ V+ ALGDY+ V+ HAC+GGT++ ED R L  G HVV GTPGRV DM+RR+ LR  +IKM VL
Sbjct:   11 DRLEFSTSKEVTVAPTFEDMHLKESLLRGIYAYGYESPSAVQSRAIVQICKGRDTIAQAQSGTGKTATFSISILQVIDTVVRETQALVLSPTRELATQIQSVIMALGDYMNVQCHACIGGTNIGEDIRKLDYGQHVVSGTPGRVADMIRRRHLRTRHIKMLVL 173          
BLAST of CV713067 vs. ExPASy Swiss-Prot
Match: IF4A_DICDI (Eukaryotic initiation factor 4A OS=Dictyostelium discoideum GN=tifA PE=3 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 4.839e-46
Identity = 96/170 (56.47%), Postives = 124/170 (72.94%), Query Frame = 2
Query:  221 STDGQDF-----FTSYD-EVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVL 712
            S DG  F     FTS + EV  +F++MGL+E LLRGI+ YGFEKPSAIQQR I+P  KG D I QAQSGTGKTATF  G LQ ++  +   Q L+L+PTRELAQQI+KV  AL +++ ++VHACVGG ++ +D + L+ GVH+V GTPGRV DM+ R+SL   +IKM +L
Sbjct:   11 SNDGSSFKLNETFTSSEVEVKPTFESMGLREELLRGIFNYGFEKPSAIQQRAILPIIKGRDTIAQAQSGTGKTATFSIGALQCVEVNVRSPQVLILSPTRELAQQIQKVALALSEFMNIQVHACVGGKNLSDDVKKLETGVHIVSGTPGRVLDMITRKSLPTRHIKMMIL 180          
BLAST of CV713067 vs. ExPASy Swiss-Prot
Match: RH2_ORYSJ (DEAD-box ATP-dependent RNA helicase 2 OS=Oryza sativa subsp. japonica GN=Os01g0639100 PE=2 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 6.320e-46
Identity = 89/152 (58.55%), Postives = 117/152 (76.97%), Query Frame = 2
Query:  257 EVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVL 712
            EV  SFD MG++++LLRGIYAYGFEKPSAIQQR ++P   G DVI QAQSGTGKT+     + Q +D  + + QAL+L+PTRELA Q E+VM A+GD++ ++VHAC+GG S+ ED R L+ GVHVV GTPGRV DM++R++LR   IK+ +L
Sbjct:   28 EVISSFDQMGIRDDLLRGIYAYGFEKPSAIQQRAVLPIISGRDVIAQAQSGTGKTSMISLSVCQIVDTAVREVQALILSPTRELAAQTERVMLAIGDFINIQVHACIGGKSIGEDIRKLEHGVHVVSGTPGRVCDMIKRRTLRTRAIKLLIL 179          
BLAST of CV713067 vs. ExPASy Swiss-Prot
Match: FAL1_SCHPO (ATP-dependent RNA helicase fal1 OS=Schizosaccharomyces pombe GN=tif412 PE=1 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 6.320e-46
Identity = 91/148 (61.49%), Postives = 113/148 (76.35%), Query Frame = 2
Query:  269 SFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVL 712
            SF+ M L+E+LLRGIYAYG+E PSA+Q R I+  CKG DVI QAQSGTGKTATF  GILQ +D  +   QAL+L+PTRELA QI+ V+ ALGD++ V+ HAC+GGTSV  D + L  G HVV GTPGRV DM+RR++LR   +KM +L
Sbjct:   22 SFEEMNLKEDLLRGIYAYGYETPSAVQSRAIIQICKGRDVIAQAQSGTGKTATFSIGILQSIDLSVRDTQALILSPTRELAVQIQNVVLALGDHMNVQCHACIGGTSVGNDIKKLDYGQHVVSGTPGRVTDMIRRRNLRTRNVKMLIL 169          
BLAST of CV713067 vs. ExPASy Swiss-Prot
Match: FAL1_PICGU (ATP-dependent RNA helicase FAL1 OS=Pichia guilliermondii GN=FAL1 PE=3 SV=2)

HSP 1 Score: 184.111 bits (466), Expect = 6.320e-46
Identity = 88/152 (57.89%), Postives = 113/152 (74.34%), Query Frame = 2
Query:  257 EVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVL 712
            ++Y +F++M L+  LL+GIY YGFE PSAIQ R I+   +G D I QAQSGTGKTATF  GIL  +D     CQALVL+PTRELAQQIE V+  LGDY+ V+ HAC+GGT V ED + LQ G H++ GTPGRV DM++R+++ P ++KM VL
Sbjct:   21 KIYPTFESMNLKPELLKGIYNYGFEAPSAIQSRAIMQIIRGRDTIAQAQSGTGKTATFSIGILSSIDTKSKDCQALVLSPTRELAQQIENVIEHLGDYMNVRSHACIGGTQVGEDVKKLQQGQHIISGTPGRVLDMIKRRNIMPRHVKMLVL 172          
BLAST of CV713067 vs. ExPASy Swiss-Prot
Match: FAL1_EMENI (ATP-dependent RNA helicase fal1 OS=Emericella nidulans GN=fal1 PE=3 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 8.254e-46
Identity = 97/163 (59.51%), Postives = 119/163 (73.01%), Query Frame = 2
Query:  227 DGQDFFTSYD-EVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVL 712
            D  +F TS +  V  +F+ M L+E+LLRGIYAYG+E PSA+Q R IV  CKG D I QAQSGTGKTATF    LQ +D  + + QALVL+PTRELA QI+ V+ ALGDY+ V+ HAC+GGT++ ED R L  G HVV GTPGRV DM+RR+ LR  +IKM VL
Sbjct:   11 DKMEFNTSKEVTVAPTFEDMHLKESLLRGIYAYGYESPSAVQSRAIVQICKGRDTIAQAQSGTGKTATFSISALQVIDTVVRETQALVLSPTRELATQIQSVIMALGDYMNVQCHACIGGTNIGEDIRKLDYGQHVVSGTPGRVADMIRRRHLRTRHIKMLVL 173          
BLAST of CV713067 vs. ExPASy Swiss-Prot
Match: IF4A_PICGU (ATP-dependent RNA helicase eIF4A OS=Pichia guilliermondii GN=TIF1 PE=3 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 1.408e-45
Identity = 90/167 (53.89%), Postives = 118/167 (70.66%), Query Frame = 2
Query:  212 ELLSTDGQDFFTSYDEVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVL 712
            E    D     T+YD V  SFD + L+ N++RGI+ YG+E PSAIQQR I+P  +G DV+ QAQSGTGKTATF    LQ++D  L   QAL+LAPTRELA QI+ V+  +G YL V VHA +GGTS+++D    ++GV +VVGTPGRVFDM+ R+  R D +KMF++
Sbjct:    4 EFNEIDANTIETNYDNVVYSFDDLNLKPNIVRGIFGYGYESPSAIQQRAILPITEGRDVLAQAQSGTGKTATFTISALQRIDENLKATQALILAPTRELALQIQNVITHIGLYLNVTVHASIGGTSMKDDIEAFKSGVQIVVGTPGRVFDMIERRFFRTDKVKMFIM 170          
BLAST of CV713067 vs. ExPASy Swiss-Prot
Match: IF4A_KLULA (ATP-dependent RNA helicase eIF4A OS=Kluyveromyces lactis GN=TIF1 PE=3 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 3.137e-45
Identity = 90/162 (55.56%), Postives = 117/162 (72.22%), Query Frame = 2
Query:  227 DGQDFFTSYDEVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVL 712
            D     ++YD+V  SFD + L+E LLRGI+ YGF +PSAIQQR I+P  +G DV+ QAQSGTGKT TF    LQ +D  +   Q L+LAPTRELA QI+KV+ AL  ++ VKVHAC+GGTS++ED   L+ G  ++VGTPGRVFDM+ R+  + D IKMF+L
Sbjct:    9 DENQIQSTYDKVVYSFDDLKLKEELLRGIFGYGFVEPSAIQQRAILPIIEGKDVLAQAQSGTGKTGTFSIAALQNIDEKIKAPQGLILAPTRELALQIQKVVMALAIHMDVKVHACIGGTSLQEDSEALRGGAQIIVGTPGRVFDMIDRRIFKTDNIKMFIL 170          
The following BLAST results are available for this feature:
BLAST of CV713067 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
FAL1_ASPTN1.663e-4660.12ATP-dependent RNA helicase fal1 OS=Aspergillus ter... [more]
FAL1_ASPNC2.172e-4660.12ATP-dependent RNA helicase fal1 OS=Aspergillus nig... [more]
FAL1_NEOFI2.837e-4660.12ATP-dependent RNA helicase fal1 OS=Neosartorya fis... [more]
IF4A_DICDI4.839e-4656.47Eukaryotic initiation factor 4A OS=Dictyostelium d... [more]
RH2_ORYSJ6.320e-4658.55DEAD-box ATP-dependent RNA helicase 2 OS=Oryza sat... [more]
FAL1_SCHPO6.320e-4661.49ATP-dependent RNA helicase fal1 OS=Schizosaccharom... [more]
FAL1_PICGU6.320e-4657.89ATP-dependent RNA helicase FAL1 OS=Pichia guillier... [more]
FAL1_EMENI8.254e-4659.51ATP-dependent RNA helicase fal1 OS=Emericella nidu... [more]
IF4A_PICGU1.408e-4553.89ATP-dependent RNA helicase eIF4A OS=Pichia guillie... [more]
IF4A_KLULA3.137e-4555.56ATP-dependent RNA helicase eIF4A OS=Kluyveromyces ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0002E11_r Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0002E11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV713067 ID=CV713067; Name=CV713067; organism=Citrus sinensis; type=EST; length=713bp
TCCCCCGGGGCTGCAGGCGCAGATCCGAGGAGTTTGGTAACCCTAGCAAC
TATTTTCTCTTAAATCAATCTTCTCCTTCTCTTTGAAAAAAAAAAGAAAA
CCAACTCTTTCTCTCCATTTTAATCACCATCATCAAAGCTTTGCAGATAT
GGCTGGTTTGGCACCCGAAGGATCTCAATTTGATGCTCGTCAGTATGACA
CCAAGATGAATGAACTGCTCTCTACTGATGGGCAAGATTTCTTCACTTCT
TATGATGAAGTTTATGACAGTTTTGATGCAATGGGACTGCAGGAAAACCT
TTTGAGGGGAATCTATGCTTATGGGTTTGAGAAGCCTTCTGCTATTCAGC
AAAGGGGAATTGTTCCCTTCTGCAAGGGACTTGACGTCATTCAGCAGGCT
CAGTCTGGAACTGGGAAAACAGCAACTTTCTGCTCTGGAATTTTGCAGCA
ACTTGATTATGGTCTTGTCCAATGTCAGGCCCTGGTGTTGGCACCCACTA
GGGAACTAGCTCAACAAATTGAGAAAGTAATGAGGGCACTTGGTGATTAT
CTTGGTGTTAAGGTTCATGCTTGTGTCGGTGGGACAAGTGTTCGCGAGGA
TCAGCGCATTCTTCAAGCTGGTGTTCATGTTGTTGTTGGCACTCCTGGTC
GTGTGTTTGACATGCTGCGCCGACAGTCTTTACGCCCTGATTACATTAAG
ATGTTTGTACTGG
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