CV713052

Overview
NameCV713052
Unique NameCV713052
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length672
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV713052 vs. ExPASy Swiss-Prot
Match: ATPI_ANGEV (ATP synthase subunit a, chloroplastic OS=Angiopteris evecta GN=atpI PE=3 SV=1)

HSP 1 Score: 342.428 bits (877), Expect = 1.247e-93
Identity = 171/216 (79.17%), Postives = 185/216 (85.65%), Query Frame = 3
Query:    3 FQVHAQVLITSWVVIAILLGSAFIAVRNPQTVPTATQNFFEYVLEFIRDVSKTQIGEE-YGPWVPFIGTLFLFIFVSNWSGALLPWKIIELPHGELAAPTNDINTTVALALLTSIAYFYAGLSKKGLGYFSKYIQPTPILLPINILEDFTKPLSLSFRLFGNILADEXXXXXXXXXXXXXXXXXXMFLGLFTSGIQALIFATLAAAYIGESMEGHH 647
            FQVHAQVLITSWVVIAILLG + +A R+ QT+PT +QNF EYVLEFIRD+++TQIGEE Y PWVPFIGT+FLFIFVSNWSGAL PW+II+LPHGELAAPTNDINTTVALALLTS+AYFYAGL K+GL YF KYIQPTP+LLPINILEDFTKPLSLSFRLFGNILADE                  MFLGLFTS IQALIFATLAAAYIGESMEGHH
Sbjct:   33 FQVHAQVLITSWVVIAILLGLSIVATRDLQTIPTGSQNFIEYVLEFIRDLTRTQIGEEEYRPWVPFIGTMFLFIFVSNWSGALFPWRIIQLPHGELAAPTNDINTTVALALLTSVAYFYAGLHKRGLSYFGKYIQPTPVLLPINILEDFTKPLSLSFRLFGNILADELVVAVLISLVPLVVPIPMMFLGLFTSAIQALIFATLAAAYIGESMEGHH 248          
BLAST of CV713052 vs. ExPASy Swiss-Prot
Match: ATPI_PHYPA (ATP synthase subunit a, chloroplastic OS=Physcomitrella patens GN=atpI PE=3 SV=1)

HSP 1 Score: 339.347 bits (869), Expect = 1.056e-92
Identity = 169/216 (78.24%), Postives = 185/216 (85.65%), Query Frame = 3
Query:    3 FQVHAQVLITSWVVIAILLGSAFIAVRNPQTVPTATQNFFEYVLEFIRDVSKTQIGEE-YGPWVPFIGTLFLFIFVSNWSGALLPWKIIELPHGELAAPTNDINTTVALALLTSIAYFYAGLSKKGLGYFSKYIQPTPILLPINILEDFTKPLSLSFRLFGNILADEXXXXXXXXXXXXXXXXXXMFLGLFTSGIQALIFATLAAAYIGESMEGHH 647
            F+VHAQVLITSW+VIAILL  A +A R+ QT+PT+ QNF EYVLEFIRD+++TQIGEE Y PWVPFIGT+FLFIFVSNWSGALLPW+++ELPHGELAAPTNDINTTVALALLTS+AYFYAGL K+GL YF KYIQPTP+LLPINILEDFTKPLSLSFRLFGNILADE                  MFLGLFTS IQALIFATLAAAYIGESMEGHH
Sbjct:   34 FEVHAQVLITSWIVIAILLSLAVLATRDLQTIPTSGQNFVEYVLEFIRDLTRTQIGEEEYRPWVPFIGTMFLFIFVSNWSGALLPWRVLELPHGELAAPTNDINTTVALALLTSVAYFYAGLHKRGLNYFGKYIQPTPVLLPINILEDFTKPLSLSFRLFGNILADELVVAVLISLVPLVVPIPMMFLGLFTSAIQALIFATLAAAYIGESMEGHH 249          
BLAST of CV713052 vs. ExPASy Swiss-Prot
Match: ATPI_PSINU (ATP synthase subunit a, chloroplastic OS=Psilotum nudum GN=atpI PE=3 SV=1)

HSP 1 Score: 337.421 bits (864), Expect = 4.011e-92
Identity = 170/216 (78.70%), Postives = 182/216 (84.26%), Query Frame = 3
Query:    3 FQVHAQVLITSWVVIAILLGSAFIAVRNPQTVPTATQNFFEYVLEFIRDVSKTQIGEE-YGPWVPFIGTLFLFIFVSNWSGALLPWKIIELPHGELAAPTNDINTTVALALLTSIAYFYAGLSKKGLGYFSKYIQPTPILLPINILEDFTKPLSLSFRLFGNILADEXXXXXXXXXXXXXXXXXXMFLGLFTSGIQALIFATLAAAYIGESMEGHH 647
            FQVHAQVLITSWVVI +L G AF+  R+ +T+PT  QNF EYVLEFIRD+++TQIGEE Y PWVPFIGTLFLFIFVSNWSGAL PWKII+LPHGELAAPTNDINTTVALALLTS+AYFYAGL KKGL YF +YI+PTPILLPINILEDFTKPLSLSFRLFGNILADE                  MFLGLFTS IQALIFATLAAAYIGESMEGHH
Sbjct:   33 FQVHAQVLITSWVVIVLLSGLAFVTTRDLRTIPTGGQNFVEYVLEFIRDLTRTQIGEEEYRPWVPFIGTLFLFIFVSNWSGALFPWKIIQLPHGELAAPTNDINTTVALALLTSVAYFYAGLHKKGLSYFGRYIKPTPILLPINILEDFTKPLSLSFRLFGNILADELVVAVLISLVPLVVPIPMMFLGLFTSAIQALIFATLAAAYIGESMEGHH 248          
BLAST of CV713052 vs. ExPASy Swiss-Prot
Match: ATPI_ANTFO (ATP synthase subunit a, chloroplastic OS=Anthoceros formosae GN=atpI PE=2 SV=1)

HSP 1 Score: 336.65 bits (862), Expect = 6.842e-92
Identity = 170/216 (78.70%), Postives = 182/216 (84.26%), Query Frame = 3
Query:    3 FQVHAQVLITSWVVIAILLGSAFIAVRNPQTVPTATQNFFEYVLEFIRDVSKTQIGEE-YGPWVPFIGTLFLFIFVSNWSGALLPWKIIELPHGELAAPTNDINTTVALALLTSIAYFYAGLSKKGLGYFSKYIQPTPILLPINILEDFTKPLSLSFRLFGNILADEXXXXXXXXXXXXXXXXXXMFLGLFTSGIQALIFATLAAAYIGESMEGHH 647
            FQVHAQVLITSW+VIAILLG A +A +N QT+PT+ QNF EY+LEFIRD+++TQIGEE Y PWVPFIGT+FLFIFVSNWSGALLPW+I ELPHGELAAPTNDINTTVALAL TS+AYFYAGL KKGL Y  KYIQPTPILLPINILEDFTKPL LSFRLFGNILADE                  MFLGLFTS IQALIFATLAAAYIGESMEGHH
Sbjct:   33 FQVHAQVLITSWIVIAILLGLAILATQNLQTIPTSGQNFVEYILEFIRDLTRTQIGEEEYRPWVPFIGTMFLFIFVSNWSGALLPWRIFELPHGELAAPTNDINTTVALALPTSVAYFYAGLRKKGLSYSGKYIQPTPILLPINILEDFTKPLPLSFRLFGNILADELVVAVPISLVPLVVPIPMMFLGLFTSAIQALIFATLAAAYIGESMEGHH 248          
BLAST of CV713052 vs. ExPASy Swiss-Prot
Match: ATPI_MARPO (ATP synthase subunit a, chloroplastic OS=Marchantia polymorpha GN=atpI PE=3 SV=1)

HSP 1 Score: 335.88 bits (860), Expect = 1.167e-91
Identity = 169/216 (78.24%), Postives = 181/216 (83.80%), Query Frame = 3
Query:    3 FQVHAQVLITSWVVIAILLGSAFIAVRNPQTVPTATQNFFEYVLEFIRDVSKTQIGEE-YGPWVPFIGTLFLFIFVSNWSGALLPWKIIELPHGELAAPTNDINTTVALALLTSIAYFYAGLSKKGLGYFSKYIQPTPILLPINILEDFTKPLSLSFRLFGNILADEXXXXXXXXXXXXXXXXXXMFLGLFTSGIQALIFATLAAAYIGESMEGHH 647
            FQVHAQVLITSW+VIAILL  A +A RN QT+P   QNF EYVLEFIRD+++TQIGEE Y PWVPFIGT+FLFIFVSNWSGAL PW++ ELP+GELAAPTNDINTTVALALLTS+AYFYAGL KKGL YF KYIQPTP+LLPINILEDFTKPLSLSFRLFGNILADE                  MFLGLFTS IQALIFATLAAAYIGESMEGHH
Sbjct:   33 FQVHAQVLITSWIVIAILLSLAVLATRNLQTIPMGGQNFVEYVLEFIRDLTRTQIGEEEYRPWVPFIGTMFLFIFVSNWSGALFPWRVFELPNGELAAPTNDINTTVALALLTSVAYFYAGLHKKGLSYFGKYIQPTPVLLPINILEDFTKPLSLSFRLFGNILADELVVAVLISLVPLVVPIPMMFLGLFTSAIQALIFATLAAAYIGESMEGHH 248          
BLAST of CV713052 vs. ExPASy Swiss-Prot
Match: ATPI_CHAGL (ATP synthase subunit a, chloroplastic OS=Chaetosphaeridium globosum GN=atpI PE=3 SV=1)

HSP 1 Score: 335.495 bits (859), Expect = 1.524e-91
Identity = 166/216 (76.85%), Postives = 182/216 (84.26%), Query Frame = 3
Query:    3 FQVHAQVLITSWVVIAILLGSAFIAVRNPQTVPTATQNFFEYVLEFIRDVSKTQIGEE-YGPWVPFIGTLFLFIFVSNWSGALLPWKIIELPHGELAAPTNDINTTVALALLTSIAYFYAGLSKKGLGYFSKYIQPTPILLPINILEDFTKPLSLSFRLFGNILADEXXXXXXXXXXXXXXXXXXMFLGLFTSGIQALIFATLAAAYIGESMEGHH 647
            FQVHAQVLITSW V+ +LLG A IA R  +T+P  TQNF EYVLEFIRD+++TQIGEE Y  W+PF+GTLFLFIFVSNWSGAL+PWK+IELP+GELAAPTNDINTTVALALLTS+AYFYAGL+KKGL YF KYIQPTP+LLPINILEDFTKPLSLSFRLFGNILADE                  MFLGLFTSGIQALIFATLA AYIGES+EGHH
Sbjct:   28 FQVHAQVLITSWFVLGLLLGIALIATRKLETIPNTTQNFIEYVLEFIRDLTRTQIGEEEYRSWIPFVGTLFLFIFVSNWSGALIPWKVIELPNGELAAPTNDINTTVALALLTSVAYFYAGLNKKGLSYFGKYIQPTPVLLPINILEDFTKPLSLSFRLFGNILADELVVAVLVSLVPLVIPVPMMFLGLFTSGIQALIFATLAGAYIGESLEGHH 243          
BLAST of CV713052 vs. ExPASy Swiss-Prot
Match: ATPI_CHLAT (ATP synthase subunit a, chloroplastic OS=Chlorokybus atmophyticus GN=atpI PE=3 SV=2)

HSP 1 Score: 332.028 bits (850), Expect = 1.685e-90
Identity = 166/216 (76.85%), Postives = 183/216 (84.72%), Query Frame = 3
Query:    3 FQVHAQVLITSWVVIAILLGSAFIAVRNPQTVPTATQNFFEYVLEFIRDVSKTQIGEE-YGPWVPFIGTLFLFIFVSNWSGALLPWKIIELPHGELAAPTNDINTTVALALLTSIAYFYAGLSKKGLGYFSKYIQPTPILLPINILEDFTKPLSLSFRLFGNILADEXXXXXXXXXXXXXXXXXXMFLGLFTSGIQALIFATLAAAYIGESMEGHH 647
            FQVH QVLITSWVV+AI++ ++ IA RN Q +P+ TQNF EYVLEFIRD++KTQ+GEE Y  WVPF+GTLFLFIF+SNWSGAL+PW++IELP GELAAPTNDINTTVALALLTS+AYFYAGLSKKGL YF KYIQPTPILLPINILEDFTKPLSLSFRLFGNILADE                  M LGLFTSGIQALIFATLAAAYIGES+EGHH
Sbjct:   34 FQVHGQVLITSWVVMAIIIITSVIASRNLQPIPSGTQNFLEYVLEFIRDLTKTQVGEEEYRSWVPFVGTLFLFIFISNWSGALIPWRLIELPSGELAAPTNDINTTVALALLTSVAYFYAGLSKKGLSYFGKYIQPTPILLPINILEDFTKPLSLSFRLFGNILADELVVAVLISLVPLVIPVPMMLLGLFTSGIQALIFATLAAAYIGESLEGHH 249          
BLAST of CV713052 vs. ExPASy Swiss-Prot
Match: ATPI_ADICA (ATP synthase subunit a, chloroplastic OS=Adiantum capillus-veneris GN=atpI PE=2 SV=2)

HSP 1 Score: 330.102 bits (845), Expect = 6.404e-90
Identity = 165/216 (76.39%), Postives = 179/216 (82.87%), Query Frame = 3
Query:    3 FQVHAQVLITSWVVIAILLGSAFIAVRNPQTVPTATQNFFEYVLEFIRDVSKTQIGEE-YGPWVPFIGTLFLFIFVSNWSGALLPWKIIELPHGELAAPTNDINTTVALALLTSIAYFYAGLSKKGLGYFSKYIQPTPILLPINILEDFTKPLSLSFRLFGNILADEXXXXXXXXXXXXXXXXXXMFLGLFTSGIQALIFATLAAAYIGESMEGHH 647
            FQVHAQVLITSWVV+AIL+        N Q++PT TQNF EYVLEFIRD+++TQ+GEE Y PWVPFIGT+FLFIF SNWSGALLPW++I+LPHGELAAPTNDINTTVALALLTS+AYFYAGL K+G  YF KYIQPTPILLPINILEDFTKPLSLSFRLFGNILADE                  M LGLFTSGIQALIFATLAAAYIGESMEGHH
Sbjct:   33 FQVHAQVLITSWVVVAILVALPATTTGNLQSIPTGTQNFIEYVLEFIRDLTRTQMGEEGYRPWVPFIGTMFLFIFASNWSGALLPWRVIQLPHGELAAPTNDINTTVALALLTSVAYFYAGLYKRGFSYFGKYIQPTPILLPINILEDFTKPLSLSFRLFGNILADELVVAVLVSLVPLIVPVPMMLLGLFTSGIQALIFATLAAAYIGESMEGHH 248          
BLAST of CV713052 vs. ExPASy Swiss-Prot
Match: ATPI_WELMI (ATP synthase subunit a, chloroplastic OS=Welwitschia mirabilis GN=atpI PE=3 SV=1)

HSP 1 Score: 329.331 bits (843), Expect = 1.092e-89
Identity = 163/216 (75.46%), Postives = 182/216 (84.26%), Query Frame = 3
Query:    3 FQVHAQVLITSWVVIAILLGSAFIAVRNPQTVPTATQNFFEYVLEFIRDVSKTQIGEE-YGPWVPFIGTLFLFIFVSNWSGALLPWKIIELPHGELAAPTNDINTTVALALLTSIAYFYAGLSKKGLGYFSKYIQPTPILLPINILEDFTKPLSLSFRLFGNILADEXXXXXXXXXXXXXXXXXXMFLGLFTSGIQALIFATLAAAYIGESMEGHH 647
            F+VH QVL+TSW V+A+LLG A + VR+PQT+PT  QNF EY+LEFIRD+++TQIGEE Y  WVPFIGTLFLFIFVSNWSGAL+PW +++LPHGELAAPTNDINTTVALALLTS+AYFYAGL+KKGL +F KYIQPTPILLPINILEDFTKPLSLSFRLFGNILADE                  M LGLFTSGIQALIFATLAAAYIGES+E HH
Sbjct:   33 FEVHGQVLLTSWFVLAVLLGLAVLTVRDPQTIPTGQQNFAEYLLEFIRDLARTQIGEEEYISWVPFIGTLFLFIFVSNWSGALVPWGVVKLPHGELAAPTNDINTTVALALLTSVAYFYAGLAKKGLSFFGKYIQPTPILLPINILEDFTKPLSLSFRLFGNILADELVVAVLVSLVPLVVPIPVMLLGLFTSGIQALIFATLAAAYIGESLENHH 248          
BLAST of CV713052 vs. ExPASy Swiss-Prot
Match: ATPI_STAPU (ATP synthase subunit a, chloroplastic OS=Staurastrum punctulatum GN=atpI PE=3 SV=1)

HSP 1 Score: 328.946 bits (842), Expect = 1.427e-89
Identity = 166/215 (77.21%), Postives = 179/215 (83.26%), Query Frame = 3
Query:    6 QVHAQVLITSWVVIAILLGSAFIAVRNPQTVPTATQNFFEYVLEFIRDVSKTQIGEE-YGPWVPFIGTLFLFIFVSNWSGALLPWKIIELPHGELAAPTNDINTTVALALLTSIAYFYAGLSKKGLGYFSKYIQPTPILLPINILEDFTKPLSLSFRLFGNILADEXXXXXXXXXXXXXXXXXXMFLGLFTSGIQALIFATLAAAYIGESMEGHH 647
            +VH QVLITSWVVI ILL  AF+  R  +TVP ATQNF EYVL+FIRD+++TQIGEE Y  WVPF+GTLFLFIFVSNWSGAL+PWK+IELPHGELAAPTNDINTTVALALLTS AYFYAG  K+GL YF KY+QPTP+LLPINILEDFTKPLSLSFRLFGNILADE                  MFLGLFTSGIQALIFATLAAAYIGESMEGHH
Sbjct:   34 RVHGQVLITSWVVIGILLTVAFLGTRKLETVPNATQNFVEYVLQFIRDLARTQIGEEEYRDWVPFVGTLFLFIFVSNWSGALVPWKLIELPHGELAAPTNDINTTVALALLTSGAYFYAGFHKRGLSYFGKYLQPTPVLLPINILEDFTKPLSLSFRLFGNILADELVVAVLVSLVPLVVPIPMMFLGLFTSGIQALIFATLAAAYIGESMEGHH 248          
The following BLAST results are available for this feature:
BLAST of CV713052 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 365
Match NameE-valueIdentityDescription
ATPI_ANGEV1.247e-9379.17ATP synthase subunit a, chloroplastic OS=Angiopter... [more]
ATPI_PHYPA1.056e-9278.24ATP synthase subunit a, chloroplastic OS=Physcomit... [more]
ATPI_PSINU4.011e-9278.70ATP synthase subunit a, chloroplastic OS=Psilotum ... [more]
ATPI_ANTFO6.842e-9278.70ATP synthase subunit a, chloroplastic OS=Anthocero... [more]
ATPI_MARPO1.167e-9178.24ATP synthase subunit a, chloroplastic OS=Marchanti... [more]
ATPI_CHAGL1.524e-9176.85ATP synthase subunit a, chloroplastic OS=Chaetosph... [more]
ATPI_CHLAT1.685e-9076.85ATP synthase subunit a, chloroplastic OS=Chlorokyb... [more]
ATPI_ADICA6.404e-9076.39ATP synthase subunit a, chloroplastic OS=Adiantum ... [more]
ATPI_WELMI1.092e-8975.46ATP synthase subunit a, chloroplastic OS=Welwitsch... [more]
ATPI_STAPU1.427e-8977.21ATP synthase subunit a, chloroplastic OS=Staurastr... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0002E02_r Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0002E02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV713052 ID=CV713052; Name=CV713052; organism=Citrus sinensis; type=EST; length=672bp
GGTTCCAGGTCCATGCCCAAGTACTTATTACTTCTTGGGTTGTAATTGCT
ATCTTATTAGGTTCAGCCTTTATAGCCGTTCGGAATCCACAAACCGTTCC
GACTGCCACTCAAAATTTCTTCGAATATGTCCTTGAATTCATTCGAGACG
TGAGCAAAACTCAGATTGGAGAAGAATATGGCCCATGGGTTCCCTTTATT
GGAACTCTGTTTCTTTTTATTTTTGTTTCTAATTGGTCAGGTGCTCTTTT
ACCTTGGAAAATCATAGAGTTACCTCATGGGGAGTTAGCCGCACCCACGA
ATGATATAAATACTACCGTTGCTTTAGCTTTGCTCACGTCAATAGCATAC
TTCTATGCGGGTCTTTCCAAAAAGGGATTAGGCTATTTCAGTAAATACAT
TCAACCGACTCCAATTCTTTTACCCATTAACATTTTAGAAGATTTCACAA
AACCTCTATCACTTAGTTTTCGACTTTTTGGGAATATATTAGCCGATGAA
TTAGTAGTTGTTGTTCTTGTTTCTTTAGTACCTTTAGTGGTTCCTATACC
CGTCATGTTCCTTGGATTATTTACAAGCGGTATTCAAGCTCTTATTTTTG
CAACTTTAGCTGCGGCTTATATAGGCGAATCTATGGAGGGACATCATTGA
CTCGTTTTCGAAATAGTCTTTT
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