CV713027

Overview
NameCV713027
Unique NameCV713027
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length759
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV713027 vs. ExPASy Swiss-Prot
Match: ACOA_BACSU (Acetoin:2,6-dichlorophenolindophenol oxidoreductase subunit alpha OS=Bacillus subtilis GN=acoA PE=2 SV=2)

HSP 1 Score: 95.1301 bits (235), Expect = 4.332e-19
Identity = 60/174 (34.48%), Postives = 86/174 (49.43%), Query Frame = -2
Query:  243 SEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDSTKYRPVDEIEWWRTTQDPVTRFRKWI--ESNGWWNGDIESELRSSVRKQILHALQEAEKAEKPPISDLFTDVY 758
            ++G FH  LN +AV   PV+F+  NNG+  +TP       D    +  AY +  + VDG D LA+Y A   A E A   G P LIE +TYR   H   D  T Y+  DE       +D +  F+ ++  E++     DIE  +  S+ K    A+  +E +  P  S+L TDVY
Sbjct:  157 NQGTFHEGLNLAAVWNLPVVFVAENNGYGEATPFEYASACDSIADRAAAYNMPGVTVDGKDILAVYQAAEEAIERARNGGGPSLIECMTYRNYGHFEGDAQT-YKTKDERVEHLEEKDAIQGFKNYLLKETDANKLSDIEQRVSESIEK----AVSFSEDSPYPKDSELLTDVY 325          
BLAST of CV713027 vs. ExPASy Swiss-Prot
Match: ODPA1_ARATH (Pyruvate dehydrogenase E1 component subunit alpha-1, mitochondrial OS=Arabidopsis thaliana GN=At1g59900 PE=1 SV=2)

HSP 1 Score: 93.5893 bits (231), Expect = 1.260e-18
Identity = 56/172 (32.56%), Postives = 91/172 (52.91%), Query Frame = -2
Query:  243 SEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDSTKYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSSVRKQILHALQEAEKAEKPPISDLFTDVY 758
            ++G    ALN SA+ + P I +C NN + + T      +S     +G    V  ++VDG DA A+  A   A++ A+ +G PI++E  TYR   H+ SD  + YR  DEI   R  +DP+ R +K + S+         ++   +RK++  A+ +A+    P  S+LFT+VY
Sbjct:  200 NQGQLFEALNISALWDLPAILVCENNHYGMGTAEWRAAKSPSYYKRGDY--VPGLKVDGMDAFAVKQACKFAKQHALEKG-PIILEMDTYRYHGHSMSDPGSTYRTRDEISGVRQERDPIERIKKLVLSHDLATEKELKDMEKEIRKEVDDAIAKAKDCPMPEPSELFTNVY 368          
BLAST of CV713027 vs. ExPASy Swiss-Prot
Match: ODPA_MYCPN (Pyruvate dehydrogenase E1 component subunit alpha OS=Mycoplasma pneumoniae GN=pdhA PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.667e-18
Identity = 57/191 (29.84%), Postives = 93/191 (48.69%), Query Frame = -2
Query:  186 SEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDSTKYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSSVRKQILHALQEAEKAEKPPISDLFTDVYDVSPSNLREQEHSLRETIK 758
            +EG+F+ A+N +++ +   +F   NN +AIST    +        K  A  +  IRVDGND +A Y A+H A   A     P+LIE  ++R G HTTSDD + YR  +E E      DPV R R ++   G      E E+ + + +++  A +         + ++F   Y+    +L  Q+   ++  K
Sbjct:  168 AEGEFYEAMNIASIHKWNSVFCINNNQFAISTRTKLESAVSDLSTKAIAVNIPRIRVDGNDLIASYEAMHEAANYARSGNGPVLIEFFSWRQGPHTTSDDPSIYRTKEE-EAEAMKSDPVKRLRNFLFDRGILTPQQEEEMVAKIEQEVQAAYEVMVSKTPVTLDEVFDYNYEKLTPDLARQKAEAKKYFK 357          
BLAST of CV713027 vs. ExPASy Swiss-Prot
Match: ODPA_RICBR (Pyruvate dehydrogenase E1 component subunit alpha OS=Rickettsia bellii (strain RML369-C) GN=pdhA PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.104e-17
Identity = 48/172 (27.91%), Postives = 92/172 (53.49%), Query Frame = -2
Query:  243 SEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDSTKYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSSVRKQILHALQEAEKAEKPPISDLFTDVY 758
            ++G  + A N +A+   PV++I  NN +++ T ++          KG ++G++  +++G D   +Y  V  A E       P+++E  TYR   H+ SD + KYR  +E+E ++  +DP+T  RK I  N + +     E+  SV++ +  A++ +E +  P   +L+T +Y
Sbjct:  156 NQGQVYEAFNMAALWGLPVVYIIENNEYSMGTSVARSTFMRDLYKKGESFGIKGFQLNGMDFEEMYDGVKQAAEYVRENSMPLILEVKTYRYRGHSMSDPA-KYRSKEEVETYK-ERDPITEIRKIILENNYASEADLKEIEQSVKEIVKEAVEFSENSPLPNEEELYTQIY 325          
BLAST of CV713027 vs. ExPASy Swiss-Prot
Match: ODPA_CAEEL (Probable pyruvate dehydrogenase E1 component subunit alpha, mitochondrial OS=Caenorhabditis elegans GN=T05H10.6 PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.104e-17
Identity = 55/177 (31.07%), Postives = 87/177 (49.15%), Query Frame = -2
Query:  228 SEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDSTKYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSSVRKQILHALQEAEKAEKPPISDLFTDVYDVSPS 758
            ++G    A N + + + PV+F+C NNG+ + T       S     +G    V  I VDG D LA+  A   A+E       P+++E  TYR   H+ SD  T YR  +EI+  R T+DP+T F+  I ++     +    +   VRK++  AL+ A      P   L+ D+Y  +P+
Sbjct:  194 NQGQLFEATNMAKLWDLPVLFVCENNGFGMGTTAERSSASTEYYTRGDY--VPGIWVDGMDILAVREATKWAKEYCDSGKGPLMMEMATYRYHGHSMSDPGTSYRTREEIQEVRKTRDPITGFKDRIITSSLATEEELKAIDKEVRKEVDEALKIATSDGVLPPEALYADIYHNTPA 368          
BLAST of CV713027 vs. ExPASy Swiss-Prot
Match: ODPA_SOLTU (Pyruvate dehydrogenase E1 component subunit alpha, mitochondrial OS=Solanum tuberosum PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 9.032e-17
Identity = 56/172 (32.56%), Postives = 88/172 (51.16%), Query Frame = -2
Query:  243 SEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDSTKYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSSVRKQILHALQEAEKAEKPPISDLFTDVY 758
            ++G    ALN +A+ + P I +C NN + + T      +S     +G    V  +RVDG D  A+  A   A++ A+  G PI++E  TYR   H+ SD  + YR  DEI   R  +DPV R R  I ++         ++    RK +  A+ +A+++  P  S+LFT+VY
Sbjct:  202 NQGQLFEALNMAALWDLPAILVCENNHYGMGTAEWRAAKSPAYYKRGDY--VPGLRVDGMDVFAVKQACTFAKQHALKNG-PIILEMDTYRYHGHSMSDPGSTYRTRDEISGVRQERDPVERIRSLILAHNIATEAELKDIEKENRKVVDEAIAKAKESPMPDPSELFTNVY 370          
BLAST of CV713027 vs. ExPASy Swiss-Prot
Match: ODPA_DICDI (Pyruvate dehydrogenase E1 component subunit alpha, mitochondrial OS=Dictyostelium discoideum GN=pdhA PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 9.032e-17
Identity = 55/172 (31.98%), Postives = 86/172 (50.00%), Query Frame = -2
Query:  243 SEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDSTKYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSSVRKQILHALQEAEKAEKPPISDLFTDVY 758
            ++G    A N +++ + PVIFIC NN + + T  S +  + G     R + V  ++VDG D  A+  A   A E       PI++E  TYR   H+ SD    YR  +E+   R T+DP+   R+ I  N     D  + +  +VR ++  A ++A  A  P   +LFT+VY
Sbjct:  191 NQGQLFEAFNMASLWKLPVIFICENNKYGMGT--SQKRSTAGHDFYTRGHYVAGLKVDGMDVFAVKEAGKYAAEWCRAGNGPIILEMDTYRYVGHSMSDPGITYRTREEVNHVRQTRDPIENIRQIILDNKIATEDQLAAIEETVRDEMEKASEKAIAAPLPQARELFTNVY 360          
BLAST of CV713027 vs. ExPASy Swiss-Prot
Match: ODPAT_RAT (Pyruvate dehydrogenase E1 component subunit alpha, testis-specific form, mitochondrial OS=Rattus norvegicus GN=Pdha2 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.180e-16
Identity = 53/176 (30.11%), Postives = 88/176 (50.00%), Query Frame = -2
Query:  231 SEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDSTKYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSSVRKQILHALQEAEKAEKPPISDLFTDVYDVSP 758
            ++G    A N SA+ + P +FIC NN + + T I     S     KG  + +  +RV+G D L++  A   A +       PI++E  TYR   H+ SD    YR  +E++  R+  DP+   R+ + SN   + +   E+ + V+K++  A Q A    +PP+ DL   +Y  +P
Sbjct:  201 NQGQVFEAYNMSALWKLPCVFICENNRYGMGTAIERSAASTDYHKKG--FVIPGLRVNGMDILSVREATKFAADHCRSGKGPIVMELQTYRYHGHSMSDPGISYRTREEVQNVRSKSDPIMLLRERMISNNLSSVEELKEIDADVKKEVEEAAQFATTDPEPPLEDLANYLYHQNP 374          
BLAST of CV713027 vs. ExPASy Swiss-Prot
Match: ODPA_RICFE (Pyruvate dehydrogenase E1 component subunit alpha OS=Rickettsia felis GN=pdhA PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.432e-16
Identity = 48/172 (27.91%), Postives = 91/172 (52.91%), Query Frame = -2
Query:  243 SEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDSTKYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSSVRKQILHALQEAEKAEKPPISDLFTDVY 758
            ++G  + A N +A+   PV++I  NN +++ T ++          KG ++G++  ++DG D   +Y+    A E       P+++E  TYR   H+ SD + KYR  +E+E ++  +DP+   RK I  N +       E+  SV++ +  A++ +E +  P   +L+T+VY
Sbjct:  156 NQGQVYEAFNMAALWGLPVVYIIENNEYSMGTSVARSTFMRDLYKKGESFGIKGFQLDGMDFEEMYNGAKQAAEYVRENSFPLILEVKTYRYRGHSMSDPA-KYRSKEEVEQYK-ERDPLVIIRKTILDNKYATEADLKEIEQSVKEIVKEAVKFSENSPLPDEGELYTEVY 325          
BLAST of CV713027 vs. ExPASy Swiss-Prot
Match: ODPA_ZYMMO (Pyruvate dehydrogenase E1 component subunit alpha OS=Zymomonas mobilis GN=pdhA PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.855e-16
Identity = 50/171 (29.24%), Postives = 88/171 (51.46%), Query Frame = -2
Query:  246 SEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDSTKYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSSVRKQILHALQEAEKAEKPPISDLFTDV 758
            ++G  + A N +A+ + PVIF+  NNG+A+ T I           +G  +G+ ++ VDG D L +  A   A +       PI++E  TYR   H+ SD + +YR  +E+   +   DP+   +K + + G    ++  +L   +R+Q+  A   AEKA  P   +L+T++
Sbjct:  181 NQGQVYEAYNMAALWKLPVIFVIENNGYAMGTSIQRANAHTALSERGAGFGIPALVVDGMDVLEVRGAATVAVDWVQAGKGPIILEMKTYRYRGHSMSDPA-RYRSREEVNDMKENHDPLDNLKKDLFAAGVPEAEL-VKLDEDIRQQVKEAADFAEKAPLPADEELYTNI 349          
The following BLAST results are available for this feature:
BLAST of CV713027 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 60
Match NameE-valueIdentityDescription
ACOA_BACSU4.332e-1934.48Acetoin:2,6-dichlorophenolindophenol oxidoreductas... [more]
ODPA1_ARATH1.260e-1832.56Pyruvate dehydrogenase E1 component subunit alpha-... [more]
ODPA_MYCPN3.667e-1829.84Pyruvate dehydrogenase E1 component subunit alpha ... [more]
ODPA_RICBR3.104e-1727.91Pyruvate dehydrogenase E1 component subunit alpha ... [more]
ODPA_CAEEL3.104e-1731.07Probable pyruvate dehydrogenase E1 component subun... [more]
ODPA_SOLTU9.032e-1732.56Pyruvate dehydrogenase E1 component subunit alpha,... [more]
ODPA_DICDI9.032e-1731.98Pyruvate dehydrogenase E1 component subunit alpha,... [more]
ODPAT_RAT1.180e-1630.11Pyruvate dehydrogenase E1 component subunit alpha,... [more]
ODPA_RICFE3.432e-1627.91Pyruvate dehydrogenase E1 component subunit alpha ... [more]
ODPA_ZYMMO5.855e-1629.24Pyruvate dehydrogenase E1 component subunit alpha ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0002D13_r Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0002D13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV713027 ID=CV713027; Name=CV713027; organism=Citrus sinensis; type=EST; length=759bp
ATCCCCCCGGGCTGCAGGTTTTTTTTATTGCTTTTAACTACACTTGATTT
ATTAAACCAAATGTACTCAAAGATCAAAAGTACAAATTTCACAGAGATAA
ATGTTTGCTATGTGCAGTTGCACTTAATCAGTAGACACTTACTAAACTAA
ATAGGAACATTTGAGGGATAGTCTTGTGGGTGCTTTTTGATGGTCTCTCT
TAATGAGTGCTCTTGCTCGCGGAGGTTAGAAGGAGAAACATCATATACAT
CGGTAAACAAGTCTGAAATTGGAGGTTTCTCTGCTTTTTCGGCTTCTTGA
AGTGCATGTAATATCTGCTTCCTCACACTGCTTCTGAGCTCTGACTCAAT
GTCACCATTCCACCAACCATTGCTTTCTATCCACTTTCTAAATCTCGTAA
CAGGGTCTTGAGTTGTTCTCCACCATTCAATCTCATCAACTGGGCGGTAC
TTAGTGGAATCATCTGATGTCGTGTGGTGTCCTACTCGATATGTAAGAGC
CTCAATTAAGATAGGTCTGCCCTCACCAATCGCCATTTCACGTGCAGCAT
GAACTGCACTATATATGGCAAGAGCATCGTTACCATCTACACGGATACTT
CGGACTCCATATGCCCGGCCTTTAACAACGGCACCATCACTTCGAAACTG
GTCAGAAATAGGGGTACTGATAGCCCATCCATTGTTCCTACAGATAAAAA
TAACTGGGGCCTCCGTAACTGCCGAAAAATTTAAAGCAGCATGGAAATCT
CCCTCACTT
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