CV712871
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CV712871 vs. ExPASy Swiss-Prot
Match: DRS1_SCHPO (ATP-dependent RNA helicase drs1 OS=Schizosaccharomyces pombe GN=drs1 PE=2 SV=1) HSP 1 Score: 76.2554 bits (186), Expect = 2.149e-13 Identity = 43/120 (35.83%), Postives = 68/120 (56.67%), Query Frame = -2 Query: 440 LKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQ-------KADNDSCPIHSIP--SSLIESLRPVYKSALDKLKETVE 772 L+ FR+GK L+++D +RG+D++G+ V+NY+ PA + Y+HR GRTARAG+ GR TL + + K K + + K N + + + IE L PV + LD+ K+ E Sbjct: 547 LEDFRDGKCNYLLATDVASRGIDIKGIEVVINYEAPATHEVYLHRVGRTARAGRSGRAITLAGEGDRKVLKGVFKNSSAQNTKLVNRNLDFNKVEKFGKEIEELEPVVQKVLDEEKQERE 666
BLAST of CV712871 vs. ExPASy Swiss-Prot
Match: DRS1_GIBZE (ATP-dependent RNA helicase DRS1 OS=Gibberella zeae GN=DRS1 PE=3 SV=1) HSP 1 Score: 76.2554 bits (186), Expect = 2.149e-13 Identity = 38/120 (31.67%), Postives = 69/120 (57.50%), Query Frame = -2 Query: 422 TLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQ--KADNDSCPIHSIPSSLIESLRPVYKSALDKLKETVESEAHRK 775 +++ FR+GK+ L+++D +RG+D++GV+ V+NY+ P + Y+HR GRTARAG+ G T+ + + K K ++ KA + S +++L+ D++ E +E E K Sbjct: 543 SVEDFRDGKVAYLLATDLASRGLDIKGVDTVINYEAPQSLDIYVHRVGRTARAGRKGVALTIAAESDRKVVKAAVKAGKAQGAKIVSRQLDSGEVDALQTQIDEMDDEIDEIMEEEKEEK 662
BLAST of CV712871 vs. ExPASy Swiss-Prot
Match: RRP3_YEAS7 (ATP-dependent rRNA helicase RRP3 OS=Saccharomyces cerevisiae (strain YJM789) GN=RRP3 PE=3 SV=1) HSP 1 Score: 75.8702 bits (185), Expect = 2.806e-13 Identity = 47/131 (35.88%), Postives = 78/131 (59.54%), Query Frame = -2 Query: 380 LKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSIPSSLIESLRPVYKSALDKLKETVESEAHRKHTIGFKLSRMGKGR 772 L F+ GK +LV++D RG+D+ V+ VVNYD P K+YIHR GRTARAG+ G+ +L+ + +++ + +++ P S+ ++I +LR ++DK V E +R++ K++R GKGR Sbjct: 364 LDLFKAGKRSILVATDVAARGLDIPSVDIVVNYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLELILR-IEEVLGKKLPKESVDKNIILTLR----DSVDKANGEVVMEMNRRNK--EKIAR-GKGR 486
BLAST of CV712871 vs. ExPASy Swiss-Prot
Match: ROK1_CANAL (ATP-dependent RNA helicase CHR1 OS=Candida albicans GN=CHR1 PE=3 SV=1) HSP 1 Score: 75.8702 bits (185), Expect = 2.806e-13 Identity = 33/82 (40.24%), Postives = 49/82 (59.76%), Query Frame = -2 Query: 527 LKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSC 772 +K F+ G I VL+++D + RG+D +GVN V+NYD P + Y+HR GRT R G+ G+ T K++ K K +L C Sbjct: 421 IKRFKNGDIWVLITTDVLARGVDFKGVNLVINYDVPQSAQAYVHRIGRTGRGGKAGKAVTFFTKEDDKAIKPILNVMKQSGC 502
BLAST of CV712871 vs. ExPASy Swiss-Prot
Match: ROK1_PICST (ATP-dependent RNA helicase ROK1 OS=Pichia stipitis GN=ROK1 PE=3 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 3.665e-13 Identity = 37/107 (34.58%), Postives = 60/107 (56.07%), Query Frame = -2 Query: 452 LKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSIPSSLIESLRPVYKSALDKLK 772 +K F+ G I VL+++D + RG+D +GVN V+NYD P + Y+HR GRT R G+ GR T K++ + K ++ C S +E++ + K+ K+K Sbjct: 411 IKRFKNGDIWVLITTDVLARGVDFKGVNMVINYDVPQTAQAYVHRIGRTGRGGKAGRAVTFFTKEDDQAVKPIINVMKQSGCEAGF--SGWMENMTKMSKNEKKKVK 515
BLAST of CV712871 vs. ExPASy Swiss-Prot
Match: DHH1_KLULA (ATP-dependent RNA helicase DHH1 OS=Kluyveromyces lactis GN=DHH1 PE=3 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 3.665e-13 Identity = 37/92 (40.22%), Postives = 59/92 (64.13%), Query Frame = -2 Query: 488 FREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSIPSSLIESL 763 FR+GK++ LV SD +TRG+D++ VN V+N+D P +TY+HR GR+ R G LG L++ ++ K+ Q+ + + P IPS + +SL Sbjct: 319 FRQGKVRTLVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLINWNDRFNLYKIEQELNTEIAP---IPSQIDKSL 407
BLAST of CV712871 vs. ExPASy Swiss-Prot
Match: RRP3_CANGA (ATP-dependent rRNA helicase RRP3 OS=Candida glabrata GN=RRP3 PE=3 SV=1) HSP 1 Score: 74.7146 bits (182), Expect = 6.252e-13 Identity = 44/131 (33.59%), Postives = 75/131 (57.25%), Query Frame = -2 Query: 380 LKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSIPSSLIESLRPVYKSALDKLKETVESEAHRKHTIGFKLSRMGKGR 772 L F+ GK +LV++D RG+D+ V+ V+NYD P K+YIHR GRTARAG+ G+ +L+ + +++ + +++ P S+ ++I +LR ++DK V E +R++ + GKGR Sbjct: 356 LDLFKAGKRSILVATDVAARGLDIPSVDIVINYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLELILR-IEEVLGKKLPKESVDKNIILTLR----DSVDKANGEVVMEMNRRNK---EKQARGKGR 478
BLAST of CV712871 vs. ExPASy Swiss-Prot
Match: RRP3_ASHGO (ATP-dependent rRNA helicase RRP3 OS=Ashbya gossypii GN=RRP3 PE=3 SV=1) HSP 1 Score: 74.7146 bits (182), Expect = 6.252e-13 Identity = 44/131 (33.59%), Postives = 75/131 (57.25%), Query Frame = -2 Query: 380 LKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSIPSSLIESLRPVYKSALDKLKETVESEAHRKHTIGFKLSRMGKGR 772 L F+ GK +LV++D RG+D+ V+ V+NYD P K+YIHR GRTARAG+ G+ +L+ + +++ + +++ P ++ S++ SLR ++DK V E +R++ + GKGR Sbjct: 350 LDLFKAGKKSILVATDVAARGLDIPSVDLVINYDIPVDSKSYIHRVGRTARAGRSGKSVSLVSQYDLELILR-IEEVLGKKLPKENVDKSIVLSLR----DSVDKANGEVIMELNRRNK---EKQTRGKGR 472
BLAST of CV712871 vs. ExPASy Swiss-Prot
Match: ROK1_LODEL (ATP-dependent RNA helicase ROK1 OS=Lodderomyces elongisporus GN=ROK1 PE=3 SV=1) HSP 1 Score: 74.7146 bits (182), Expect = 6.252e-13 Identity = 32/82 (39.02%), Postives = 49/82 (59.76%), Query Frame = -2 Query: 527 LKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSC 772 +K F+ G I VL+++D + RG+D +GVN V+NYD P + Y+HR GRT R G+ G+ T K++ K K ++ C Sbjct: 409 IKRFKNGDIWVLITTDVLARGVDFKGVNMVINYDVPQSAQAYVHRIGRTGRGGRSGKAVTFFTKEDDKAVKPIINVMKQSGC 490
BLAST of CV712871 vs. ExPASy Swiss-Prot
Match: DEAD_SHIFL (Cold-shock DEAD box protein A OS=Shigella flexneri GN=deaD PE=3 SV=2) HSP 1 Score: 74.7146 bits (182), Expect = 6.252e-13 Identity = 43/152 (28.29%), Postives = 78/152 (51.32%), Query Frame = -2 Query: 374 TLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSIPSSLIESLRPV------------------YKSALDKLKETVESEAHRKHTIGFKLSRMGKGRVT 775 TL+ ++G++ +L+++D RG+DVE ++ VVNYD P ++Y+HR GRT RAG+ GR + E +R + +++ + P +P++ + R + Y++ L K++ T E E T+ L +M +G T Sbjct: 287 TLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRE-RRLLRNIERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELDLETLAAALLKMAQGERT 437 The following BLAST results are available for this feature:
BLAST of CV712871 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 168
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Sequences
The
following sequences are available for this feature:
EST sequence >CV712871 ID=CV712871; Name=CV712871; organism=Citrus sinensis; type=EST; length=776bpback to top |