CV712871

Overview
NameCV712871
Unique NameCV712871
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length776
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV712871 vs. ExPASy Swiss-Prot
Match: DRS1_SCHPO (ATP-dependent RNA helicase drs1 OS=Schizosaccharomyces pombe GN=drs1 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.149e-13
Identity = 43/120 (35.83%), Postives = 68/120 (56.67%), Query Frame = -2
Query:  440 LKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQ-------KADNDSCPIHSIP--SSLIESLRPVYKSALDKLKETVE 772
            L+ FR+GK   L+++D  +RG+D++G+  V+NY+ PA  + Y+HR GRTARAG+ GR  TL  + + K  K + +       K  N +   + +      IE L PV +  LD+ K+  E
Sbjct:  547 LEDFRDGKCNYLLATDVASRGIDIKGIEVVINYEAPATHEVYLHRVGRTARAGRSGRAITLAGEGDRKVLKGVFKNSSAQNTKLVNRNLDFNKVEKFGKEIEELEPVVQKVLDEEKQERE 666          
BLAST of CV712871 vs. ExPASy Swiss-Prot
Match: DRS1_GIBZE (ATP-dependent RNA helicase DRS1 OS=Gibberella zeae GN=DRS1 PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.149e-13
Identity = 38/120 (31.67%), Postives = 69/120 (57.50%), Query Frame = -2
Query:  422 TLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQ--KADNDSCPIHSIPSSLIESLRPVYKSALDKLKETVESEAHRK 775
            +++ FR+GK+  L+++D  +RG+D++GV+ V+NY+ P  +  Y+HR GRTARAG+ G   T+  + + K  K  ++  KA         + S  +++L+       D++ E +E E   K
Sbjct:  543 SVEDFRDGKVAYLLATDLASRGLDIKGVDTVINYEAPQSLDIYVHRVGRTARAGRKGVALTIAAESDRKVVKAAVKAGKAQGAKIVSRQLDSGEVDALQTQIDEMDDEIDEIMEEEKEEK 662          
BLAST of CV712871 vs. ExPASy Swiss-Prot
Match: RRP3_YEAS7 (ATP-dependent rRNA helicase RRP3 OS=Saccharomyces cerevisiae (strain YJM789) GN=RRP3 PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.806e-13
Identity = 47/131 (35.88%), Postives = 78/131 (59.54%), Query Frame = -2
Query:  380 LKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSIPSSLIESLRPVYKSALDKLKETVESEAHRKHTIGFKLSRMGKGR 772
            L  F+ GK  +LV++D   RG+D+  V+ VVNYD P   K+YIHR GRTARAG+ G+  +L+ + +++   + +++      P  S+  ++I +LR     ++DK    V  E +R++    K++R GKGR
Sbjct:  364 LDLFKAGKRSILVATDVAARGLDIPSVDIVVNYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLELILR-IEEVLGKKLPKESVDKNIILTLR----DSVDKANGEVVMEMNRRNK--EKIAR-GKGR 486          
BLAST of CV712871 vs. ExPASy Swiss-Prot
Match: ROK1_CANAL (ATP-dependent RNA helicase CHR1 OS=Candida albicans GN=CHR1 PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.806e-13
Identity = 33/82 (40.24%), Postives = 49/82 (59.76%), Query Frame = -2
Query:  527 LKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSC 772
            +K F+ G I VL+++D + RG+D +GVN V+NYD P   + Y+HR GRT R G+ G+  T   K++ K  K +L       C
Sbjct:  421 IKRFKNGDIWVLITTDVLARGVDFKGVNLVINYDVPQSAQAYVHRIGRTGRGGKAGKAVTFFTKEDDKAIKPILNVMKQSGC 502          
BLAST of CV712871 vs. ExPASy Swiss-Prot
Match: ROK1_PICST (ATP-dependent RNA helicase ROK1 OS=Pichia stipitis GN=ROK1 PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.665e-13
Identity = 37/107 (34.58%), Postives = 60/107 (56.07%), Query Frame = -2
Query:  452 LKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSIPSSLIESLRPVYKSALDKLK 772
            +K F+ G I VL+++D + RG+D +GVN V+NYD P   + Y+HR GRT R G+ GR  T   K++ +  K ++       C      S  +E++  + K+   K+K
Sbjct:  411 IKRFKNGDIWVLITTDVLARGVDFKGVNMVINYDVPQTAQAYVHRIGRTGRGGKAGRAVTFFTKEDDQAVKPIINVMKQSGCEAGF--SGWMENMTKMSKNEKKKVK 515          
BLAST of CV712871 vs. ExPASy Swiss-Prot
Match: DHH1_KLULA (ATP-dependent RNA helicase DHH1 OS=Kluyveromyces lactis GN=DHH1 PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.665e-13
Identity = 37/92 (40.22%), Postives = 59/92 (64.13%), Query Frame = -2
Query:  488 FREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSIPSSLIESL 763
            FR+GK++ LV SD +TRG+D++ VN V+N+D P   +TY+HR GR+ R G LG    L++ ++     K+ Q+ + +  P   IPS + +SL
Sbjct:  319 FRQGKVRTLVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLINWNDRFNLYKIEQELNTEIAP---IPSQIDKSL 407          
BLAST of CV712871 vs. ExPASy Swiss-Prot
Match: RRP3_CANGA (ATP-dependent rRNA helicase RRP3 OS=Candida glabrata GN=RRP3 PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 6.252e-13
Identity = 44/131 (33.59%), Postives = 75/131 (57.25%), Query Frame = -2
Query:  380 LKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSIPSSLIESLRPVYKSALDKLKETVESEAHRKHTIGFKLSRMGKGR 772
            L  F+ GK  +LV++D   RG+D+  V+ V+NYD P   K+YIHR GRTARAG+ G+  +L+ + +++   + +++      P  S+  ++I +LR     ++DK    V  E +R++    +    GKGR
Sbjct:  356 LDLFKAGKRSILVATDVAARGLDIPSVDIVINYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLELILR-IEEVLGKKLPKESVDKNIILTLR----DSVDKANGEVVMEMNRRNK---EKQARGKGR 478          
BLAST of CV712871 vs. ExPASy Swiss-Prot
Match: RRP3_ASHGO (ATP-dependent rRNA helicase RRP3 OS=Ashbya gossypii GN=RRP3 PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 6.252e-13
Identity = 44/131 (33.59%), Postives = 75/131 (57.25%), Query Frame = -2
Query:  380 LKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSIPSSLIESLRPVYKSALDKLKETVESEAHRKHTIGFKLSRMGKGR 772
            L  F+ GK  +LV++D   RG+D+  V+ V+NYD P   K+YIHR GRTARAG+ G+  +L+ + +++   + +++      P  ++  S++ SLR     ++DK    V  E +R++    +    GKGR
Sbjct:  350 LDLFKAGKKSILVATDVAARGLDIPSVDLVINYDIPVDSKSYIHRVGRTARAGRSGKSVSLVSQYDLELILR-IEEVLGKKLPKENVDKSIVLSLR----DSVDKANGEVIMELNRRNK---EKQTRGKGR 472          
BLAST of CV712871 vs. ExPASy Swiss-Prot
Match: ROK1_LODEL (ATP-dependent RNA helicase ROK1 OS=Lodderomyces elongisporus GN=ROK1 PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 6.252e-13
Identity = 32/82 (39.02%), Postives = 49/82 (59.76%), Query Frame = -2
Query:  527 LKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSC 772
            +K F+ G I VL+++D + RG+D +GVN V+NYD P   + Y+HR GRT R G+ G+  T   K++ K  K ++       C
Sbjct:  409 IKRFKNGDIWVLITTDVLARGVDFKGVNMVINYDVPQSAQAYVHRIGRTGRGGRSGKAVTFFTKEDDKAVKPIINVMKQSGC 490          
BLAST of CV712871 vs. ExPASy Swiss-Prot
Match: DEAD_SHIFL (Cold-shock DEAD box protein A OS=Shigella flexneri GN=deaD PE=3 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 6.252e-13
Identity = 43/152 (28.29%), Postives = 78/152 (51.32%), Query Frame = -2
Query:  374 TLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSIPSSLIESLRPV------------------YKSALDKLKETVESEAHRKHTIGFKLSRMGKGRVT 775
            TL+  ++G++ +L+++D   RG+DVE ++ VVNYD P   ++Y+HR GRT RAG+ GR    +   E +R  + +++    + P   +P++ +   R +                  Y++ L K++ T E E     T+   L +M +G  T
Sbjct:  287 TLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRE-RRLLRNIERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELDLETLAAALLKMAQGERT 437          
The following BLAST results are available for this feature:
BLAST of CV712871 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 168
Match NameE-valueIdentityDescription
DRS1_SCHPO2.149e-1335.83ATP-dependent RNA helicase drs1 OS=Schizosaccharom... [more]
DRS1_GIBZE2.149e-1331.67ATP-dependent RNA helicase DRS1 OS=Gibberella zeae... [more]
RRP3_YEAS72.806e-1335.88ATP-dependent rRNA helicase RRP3 OS=Saccharomyces ... [more]
ROK1_CANAL2.806e-1340.24ATP-dependent RNA helicase CHR1 OS=Candida albican... [more]
ROK1_PICST3.665e-1334.58ATP-dependent RNA helicase ROK1 OS=Pichia stipitis... [more]
DHH1_KLULA3.665e-1340.22ATP-dependent RNA helicase DHH1 OS=Kluyveromyces l... [more]
RRP3_CANGA6.252e-1333.59ATP-dependent rRNA helicase RRP3 OS=Candida glabra... [more]
RRP3_ASHGO6.252e-1333.59ATP-dependent rRNA helicase RRP3 OS=Ashbya gossypi... [more]
ROK1_LODEL6.252e-1339.02ATP-dependent RNA helicase ROK1 OS=Lodderomyces el... [more]
DEAD_SHIFL6.252e-1328.29Cold-shock DEAD box protein A OS=Shigella flexneri... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0002A05_f Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0002A05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712871 ID=CV712871; Name=CV712871; organism=Citrus sinensis; type=EST; length=776bp
GAAGTTTGTAATATACACGTTTGTTACTTTACAGAGCCACAAGGTCACAA
CAAAATTATGTTCACAAGCTATCACAATGCCTCTAATCTTACATTTCCTA
CCTGTTGTACAAAAATGTAATACATTGGCAACTGTTTGCTTTTAATATTA
ACAAAACTTCAATAAGCTAAATGATGTTGTCCGGCATTTGTCTGCTGGAA
CGAGAAATAGAAGAACTGATCAGGAAAAGGTACCAAGTCCTAAGCTCTGA
CATATTGATCAACTCTTGCAATTTGCTCAACGATGAAGAGTGTTTGCACT
TGCACTCGATAGTATCGCACCCATAATTATCCTAATAGTCAGAACATTGG
ATAAATTACTGCTTTGCATGGCCTGTTACTCTGCCTTTGCCCATTCTTGA
TAGCTTGAACCCAATTGTGTGCTTTCTGTGCGCTTCTGATTCAACTGTCT
CTTTTAACTTGTCTAGAGCAGATTTATAAACTGGACGGAGTGACTCAATC
AAACTGGAAGGGATAGAGTGAATGGGACAGGAGTCATTGTCAGCTTTCTG
TAACAGCTTCTTGAAACGCTTCACCTCATCCTTATGCAACAAAGTGAAGC
AACGCCCAAGCTGGCCAGCTCTTGCAGTTCGGCCAGCACGATGAATATAT
GTCTTGATATATGCAGGCTTATCATAATTAACGACATTGTTCACCCCTTC
AACATCCATCCCGCGAGTCATTGCATCTGAGGAAACAAGCACTTGTATCT
TCCCTTCCCGAAATGCCTTCAACGTC
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