CV712871

Overview
NameCV712871
Unique NameCV712871
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length776
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV712871 vs. ExPASy Swiss-Prot
Match: DDX27_DICDI (Probable ATP-dependent RNA helicase ddx27 OS=Dictyostelium discoideum GN=ddx27 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.819e-12
Identity = 38/114 (33.33%), Postives = 63/114 (55.26%), Query Frame = -2
Query:  434 TLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSIPSSLIESLRPVYKSALDKLKETVESE 775
            +L+ FR+G++  L++SD  +RG+D+ GV  V+NY+ P  +  YIHR GRTARAG  G+  + +  ++ K  K ++ KA N      S+    +   R   +   + +K  V  E
Sbjct:  478 SLQQFRDGQVNYLLASDVASRGLDIIGVKTVINYNMPNNMANYIHRVGRTARAGMDGKSCSFITDNDRKLLKDIVTKARN-KAKSRSVSQDNVNFWRNRIEELTEDIKSIVREE 590          
BLAST of CV712871 vs. ExPASy Swiss-Prot
Match: DHH1_ASHGO (ATP-dependent RNA helicase DHH1 OS=Ashbya gossypii GN=DHH1 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.376e-12
Identity = 36/92 (39.13%), Postives = 59/92 (64.13%), Query Frame = -2
Query:  488 FREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSIPSSLIESL 763
            FR+GK++ LV SD +TRG+D++ VN V+N+D P   +TY+HR GR+ R G LG    L++ ++     K+ Q+   +   I +IP+ + +SL
Sbjct:  312 FRQGKVRTLVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLINWNDRFNLYKIEQELGTE---IAAIPAQIDKSL 400          
BLAST of CV712871 vs. ExPASy Swiss-Prot
Match: RRP3_COCIM (ATP-dependent rRNA helicase RRP3 OS=Coccidioides immitis GN=RRP3 PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.103e-12
Identity = 46/133 (34.59%), Postives = 74/133 (55.64%), Query Frame = -2
Query:  383 LKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEV---KRFKKLLQKADNDSCPIHSIPSSLIESLRPVYKSALDKLKETVESEAHRKHTIGFKLSRMGKG 772
            L  FR     +LV++D   RG+D+  V+ V+NYD P+  KTYIHR GRTARAG+ GR F+L+ + +V   +R +  L K  ++          L + +    + A+ ++KE  E+   +  T+  +  R+GKG
Sbjct:  331 LGKFRSRSRNILVATDVAARGLDIPSVDLVLNYDLPSDSKTYIHRVGRTARAGKSGRAFSLVTQYDVEIWQRIEAALGKELDEYKVEKEEVMVLSDRVGEAQRHAITEMKELHENRGKKGATL--RNRRIGKG 461          
BLAST of CV712871 vs. ExPASy Swiss-Prot
Match: DRS1_NEUCR (ATP-dependent RNA helicase drs-1 OS=Neurospora crassa GN=drs-1 PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.103e-12
Identity = 37/120 (30.83%), Postives = 68/120 (56.67%), Query Frame = -2
Query:  422 TLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHS--IPSSLIESLRPVYKSALDKLKETVESEAHRK 775
            +++ FR+GK+  L+++D  +RG+D++GV+ V+NY+ P   + Y+HR GRTARAG+ G   TL  + + K  K  ++   +    I S  I  +  +  +       D+++E ++ E   K
Sbjct:  580 SVEDFRDGKVNFLLATDLASRGLDIKGVDTVINYEAPQTPEIYVHRVGRTARAGRSGTAITLAAEPDRKVVKAAVKAGKSQGAKISSRIIDPADADKWQAEIDELEDEIEEIMQEEKEEK 699          
BLAST of CV712871 vs. ExPASy Swiss-Prot
Match: DHH1_PICGU (ATP-dependent RNA helicase DHH1 OS=Pichia guilliermondii GN=DHH1 PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.103e-12
Identity = 36/92 (39.13%), Postives = 54/92 (58.70%), Query Frame = -2
Query:  488 FREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSIPSSLIESL 763
            FR+G ++ LV SD +TRG+D++ VN V+N+D P   +TY+HR GR+ R G LG     +H D+ K    +  +   +   I  IPS +  SL
Sbjct:  312 FRQGSVRTLVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINFIHWDDRKSLFNIETELGTE---IKPIPSDIDRSL 400          
BLAST of CV712871 vs. ExPASy Swiss-Prot
Match: DDX52_HUMAN (Probable ATP-dependent RNA helicase DDX52 OS=Homo sapiens GN=DDX52 PE=1 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 3.103e-12
Identity = 34/85 (40.00%), Postives = 48/85 (56.47%), Query Frame = -2
Query:  521 TLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPI 775
            T+ +FR GKI VL+ +  + RG+D +GVN V+NYD P     YIHR GRT RAG  G+  T   +D+    + +        CP+
Sbjct:  454 TVHSFRAGKIWVLICTALLARGIDFKGVNLVINYDFPTSSVEYIHRIGRTGRAGNKGKAITFFTEDDKPLLRSVANVIQQAGCPV 538          
BLAST of CV712871 vs. ExPASy Swiss-Prot
Match: DDX52_BOVIN (Probable ATP-dependent RNA helicase DDX52 OS=Bos taurus GN=DDX52 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.103e-12
Identity = 43/139 (30.94%), Postives = 67/139 (48.20%), Query Frame = -2
Query:  359 TLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSIPSSLIESLRPVYKSALDKLKETVESEAHRKHTIGFKLSRMGKGRVTGHAKQ 775
            T+ +FR GKI VL+ +  + RG+D +GVN V+NYD P     YIHR GRT RAG  G+  T   +D+    + +        CP+        + L    K  + K  E        K+ +  + ++  + +VTG  K+
Sbjct:  452 TVHSFRAGKIWVLICTALLARGIDFKGVNLVINYDFPTSSVEYIHRIGRTGRAGHKGKAVTFFTEDDKPLLRSVANVIQQAGCPVPEYIKGFQKLLSKQKKKMIKKPLERESISTTPKYFL--EKAKDKRKKVTGQNKK 588          
BLAST of CV712871 vs. ExPASy Swiss-Prot
Match: DRS1_PHANO (ATP-dependent RNA helicase DRS1 OS=Phaeosphaeria nodorum GN=DRS1 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.052e-12
Identity = 41/117 (35.04%), Postives = 68/117 (58.12%), Query Frame = -2
Query:  440 LKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHS--IP----SSLIESLRPVYKSALDKLKETVE 772
            ++AFR GK   L+++D  +RG+D++ V+ V+NY+ P   + Y+HR GRTARAG+ GR  TL  + + K  K+ ++++ +    + S  +P       +E LR +     D LKE  E
Sbjct:  573 VEAFRSGKSSYLLATDVASRGLDIKNVSTVINYEAPQSHEIYLHRVGRTARAGRSGRACTLAAEPDRKVVKQAVKQSRDQGSKVVSRQVPVEETDRWMEKLRGLEDEIEDVLKEEKE 689          
BLAST of CV712871 vs. ExPASy Swiss-Prot
Match: DRS1_CHAGB (ATP-dependent RNA helicase DRS1 OS=Chaetomium globosum GN=DRS1 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.052e-12
Identity = 37/117 (31.62%), Postives = 66/117 (56.41%), Query Frame = -2
Query:  422 AFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHS--IPSSLIESLRPVYKSALDKLKETVESEAHRK 766
            AFR+GK+  L+++D  +RG+D++G++ V+NY+ P  ++ Y+HR GRTARAG+ G   TL  + + K  K  ++        I S  I ++  +  +       D++ E ++ E   K
Sbjct:  560 AFRDGKVNYLLATDLASRGLDIKGIDTVINYEAPQSLEIYVHRVGRTARAGRSGVAITLAAEPDRKVVKAAVRAGKAQGAKIISRVIDAADADKWQDQIDEMDDEIDEILQEEKEEK 676          
BLAST of CV712871 vs. ExPASy Swiss-Prot
Match: DHH1_ASPOR (ATP-dependent RNA helicase dhh1 OS=Aspergillus oryzae GN=dhh1 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.052e-12
Identity = 44/133 (33.08%), Postives = 70/133 (52.63%), Query Frame = -2
Query:  365 FREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSIPSSLIESLRPVYKSALDKLKETVESEAHRKHTIGFKLSRMGKGRVTGHA 763
            FR G  + LV SD +TRG+D++ VN V+N+D P   +TY+HR GR+ R G LG    L++ D+     K+ Q+   +   I  IP ++ + L  VY+S     +    +   +  T G +   MG+ R   H+
Sbjct:  330 FRNGVCRNLVCSDLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLGLAINLINWDDRFNLYKIEQELGTE---IQPIPQNIDKKLY-VYESPETIPRPIANASQAQLATSGNQTQNMGERRHNNHS 458          
The following BLAST results are available for this feature:
BLAST of CV712871 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 168
Match NameE-valueIdentityDescription
DDX27_DICDI1.819e-1233.33Probable ATP-dependent RNA helicase ddx27 OS=Dicty... [more]
DHH1_ASHGO2.376e-1239.13ATP-dependent RNA helicase DHH1 OS=Ashbya gossypii... [more]
RRP3_COCIM3.103e-1234.59ATP-dependent rRNA helicase RRP3 OS=Coccidioides i... [more]
DRS1_NEUCR3.103e-1230.83ATP-dependent RNA helicase drs-1 OS=Neurospora cra... [more]
DHH1_PICGU3.103e-1239.13ATP-dependent RNA helicase DHH1 OS=Pichia guillier... [more]
DDX52_HUMAN3.103e-1240.00Probable ATP-dependent RNA helicase DDX52 OS=Homo ... [more]
DDX52_BOVIN3.103e-1230.94Probable ATP-dependent RNA helicase DDX52 OS=Bos t... [more]
DRS1_PHANO4.052e-1235.04ATP-dependent RNA helicase DRS1 OS=Phaeosphaeria n... [more]
DRS1_CHAGB4.052e-1231.62ATP-dependent RNA helicase DRS1 OS=Chaetomium glob... [more]
DHH1_ASPOR4.052e-1233.08ATP-dependent RNA helicase dhh1 OS=Aspergillus ory... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0002A05_f Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0002A05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712871 ID=CV712871; Name=CV712871; organism=Citrus sinensis; type=EST; length=776bp
GAAGTTTGTAATATACACGTTTGTTACTTTACAGAGCCACAAGGTCACAA
CAAAATTATGTTCACAAGCTATCACAATGCCTCTAATCTTACATTTCCTA
CCTGTTGTACAAAAATGTAATACATTGGCAACTGTTTGCTTTTAATATTA
ACAAAACTTCAATAAGCTAAATGATGTTGTCCGGCATTTGTCTGCTGGAA
CGAGAAATAGAAGAACTGATCAGGAAAAGGTACCAAGTCCTAAGCTCTGA
CATATTGATCAACTCTTGCAATTTGCTCAACGATGAAGAGTGTTTGCACT
TGCACTCGATAGTATCGCACCCATAATTATCCTAATAGTCAGAACATTGG
ATAAATTACTGCTTTGCATGGCCTGTTACTCTGCCTTTGCCCATTCTTGA
TAGCTTGAACCCAATTGTGTGCTTTCTGTGCGCTTCTGATTCAACTGTCT
CTTTTAACTTGTCTAGAGCAGATTTATAAACTGGACGGAGTGACTCAATC
AAACTGGAAGGGATAGAGTGAATGGGACAGGAGTCATTGTCAGCTTTCTG
TAACAGCTTCTTGAAACGCTTCACCTCATCCTTATGCAACAAAGTGAAGC
AACGCCCAAGCTGGCCAGCTCTTGCAGTTCGGCCAGCACGATGAATATAT
GTCTTGATATATGCAGGCTTATCATAATTAACGACATTGTTCACCCCTTC
AACATCCATCCCGCGAGTCATTGCATCTGAGGAAACAAGCACTTGTATCT
TCCCTTCCCGAAATGCCTTCAACGTC
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