CV712871
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CV712871 vs. ExPASy Swiss-Prot
Match: DDX27_DICDI (Probable ATP-dependent RNA helicase ddx27 OS=Dictyostelium discoideum GN=ddx27 PE=3 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 1.819e-12 Identity = 38/114 (33.33%), Postives = 63/114 (55.26%), Query Frame = -2 Query: 434 TLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSIPSSLIESLRPVYKSALDKLKETVESE 775 +L+ FR+G++ L++SD +RG+D+ GV V+NY+ P + YIHR GRTARAG G+ + + ++ K K ++ KA N S+ + R + + +K V E Sbjct: 478 SLQQFRDGQVNYLLASDVASRGLDIIGVKTVINYNMPNNMANYIHRVGRTARAGMDGKSCSFITDNDRKLLKDIVTKARN-KAKSRSVSQDNVNFWRNRIEELTEDIKSIVREE 590
BLAST of CV712871 vs. ExPASy Swiss-Prot
Match: DHH1_ASHGO (ATP-dependent RNA helicase DHH1 OS=Ashbya gossypii GN=DHH1 PE=3 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 2.376e-12 Identity = 36/92 (39.13%), Postives = 59/92 (64.13%), Query Frame = -2 Query: 488 FREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSIPSSLIESL 763 FR+GK++ LV SD +TRG+D++ VN V+N+D P +TY+HR GR+ R G LG L++ ++ K+ Q+ + I +IP+ + +SL Sbjct: 312 FRQGKVRTLVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLINWNDRFNLYKIEQELGTE---IAAIPAQIDKSL 400
BLAST of CV712871 vs. ExPASy Swiss-Prot
Match: RRP3_COCIM (ATP-dependent rRNA helicase RRP3 OS=Coccidioides immitis GN=RRP3 PE=3 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 3.103e-12 Identity = 46/133 (34.59%), Postives = 74/133 (55.64%), Query Frame = -2 Query: 383 LKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEV---KRFKKLLQKADNDSCPIHSIPSSLIESLRPVYKSALDKLKETVESEAHRKHTIGFKLSRMGKG 772 L FR +LV++D RG+D+ V+ V+NYD P+ KTYIHR GRTARAG+ GR F+L+ + +V +R + L K ++ L + + + A+ ++KE E+ + T+ + R+GKG Sbjct: 331 LGKFRSRSRNILVATDVAARGLDIPSVDLVLNYDLPSDSKTYIHRVGRTARAGKSGRAFSLVTQYDVEIWQRIEAALGKELDEYKVEKEEVMVLSDRVGEAQRHAITEMKELHENRGKKGATL--RNRRIGKG 461
BLAST of CV712871 vs. ExPASy Swiss-Prot
Match: DRS1_NEUCR (ATP-dependent RNA helicase drs-1 OS=Neurospora crassa GN=drs-1 PE=3 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 3.103e-12 Identity = 37/120 (30.83%), Postives = 68/120 (56.67%), Query Frame = -2 Query: 422 TLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHS--IPSSLIESLRPVYKSALDKLKETVESEAHRK 775 +++ FR+GK+ L+++D +RG+D++GV+ V+NY+ P + Y+HR GRTARAG+ G TL + + K K ++ + I S I + + + D+++E ++ E K Sbjct: 580 SVEDFRDGKVNFLLATDLASRGLDIKGVDTVINYEAPQTPEIYVHRVGRTARAGRSGTAITLAAEPDRKVVKAAVKAGKSQGAKISSRIIDPADADKWQAEIDELEDEIEEIMQEEKEEK 699
BLAST of CV712871 vs. ExPASy Swiss-Prot
Match: DHH1_PICGU (ATP-dependent RNA helicase DHH1 OS=Pichia guilliermondii GN=DHH1 PE=3 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 3.103e-12 Identity = 36/92 (39.13%), Postives = 54/92 (58.70%), Query Frame = -2 Query: 488 FREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSIPSSLIESL 763 FR+G ++ LV SD +TRG+D++ VN V+N+D P +TY+HR GR+ R G LG +H D+ K + + + I IPS + SL Sbjct: 312 FRQGSVRTLVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINFIHWDDRKSLFNIETELGTE---IKPIPSDIDRSL 400
BLAST of CV712871 vs. ExPASy Swiss-Prot
Match: DDX52_HUMAN (Probable ATP-dependent RNA helicase DDX52 OS=Homo sapiens GN=DDX52 PE=1 SV=2) HSP 1 Score: 72.4034 bits (176), Expect = 3.103e-12 Identity = 34/85 (40.00%), Postives = 48/85 (56.47%), Query Frame = -2 Query: 521 TLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPI 775 T+ +FR GKI VL+ + + RG+D +GVN V+NYD P YIHR GRT RAG G+ T +D+ + + CP+ Sbjct: 454 TVHSFRAGKIWVLICTALLARGIDFKGVNLVINYDFPTSSVEYIHRIGRTGRAGNKGKAITFFTEDDKPLLRSVANVIQQAGCPV 538
BLAST of CV712871 vs. ExPASy Swiss-Prot
Match: DDX52_BOVIN (Probable ATP-dependent RNA helicase DDX52 OS=Bos taurus GN=DDX52 PE=2 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 3.103e-12 Identity = 43/139 (30.94%), Postives = 67/139 (48.20%), Query Frame = -2 Query: 359 TLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSIPSSLIESLRPVYKSALDKLKETVESEAHRKHTIGFKLSRMGKGRVTGHAKQ 775 T+ +FR GKI VL+ + + RG+D +GVN V+NYD P YIHR GRT RAG G+ T +D+ + + CP+ + L K + K E K+ + + ++ + +VTG K+ Sbjct: 452 TVHSFRAGKIWVLICTALLARGIDFKGVNLVINYDFPTSSVEYIHRIGRTGRAGHKGKAVTFFTEDDKPLLRSVANVIQQAGCPVPEYIKGFQKLLSKQKKKMIKKPLERESISTTPKYFL--EKAKDKRKKVTGQNKK 588
BLAST of CV712871 vs. ExPASy Swiss-Prot
Match: DRS1_PHANO (ATP-dependent RNA helicase DRS1 OS=Phaeosphaeria nodorum GN=DRS1 PE=3 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 4.052e-12 Identity = 41/117 (35.04%), Postives = 68/117 (58.12%), Query Frame = -2 Query: 440 LKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHS--IP----SSLIESLRPVYKSALDKLKETVE 772 ++AFR GK L+++D +RG+D++ V+ V+NY+ P + Y+HR GRTARAG+ GR TL + + K K+ ++++ + + S +P +E LR + D LKE E Sbjct: 573 VEAFRSGKSSYLLATDVASRGLDIKNVSTVINYEAPQSHEIYLHRVGRTARAGRSGRACTLAAEPDRKVVKQAVKQSRDQGSKVVSRQVPVEETDRWMEKLRGLEDEIEDVLKEEKE 689
BLAST of CV712871 vs. ExPASy Swiss-Prot
Match: DRS1_CHAGB (ATP-dependent RNA helicase DRS1 OS=Chaetomium globosum GN=DRS1 PE=3 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 4.052e-12 Identity = 37/117 (31.62%), Postives = 66/117 (56.41%), Query Frame = -2 Query: 422 AFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHS--IPSSLIESLRPVYKSALDKLKETVESEAHRK 766 AFR+GK+ L+++D +RG+D++G++ V+NY+ P ++ Y+HR GRTARAG+ G TL + + K K ++ I S I ++ + + D++ E ++ E K Sbjct: 560 AFRDGKVNYLLATDLASRGLDIKGIDTVINYEAPQSLEIYVHRVGRTARAGRSGVAITLAAEPDRKVVKAAVRAGKAQGAKIISRVIDAADADKWQDQIDEMDDEIDEILQEEKEEK 676
BLAST of CV712871 vs. ExPASy Swiss-Prot
Match: DHH1_ASPOR (ATP-dependent RNA helicase dhh1 OS=Aspergillus oryzae GN=dhh1 PE=3 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 4.052e-12 Identity = 44/133 (33.08%), Postives = 70/133 (52.63%), Query Frame = -2 Query: 365 FREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSIPSSLIESLRPVYKSALDKLKETVESEAHRKHTIGFKLSRMGKGRVTGHA 763 FR G + LV SD +TRG+D++ VN V+N+D P +TY+HR GR+ R G LG L++ D+ K+ Q+ + I IP ++ + L VY+S + + + T G + MG+ R H+ Sbjct: 330 FRNGVCRNLVCSDLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLGLAINLINWDDRFNLYKIEQELGTE---IQPIPQNIDKKLY-VYESPETIPRPIANASQAQLATSGNQTQNMGERRHNNHS 458 The following BLAST results are available for this feature:
BLAST of CV712871 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 168
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Sequences
The
following sequences are available for this feature:
EST sequence >CV712871 ID=CV712871; Name=CV712871; organism=Citrus sinensis; type=EST; length=776bpback to top |