CV712871
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CV712871 vs. ExPASy Swiss-Prot
Match: DEAD_BUCAP (Cold-shock DEAD box protein A homolog OS=Buchnera aphidicola subsp. Schizaphis graminum GN=deaD PE=3 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 9.027e-12 Identity = 36/113 (31.86%), Postives = 67/113 (59.29%), Query Frame = -2 Query: 437 TLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSIPSSLIESLRPVYKSALDKLKETVES 775 TL+ + G++ +L+++D RG+DV+ ++ V+NYD P ++Y+HR GRT RAG+ GR + E +R + +++ N + P +P + R + + A K++E +ES Sbjct: 286 TLERLKSGRLDILIATDVAARGLDVDRISFVINYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRE-RRLLRNIERTINQTIPEVQLPKIEVLCKRRLERFA-KKVQEQLES 396
BLAST of CV712871 vs. ExPASy Swiss-Prot
Match: DDX42_DICDI (Probable ATP-dependent RNA helicase ddx42 OS=Dictyostelium discoideum GN=ddx42 PE=3 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 9.027e-12 Identity = 34/94 (36.17%), Postives = 57/94 (60.64%), Query Frame = -2 Query: 494 TLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSIPSSLIE 775 T++ F+EGKI +L+++D RG+D+ + NVVNYD I+++ HR GRT RAG G +TL+ ++ L++ ++ S +P LI+ Sbjct: 592 TIQTFKEGKINILIATDVAARGLDIPLIKNVVNYDTSRDIESHTHRIGRTGRAGNTGVAYTLITPKDIHFSVDLIKNLESAS---QFVPPELID 682
BLAST of CV712871 vs. ExPASy Swiss-Prot
Match: RRP3_DEBHA (ATP-dependent rRNA helicase RRP3 OS=Debaryomyces hansenii GN=RRP3 PE=3 SV=2) HSP 1 Score: 70.4774 bits (171), Expect = 1.179e-11 Identity = 38/123 (30.89%), Postives = 68/123 (55.28%), Query Frame = -2 Query: 419 TLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKK----LLQKADNDSCPIHSIPSSLIESLRPVYKSALDKLKETVESEAHRKH 775 +L F+ GK +L+++D RG+D+ V+ V+NYD P K YIHR GRTARAG+ G+ +L+ + +++ + + L +K D P ++ +L + A+ + K+ E +K+ Sbjct: 346 SLNKFKAGKANILIATDVAARGLDIPSVDIVINYDIPTDSKAYIHRVGRTARAGKSGKSISLITQYDLEMYLRIESVLGKKLPKDPSPSKAVLDTLHVHVDRASAEAIRQTKDFHEKRNPKKN 468
BLAST of CV712871 vs. ExPASy Swiss-Prot
Match: ROK1_SCHPO (ATP-dependent RNA helicase rok1 OS=Schizosaccharomyces pombe GN=rok1 PE=2 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 1.179e-11 Identity = 38/121 (31.40%), Postives = 64/121 (52.89%), Query Frame = -2 Query: 422 LKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCP----IHSIPSSLIESLRPVYKSALDKLKETVESEAHRK 772 L FR+G+I VL+++D + RG+D GV V+N+D P + +YIHR GRT RAG G+ T K++ + K + + C + ++P E + + KS + + T + R+ Sbjct: 331 LAKFRKGEIWVLIATDLLARGIDFHGVKMVINFDFPQSVHSYIHRIGRTGRAGNTGQAVTFFTKEDGEYIKLIAGVMRSSGCEVPNWVMALPKPSKEMKKKLKKSPPKRKRITTRASYDRQ 451
BLAST of CV712871 vs. ExPASy Swiss-Prot
Match: ROK1_CRYNE (ATP-dependent RNA helicase ROK1 OS=Cryptococcus neoformans GN=ROK1 PE=3 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 1.179e-11 Identity = 33/97 (34.02%), Postives = 55/97 (56.70%), Query Frame = -2 Query: 482 LKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSIPSSLIESLRP 772 +K FR G + +LV ++ + RGMD GV V+NYD P + +YIHR GRT RAG+ G+ T + ++ + + + CP +P +++ +P Sbjct: 465 IKDFRVGAVWMLVVTEVLARGMDFRGVKVVINYDFPQTVPSYIHRIGRTGRAGRPGKAITFFNIEDGPYLRTIANVLRSSGCP---VPEYMLDMKKP 558
BLAST of CV712871 vs. ExPASy Swiss-Prot
Match: DRS1_ASPOR (ATP-dependent RNA helicase drs1 OS=Aspergillus oryzae GN=drs1 PE=3 SV=2) HSP 1 Score: 70.4774 bits (171), Expect = 1.179e-11 Identity = 32/87 (36.78%), Postives = 54/87 (62.07%), Query Frame = -2 Query: 515 TLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHS 775 +++ FREGK+ L+++D RG+D++GV V+NY+ P + Y+HR GRTARAG+ GR T+ + + K K ++ + + S Sbjct: 589 SVENFREGKVSFLLATDLAARGLDIKGVETVINYEAPQSHEIYLHRVGRTARAGRSGRACTIAAEPDRKVVKAAVKASKAQGAKVAS 675
BLAST of CV712871 vs. ExPASy Swiss-Prot
Match: ROK1_NEUCR (ATP-dependent RNA helicase rok-1 OS=Neurospora crassa GN=rok-1 PE=3 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 1.540e-11 Identity = 43/119 (36.13%), Postives = 61/119 (51.26%), Query Frame = -2 Query: 452 FREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGR-CFTLLHKDEV--------------KRFKKLLQKADNDSCPIHSIPSSLIESLRPVYKSALDKLK 763 FR G++ VL+++D + RG+D GVN VVNYD P Y+HRAGRT RAG+ G T KD++ K+ K + + D S+ L+++L V K KLK Sbjct: 598 FRSGEVWVLITTDVLARGVDFAGVNGVVNYDVPVSAAAYVHRAGRTGRAGREGGVAVTFYTKDDIPFVKSVANVIAMSEKQAGKDIDEKDTVKAAQGSVQKWLLDALPKVAKEDKRKLK 716
BLAST of CV712871 vs. ExPASy Swiss-Prot
Match: DDX52_DICDI (Probable ATP-dependent RNA helicase ddx52 OS=Dictyostelium discoideum GN=ddx52 PE=3 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 1.540e-11 Identity = 33/61 (54.10%), Postives = 44/61 (72.13%), Query Frame = -2 Query: 590 LKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTL 772 +K FR GKI VL+ ++ M RGMD +GVN V+N+D P + +YIHR GRT RAG+ G +TL Sbjct: 483 VKKFRMGKIWVLICTELMARGMDFKGVNFVINFDFPHTLASYIHRIGRTGRAGRPGVAYTL 543
BLAST of CV712871 vs. ExPASy Swiss-Prot
Match: RRP3_BOTFB (ATP-dependent rRNA helicase rrp3 OS=Botryotinia fuckeliana (strain B05.10) GN=rrp3 PE=3 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 2.011e-11 Identity = 39/131 (29.77%), Postives = 68/131 (51.91%), Query Frame = -2 Query: 380 LKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSIPSSLIESLRPVYKSALDKLKETVESEAHRKHTIGFKLSRMGKGR 772 L FR G ++LV++D RG+D+ V+ V+NYD P KTYIHR GRTARAG+ G +++ + +++ F ++ ++ ++ V+K +++ + +E H K + KGR Sbjct: 343 LNKFRAGSREILVATDVAARGLDIPSVDVVLNYDVPQDSKTYIHRVGRTARAGKSGHAISVVTQYDLEIFMRIEAALGKKQVEYPTVKDEVM-----VFKPRVEEAQRHARNEMKNLHEDRGKKGAVLKGR 468
BLAST of CV712871 vs. ExPASy Swiss-Prot
Match: ROK1_GIBZE (ATP-dependent RNA helicase ROK1 OS=Gibberella zeae GN=ROK1 PE=3 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 2.011e-11 Identity = 41/115 (35.65%), Postives = 61/115 (53.04%), Query Frame = -2 Query: 449 LKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLL-------QKADNDSCPIHSIPSSLIESLRPVYKSALDKLKE 772 ++ FR G I +L+++D + RG+D GVN VVNYD P Y+HRAGRT RAG+ G + E F K++ +K + + L+++L V K+ KLKE Sbjct: 522 MRKFRAGDIWILITTDVLARGVDFAGVNGVVNYDVPGSSAGYVHRAGRTGRAGREGGIAVTFYTKEDIPFVKMVANVIAVSEKQAGKTGDEAGVQKWLLDALPNVRKADRKKLKE 636 The following BLAST results are available for this feature:
BLAST of CV712871 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 168
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Sequences
The
following sequences are available for this feature:
EST sequence >CV712871 ID=CV712871; Name=CV712871; organism=Citrus sinensis; type=EST; length=776bpback to top |