CV712871

Overview
NameCV712871
Unique NameCV712871
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length776
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV712871 vs. ExPASy Swiss-Prot
Match: DEAD_BUCAP (Cold-shock DEAD box protein A homolog OS=Buchnera aphidicola subsp. Schizaphis graminum GN=deaD PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 9.027e-12
Identity = 36/113 (31.86%), Postives = 67/113 (59.29%), Query Frame = -2
Query:  437 TLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSIPSSLIESLRPVYKSALDKLKETVES 775
            TL+  + G++ +L+++D   RG+DV+ ++ V+NYD P   ++Y+HR GRT RAG+ GR    +   E +R  + +++  N + P   +P   +   R + + A  K++E +ES
Sbjct:  286 TLERLKSGRLDILIATDVAARGLDVDRISFVINYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRE-RRLLRNIERTINQTIPEVQLPKIEVLCKRRLERFA-KKVQEQLES 396          
BLAST of CV712871 vs. ExPASy Swiss-Prot
Match: DDX42_DICDI (Probable ATP-dependent RNA helicase ddx42 OS=Dictyostelium discoideum GN=ddx42 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 9.027e-12
Identity = 34/94 (36.17%), Postives = 57/94 (60.64%), Query Frame = -2
Query:  494 TLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSIPSSLIE 775
            T++ F+EGKI +L+++D   RG+D+  + NVVNYD    I+++ HR GRT RAG  G  +TL+   ++     L++  ++ S     +P  LI+
Sbjct:  592 TIQTFKEGKINILIATDVAARGLDIPLIKNVVNYDTSRDIESHTHRIGRTGRAGNTGVAYTLITPKDIHFSVDLIKNLESAS---QFVPPELID 682          
BLAST of CV712871 vs. ExPASy Swiss-Prot
Match: RRP3_DEBHA (ATP-dependent rRNA helicase RRP3 OS=Debaryomyces hansenii GN=RRP3 PE=3 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 1.179e-11
Identity = 38/123 (30.89%), Postives = 68/123 (55.28%), Query Frame = -2
Query:  419 TLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKK----LLQKADNDSCPIHSIPSSLIESLRPVYKSALDKLKETVESEAHRKH 775
            +L  F+ GK  +L+++D   RG+D+  V+ V+NYD P   K YIHR GRTARAG+ G+  +L+ + +++ + +    L +K   D  P  ++  +L   +      A+ + K+  E    +K+
Sbjct:  346 SLNKFKAGKANILIATDVAARGLDIPSVDIVINYDIPTDSKAYIHRVGRTARAGKSGKSISLITQYDLEMYLRIESVLGKKLPKDPSPSKAVLDTLHVHVDRASAEAIRQTKDFHEKRNPKKN 468          
BLAST of CV712871 vs. ExPASy Swiss-Prot
Match: ROK1_SCHPO (ATP-dependent RNA helicase rok1 OS=Schizosaccharomyces pombe GN=rok1 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.179e-11
Identity = 38/121 (31.40%), Postives = 64/121 (52.89%), Query Frame = -2
Query:  422 LKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCP----IHSIPSSLIESLRPVYKSALDKLKETVESEAHRK 772
            L  FR+G+I VL+++D + RG+D  GV  V+N+D P  + +YIHR GRT RAG  G+  T   K++ +  K +     +  C     + ++P    E  + + KS   + + T  +   R+
Sbjct:  331 LAKFRKGEIWVLIATDLLARGIDFHGVKMVINFDFPQSVHSYIHRIGRTGRAGNTGQAVTFFTKEDGEYIKLIAGVMRSSGCEVPNWVMALPKPSKEMKKKLKKSPPKRKRITTRASYDRQ 451          
BLAST of CV712871 vs. ExPASy Swiss-Prot
Match: ROK1_CRYNE (ATP-dependent RNA helicase ROK1 OS=Cryptococcus neoformans GN=ROK1 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.179e-11
Identity = 33/97 (34.02%), Postives = 55/97 (56.70%), Query Frame = -2
Query:  482 LKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSIPSSLIESLRP 772
            +K FR G + +LV ++ + RGMD  GV  V+NYD P  + +YIHR GRT RAG+ G+  T  + ++    + +     +  CP   +P  +++  +P
Sbjct:  465 IKDFRVGAVWMLVVTEVLARGMDFRGVKVVINYDFPQTVPSYIHRIGRTGRAGRPGKAITFFNIEDGPYLRTIANVLRSSGCP---VPEYMLDMKKP 558          
BLAST of CV712871 vs. ExPASy Swiss-Prot
Match: DRS1_ASPOR (ATP-dependent RNA helicase drs1 OS=Aspergillus oryzae GN=drs1 PE=3 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 1.179e-11
Identity = 32/87 (36.78%), Postives = 54/87 (62.07%), Query Frame = -2
Query:  515 TLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHS 775
            +++ FREGK+  L+++D   RG+D++GV  V+NY+ P   + Y+HR GRTARAG+ GR  T+  + + K  K  ++ +      + S
Sbjct:  589 SVENFREGKVSFLLATDLAARGLDIKGVETVINYEAPQSHEIYLHRVGRTARAGRSGRACTIAAEPDRKVVKAAVKASKAQGAKVAS 675          
BLAST of CV712871 vs. ExPASy Swiss-Prot
Match: ROK1_NEUCR (ATP-dependent RNA helicase rok-1 OS=Neurospora crassa GN=rok-1 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.540e-11
Identity = 43/119 (36.13%), Postives = 61/119 (51.26%), Query Frame = -2
Query:  452 FREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGR-CFTLLHKDEV--------------KRFKKLLQKADNDSCPIHSIPSSLIESLRPVYKSALDKLK 763
            FR G++ VL+++D + RG+D  GVN VVNYD P     Y+HRAGRT RAG+ G    T   KD++              K+  K + + D       S+   L+++L  V K    KLK
Sbjct:  598 FRSGEVWVLITTDVLARGVDFAGVNGVVNYDVPVSAAAYVHRAGRTGRAGREGGVAVTFYTKDDIPFVKSVANVIAMSEKQAGKDIDEKDTVKAAQGSVQKWLLDALPKVAKEDKRKLK 716          
BLAST of CV712871 vs. ExPASy Swiss-Prot
Match: DDX52_DICDI (Probable ATP-dependent RNA helicase ddx52 OS=Dictyostelium discoideum GN=ddx52 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.540e-11
Identity = 33/61 (54.10%), Postives = 44/61 (72.13%), Query Frame = -2
Query:  590 LKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTL 772
            +K FR GKI VL+ ++ M RGMD +GVN V+N+D P  + +YIHR GRT RAG+ G  +TL
Sbjct:  483 VKKFRMGKIWVLICTELMARGMDFKGVNFVINFDFPHTLASYIHRIGRTGRAGRPGVAYTL 543          
BLAST of CV712871 vs. ExPASy Swiss-Prot
Match: RRP3_BOTFB (ATP-dependent rRNA helicase rrp3 OS=Botryotinia fuckeliana (strain B05.10) GN=rrp3 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.011e-11
Identity = 39/131 (29.77%), Postives = 68/131 (51.91%), Query Frame = -2
Query:  380 LKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSIPSSLIESLRPVYKSALDKLKETVESEAHRKHTIGFKLSRMGKGR 772
            L  FR G  ++LV++D   RG+D+  V+ V+NYD P   KTYIHR GRTARAG+ G   +++ + +++ F ++            ++   ++     V+K  +++ +    +E    H    K   + KGR
Sbjct:  343 LNKFRAGSREILVATDVAARGLDIPSVDVVLNYDVPQDSKTYIHRVGRTARAGKSGHAISVVTQYDLEIFMRIEAALGKKQVEYPTVKDEVM-----VFKPRVEEAQRHARNEMKNLHEDRGKKGAVLKGR 468          
BLAST of CV712871 vs. ExPASy Swiss-Prot
Match: ROK1_GIBZE (ATP-dependent RNA helicase ROK1 OS=Gibberella zeae GN=ROK1 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.011e-11
Identity = 41/115 (35.65%), Postives = 61/115 (53.04%), Query Frame = -2
Query:  449 LKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLL-------QKADNDSCPIHSIPSSLIESLRPVYKSALDKLKE 772
            ++ FR G I +L+++D + RG+D  GVN VVNYD P     Y+HRAGRT RAG+ G      +  E   F K++       +K    +     +   L+++L  V K+   KLKE
Sbjct:  522 MRKFRAGDIWILITTDVLARGVDFAGVNGVVNYDVPGSSAGYVHRAGRTGRAGREGGIAVTFYTKEDIPFVKMVANVIAVSEKQAGKTGDEAGVQKWLLDALPNVRKADRKKLKE 636          
The following BLAST results are available for this feature:
BLAST of CV712871 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 168
Match NameE-valueIdentityDescription
DEAD_BUCAP9.027e-1231.86Cold-shock DEAD box protein A homolog OS=Buchnera ... [more]
DDX42_DICDI9.027e-1236.17Probable ATP-dependent RNA helicase ddx42 OS=Dicty... [more]
RRP3_DEBHA1.179e-1130.89ATP-dependent rRNA helicase RRP3 OS=Debaryomyces h... [more]
ROK1_SCHPO1.179e-1131.40ATP-dependent RNA helicase rok1 OS=Schizosaccharom... [more]
ROK1_CRYNE1.179e-1134.02ATP-dependent RNA helicase ROK1 OS=Cryptococcus ne... [more]
DRS1_ASPOR1.179e-1136.78ATP-dependent RNA helicase drs1 OS=Aspergillus ory... [more]
ROK1_NEUCR1.540e-1136.13ATP-dependent RNA helicase rok-1 OS=Neurospora cra... [more]
DDX52_DICDI1.540e-1154.10Probable ATP-dependent RNA helicase ddx52 OS=Dicty... [more]
RRP3_BOTFB2.011e-1129.77ATP-dependent rRNA helicase rrp3 OS=Botryotinia fu... [more]
ROK1_GIBZE2.011e-1135.65ATP-dependent RNA helicase ROK1 OS=Gibberella zeae... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0002A05_f Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0002A05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712871 ID=CV712871; Name=CV712871; organism=Citrus sinensis; type=EST; length=776bp
GAAGTTTGTAATATACACGTTTGTTACTTTACAGAGCCACAAGGTCACAA
CAAAATTATGTTCACAAGCTATCACAATGCCTCTAATCTTACATTTCCTA
CCTGTTGTACAAAAATGTAATACATTGGCAACTGTTTGCTTTTAATATTA
ACAAAACTTCAATAAGCTAAATGATGTTGTCCGGCATTTGTCTGCTGGAA
CGAGAAATAGAAGAACTGATCAGGAAAAGGTACCAAGTCCTAAGCTCTGA
CATATTGATCAACTCTTGCAATTTGCTCAACGATGAAGAGTGTTTGCACT
TGCACTCGATAGTATCGCACCCATAATTATCCTAATAGTCAGAACATTGG
ATAAATTACTGCTTTGCATGGCCTGTTACTCTGCCTTTGCCCATTCTTGA
TAGCTTGAACCCAATTGTGTGCTTTCTGTGCGCTTCTGATTCAACTGTCT
CTTTTAACTTGTCTAGAGCAGATTTATAAACTGGACGGAGTGACTCAATC
AAACTGGAAGGGATAGAGTGAATGGGACAGGAGTCATTGTCAGCTTTCTG
TAACAGCTTCTTGAAACGCTTCACCTCATCCTTATGCAACAAAGTGAAGC
AACGCCCAAGCTGGCCAGCTCTTGCAGTTCGGCCAGCACGATGAATATAT
GTCTTGATATATGCAGGCTTATCATAATTAACGACATTGTTCACCCCTTC
AACATCCATCCCGCGAGTCATTGCATCTGAGGAAACAAGCACTTGTATCT
TCCCTTCCCGAAATGCCTTCAACGTC
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