CV712871

Overview
NameCV712871
Unique NameCV712871
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length776
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV712871 vs. ExPASy Swiss-Prot
Match: PRP5_ASPTN (Pre-mRNA-processing ATP-dependent RNA helicase prp5 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=prp5 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.011e-11
Identity = 37/102 (36.27%), Postives = 58/102 (56.86%), Query Frame = -2
Query:  485 TLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRF-----KKLLQKADNDSCPIHSIPSSLIESLR 775
            T++ F+ G   VL+++    RG+DV+ +  VVNYD P +++ Y+HRAGRT RAG  G   T L +D+ +RF     K L Q       P+  +  S +E ++
Sbjct:  843 TIEDFKAGIFPVLIATSVAARGLDVKQLKLVVNYDAPNHLEDYVHRAGRTGRAGNTGTAVTFLTEDQ-ERFSVDIAKALKQSGQKVPEPVQQMVDSFLEKVK 943          
BLAST of CV712871 vs. ExPASy Swiss-Prot
Match: PRP5_ASPOR (Pre-mRNA-processing ATP-dependent RNA helicase prp5 OS=Aspergillus oryzae GN=prp5 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.011e-11
Identity = 36/101 (35.64%), Postives = 57/101 (56.44%), Query Frame = -2
Query:  485 TLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE----VKRFKKLLQKADNDSCPIHSIPSSLIESLR 775
            T++ F+ G   VL+++    RG+DV+ +  VVNYD P +++ Y+HRAGRT RAG  G   T L +D+    V   K L Q   +   P+  +  S +E ++
Sbjct:  848 TIEDFKAGIFPVLIATSVAARGLDVKQLKLVVNYDAPNHLEDYVHRAGRTGRAGNTGTAVTFLTEDQERYSVDIAKALKQSGQSVPEPVQKMVDSFLEKVK 948          
BLAST of CV712871 vs. ExPASy Swiss-Prot
Match: DRS1_ASPTN (ATP-dependent RNA helicase drs1 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=drs1 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.011e-11
Identity = 36/120 (30.00%), Postives = 66/120 (55.00%), Query Frame = -2
Query:  422 TLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQ--KADNDSCPIHSIPSSLIESLRPVYKSALDKLKETVESEAHRK 775
            +++ FR+GK+  L+++D  +RG+D++GV  V+NY+ P   + Y+HR GRTARAG+ GR  T+  + + K  K  ++  KA         +  ++ +          +++ E +E E   K
Sbjct:  591 SVENFRDGKVAFLLATDLASRGLDIKGVETVINYEAPQSHEIYLHRVGRTARAGRSGRACTIAAEPDRKVVKAAVKASKAQGAKVASRVVDPAVADQWAKKAADLEEEINEVLEEEKTEK 710          
BLAST of CV712871 vs. ExPASy Swiss-Prot
Match: DEAD_BUCBP (Cold-shock DEAD box protein A homolog OS=Buchnera aphidicola subsp. Baizongia pistaciae GN=deaD PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.011e-11
Identity = 35/103 (33.98%), Postives = 63/103 (61.17%), Query Frame = -2
Query:  467 TLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSIPSSLIESLRPVYKSA 775
            TL+  ++G++ +L+++D   RG+DV+ ++ V+NYD P   ++Y+HR GRT RAG+ G+    +   E +R  + +++A N S    ++P S   S R + K A
Sbjct:  286 TLEKLKDGRLDILIATDVAARGLDVDRISFVINYDIPMDSESYVHRIGRTGRAGRKGKALLFVENRE-RRLLRNIERAMNISISEVNLPKSDFLSKRRLEKFA 387          
BLAST of CV712871 vs. ExPASy Swiss-Prot
Match: DDX47_CAEEL (Putative ATP-dependent RNA helicase T26G10.1 OS=Caenorhabditis elegans GN=T26G10.1 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.011e-11
Identity = 40/122 (32.79%), Postives = 69/122 (56.56%), Query Frame = -2
Query:  422 TLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKK----LLQKADNDSCPIHSIPSSLIESLRPVYKSALDKLKETVESEAHRK 775
            +L  F+    ++LV +D   RG+D+  V+ V+NYD P+  K Y+HR GRTARAG+ G   T++ + +V+ ++K    L +K D   C + +    L+E  +   ++A  ++KE  E +   K
Sbjct:  325 SLNKFKSKAREILVCTDVAARGLDIPHVDMVINYDMPSQSKDYVHRVGRTARAGRSGIAITVVTQYDVEAYQKIEANLGKKLDEYKC-VENEVMVLVERTQEATENARIEMKEMDEKKKSGK 445          
BLAST of CV712871 vs. ExPASy Swiss-Prot
Match: DBP5_USTMA (ATP-dependent RNA helicase DBP5 OS=Ustilago maydis GN=DBP5 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.011e-11
Identity = 38/113 (33.63%), Postives = 64/113 (56.64%), Query Frame = -2
Query:  455 TLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKP------AYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSIPSSLIESLRPVYKSALDKL 775
            T+ AFR+GK +VL+S++ + RG+D++ V  V+NYD P      A  +TY+HR GRT R G+ G     +H  +   +   ++KA    C I  + ++ +E +    K AL ++
Sbjct:  344 TIDAFRDGKSKVLISTNVIARGIDIQQVTLVINYDMPLTQTGEADAETYLHRIGRTGRFGRKGVSINFVHDQQSWSYMDQIEKA--LKCQITRVATNDLEEMEYTIKEALKQI 454          
BLAST of CV712871 vs. ExPASy Swiss-Prot
Match: CSHA_BACSU (DEAD-box ATP-dependent RNA helicase cshA OS=Bacillus subtilis GN=cshA PE=1 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 2.011e-11
Identity = 37/114 (32.46%), Postives = 58/114 (50.88%), Query Frame = -2
Query:  431 LKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSIPSSLIESLRPVYKSALDKLKETVESEA 772
            L+ F+EG I+VLV++D   RG+D+ GV +V N+D P   ++Y+HR GRT RAG+ G   T +   E                       S++ ++    K  +D++KE    EA
Sbjct:  284 LRKFKEGAIEVLVATDVAARGLDISGVTHVYNFDVPQDPESYVHRIGRTGRAGKTGMAMTFITPRE----------------------KSMLRAIEQTTKRKMDRMKEPTLDEA 375          
BLAST of CV712871 vs. ExPASy Swiss-Prot
Match: YR458_MIMIV (Putative ATP-dependent RNA helicase R458 OS=Acanthamoeba polyphaga mimivirus GN=MIMI_R458 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.627e-11
Identity = 33/80 (41.25%), Postives = 54/80 (67.50%), Query Frame = -2
Query:  530 KAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDS 769
            K F E KI++L+S+D  +RG+DV+G+N V N+D P  ++TYIHR GR+ R G+ G   +L+  ++ K   + +++ DN S
Sbjct:  429 KDFVENKIRLLISTDLTSRGLDVQGINVVFNFDMPDTLETYIHRVGRSGRYGRKGVSISLILVNQNKNEMEKVEQIDNCS 508          
BLAST of CV712871 vs. ExPASy Swiss-Prot
Match: ROK1_YEAST (ATP-dependent RNA helicase ROK1 OS=Saccharomyces cerevisiae GN=ROK1 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.627e-11
Identity = 36/132 (27.27%), Postives = 67/132 (50.76%), Query Frame = -2
Query:  380 LKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSIPSSLIESLRPVYKSALDKLKETVES-EAHRKHTIGFKLSRMGKGR 772
            ++ F+ G++  L+ +D + RG+D +GVN V+NYD P   + Y+HR GRT R G+ G+  T   K +    K ++       C +      + +  R        K KE++++ +AH++      + +M K +
Sbjct:  415 IERFKTGELWCLICTDVLARGIDFKGVNLVINYDVPGSSQAYVHRIGRTGRGGRSGKAITFYTKQDSVAIKPIINVMKQSGCEVSEWMDKMAKMTR--------KEKESIKNGKAHKERKQITTVPKMDKAK 538          
BLAST of CV712871 vs. ExPASy Swiss-Prot
Match: ROK1_YEAS7 (ATP-dependent RNA helicase ROK1 OS=Saccharomyces cerevisiae (strain YJM789) GN=ROK1 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.627e-11
Identity = 36/132 (27.27%), Postives = 67/132 (50.76%), Query Frame = -2
Query:  380 LKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSIPSSLIESLRPVYKSALDKLKETVES-EAHRKHTIGFKLSRMGKGR 772
            ++ F+ G++  L+ +D + RG+D +GVN V+NYD P   + Y+HR GRT R G+ G+  T   K +    K ++       C +      + +  R        K KE++++ +AH++      + +M K +
Sbjct:  415 IERFKTGELWCLICTDVLARGIDFKGVNLVINYDVPGSSQAYVHRIGRTGRGGRSGKAITFYTKQDSVAIKPIINVMKQSGCEVSEWMDKMAKMTR--------KEKESIKNGKAHKERKQITTVPKMDKAK 538          
The following BLAST results are available for this feature:
BLAST of CV712871 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 168
Match NameE-valueIdentityDescription
PRP5_ASPTN2.011e-1136.27Pre-mRNA-processing ATP-dependent RNA helicase prp... [more]
PRP5_ASPOR2.011e-1135.64Pre-mRNA-processing ATP-dependent RNA helicase prp... [more]
DRS1_ASPTN2.011e-1130.00ATP-dependent RNA helicase drs1 OS=Aspergillus ter... [more]
DEAD_BUCBP2.011e-1133.98Cold-shock DEAD box protein A homolog OS=Buchnera ... [more]
DDX47_CAEEL2.011e-1132.79Putative ATP-dependent RNA helicase T26G10.1 OS=Ca... [more]
DBP5_USTMA2.011e-1133.63ATP-dependent RNA helicase DBP5 OS=Ustilago maydis... [more]
CSHA_BACSU2.011e-1132.46DEAD-box ATP-dependent RNA helicase cshA OS=Bacill... [more]
YR458_MIMIV2.627e-1141.25Putative ATP-dependent RNA helicase R458 OS=Acanth... [more]
ROK1_YEAST2.627e-1127.27ATP-dependent RNA helicase ROK1 OS=Saccharomyces c... [more]
ROK1_YEAS72.627e-1127.27ATP-dependent RNA helicase ROK1 OS=Saccharomyces c... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0002A05_f Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0002A05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712871 ID=CV712871; Name=CV712871; organism=Citrus sinensis; type=EST; length=776bp
GAAGTTTGTAATATACACGTTTGTTACTTTACAGAGCCACAAGGTCACAA
CAAAATTATGTTCACAAGCTATCACAATGCCTCTAATCTTACATTTCCTA
CCTGTTGTACAAAAATGTAATACATTGGCAACTGTTTGCTTTTAATATTA
ACAAAACTTCAATAAGCTAAATGATGTTGTCCGGCATTTGTCTGCTGGAA
CGAGAAATAGAAGAACTGATCAGGAAAAGGTACCAAGTCCTAAGCTCTGA
CATATTGATCAACTCTTGCAATTTGCTCAACGATGAAGAGTGTTTGCACT
TGCACTCGATAGTATCGCACCCATAATTATCCTAATAGTCAGAACATTGG
ATAAATTACTGCTTTGCATGGCCTGTTACTCTGCCTTTGCCCATTCTTGA
TAGCTTGAACCCAATTGTGTGCTTTCTGTGCGCTTCTGATTCAACTGTCT
CTTTTAACTTGTCTAGAGCAGATTTATAAACTGGACGGAGTGACTCAATC
AAACTGGAAGGGATAGAGTGAATGGGACAGGAGTCATTGTCAGCTTTCTG
TAACAGCTTCTTGAAACGCTTCACCTCATCCTTATGCAACAAAGTGAAGC
AACGCCCAAGCTGGCCAGCTCTTGCAGTTCGGCCAGCACGATGAATATAT
GTCTTGATATATGCAGGCTTATCATAATTAACGACATTGTTCACCCCTTC
AACATCCATCCCGCGAGTCATTGCATCTGAGGAAACAAGCACTTGTATCT
TCCCTTCCCGAAATGCCTTCAACGTC
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