CX047563

Overview
NameCX047563
Unique NameCX047563
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length501
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX047563 vs. ExPASy Swiss-Prot
Match: RAB2A_RAT (Ras-related protein Rab-2A OS=Rattus norvegicus GN=Rab2a PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 3.191e-11
Identity = 27/68 (39.71%), Postives = 49/68 (72.06%), Query Frame = 2
Query:    8 WVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRL 211
            W+++ ++H + ++V+ L+GNK+DL  +REV  ++G  +A ++G+ F+ETSAKTA N+ + F   AK +
Sbjct:  100 WLEDARQHSNSNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEI 167          
BLAST of CX047563 vs. ExPASy Swiss-Prot
Match: RAB2A_RABIT (Ras-related protein Rab-2A OS=Oryctolagus cuniculus GN=RAB2A PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 3.191e-11
Identity = 27/68 (39.71%), Postives = 49/68 (72.06%), Query Frame = 2
Query:    8 WVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRL 211
            W+++ ++H + ++V+ L+GNK+DL  +REV  ++G  +A ++G+ F+ETSAKTA N+ + F   AK +
Sbjct:  100 WLEDARQHSNSNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEI 167          
BLAST of CX047563 vs. ExPASy Swiss-Prot
Match: RAB2A_PONAB (Ras-related protein Rab-2A OS=Pongo abelii GN=RAB2A PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 3.191e-11
Identity = 27/68 (39.71%), Postives = 49/68 (72.06%), Query Frame = 2
Query:    8 WVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRL 211
            W+++ ++H + ++V+ L+GNK+DL  +REV  ++G  +A ++G+ F+ETSAKTA N+ + F   AK +
Sbjct:  100 WLEDARQHSNSNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEI 167          
BLAST of CX047563 vs. ExPASy Swiss-Prot
Match: RAB2A_MOUSE (Ras-related protein Rab-2A OS=Mus musculus GN=Rab2a PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 3.191e-11
Identity = 27/68 (39.71%), Postives = 49/68 (72.06%), Query Frame = 2
Query:    8 WVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRL 211
            W+++ ++H + ++V+ L+GNK+DL  +REV  ++G  +A ++G+ F+ETSAKTA N+ + F   AK +
Sbjct:  100 WLEDARQHSNSNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEI 167          
BLAST of CX047563 vs. ExPASy Swiss-Prot
Match: RAB2A_MACFA (Ras-related protein Rab-2A OS=Macaca fascicularis GN=RAB2A PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 3.191e-11
Identity = 27/68 (39.71%), Postives = 49/68 (72.06%), Query Frame = 2
Query:    8 WVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRL 211
            W+++ ++H + ++V+ L+GNK+DL  +REV  ++G  +A ++G+ F+ETSAKTA N+ + F   AK +
Sbjct:  100 WLEDARQHSNSNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEI 167          
BLAST of CX047563 vs. ExPASy Swiss-Prot
Match: RAB2A_HUMAN (Ras-related protein Rab-2A OS=Homo sapiens GN=RAB2A PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 3.191e-11
Identity = 27/68 (39.71%), Postives = 49/68 (72.06%), Query Frame = 2
Query:    8 WVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRL 211
            W+++ ++H + ++V+ L+GNK+DL  +REV  ++G  +A ++G+ F+ETSAKTA N+ + F   AK +
Sbjct:  100 WLEDARQHSNSNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEI 167          
BLAST of CX047563 vs. ExPASy Swiss-Prot
Match: RAB2A_CHICK (Ras-related protein Rab-2A OS=Gallus gallus GN=RAB2A PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 3.191e-11
Identity = 27/68 (39.71%), Postives = 49/68 (72.06%), Query Frame = 2
Query:    8 WVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRL 211
            W+++ ++H + ++V+ L+GNK+DL  +REV  ++G  +A ++G+ F+ETSAKTA N+ + F   AK +
Sbjct:  100 WLEDARQHSNSNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEI 167          
BLAST of CX047563 vs. ExPASy Swiss-Prot
Match: RAB2A_CANFA (Ras-related protein Rab-2A OS=Canis familiaris GN=RAB2A PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 3.191e-11
Identity = 27/68 (39.71%), Postives = 49/68 (72.06%), Query Frame = 2
Query:    8 WVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRL 211
            W+++ ++H + ++V+ L+GNK+DL  +REV  ++G  +A ++G+ F+ETSAKTA N+ + F   AK +
Sbjct:  100 WLEDARQHSNSNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEI 167          
BLAST of CX047563 vs. ExPASy Swiss-Prot
Match: RB11A_RAT (Ras-related protein Rab-11A OS=Rattus norvegicus GN=Rab11a PE=1 SV=3)

HSP 1 Score: 67.3958 bits (163), Expect = 4.168e-11
Identity = 32/70 (45.71%), Postives = 44/70 (62.86%), Query Frame = 2
Query:    8 WVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLPR 217
            W+KEL+ H   +IV+ LVGNK+DL   R VP  +   +AEKNG+ FIETSA  + N+   F+ I   + R
Sbjct:  105 WLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYR 174          
BLAST of CX047563 vs. ExPASy Swiss-Prot
Match: RB11A_RABIT (Ras-related protein Rab-11A OS=Oryctolagus cuniculus GN=RAB11A PE=2 SV=3)

HSP 1 Score: 67.3958 bits (163), Expect = 4.168e-11
Identity = 32/70 (45.71%), Postives = 44/70 (62.86%), Query Frame = 2
Query:    8 WVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLPR 217
            W+KEL+ H   +IV+ LVGNK+DL   R VP  +   +AEKNG+ FIETSA  + N+   F+ I   + R
Sbjct:  105 WLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYR 174          
The following BLAST results are available for this feature:
BLAST of CX047563 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 72
Match NameE-valueIdentityDescription
RAB2A_RAT3.191e-1139.71Ras-related protein Rab-2A OS=Rattus norvegicus GN... [more]
RAB2A_RABIT3.191e-1139.71Ras-related protein Rab-2A OS=Oryctolagus cuniculu... [more]
RAB2A_PONAB3.191e-1139.71Ras-related protein Rab-2A OS=Pongo abelii GN=RAB2... [more]
RAB2A_MOUSE3.191e-1139.71Ras-related protein Rab-2A OS=Mus musculus GN=Rab2... [more]
RAB2A_MACFA3.191e-1139.71Ras-related protein Rab-2A OS=Macaca fascicularis ... [more]
RAB2A_HUMAN3.191e-1139.71Ras-related protein Rab-2A OS=Homo sapiens GN=RAB2... [more]
RAB2A_CHICK3.191e-1139.71Ras-related protein Rab-2A OS=Gallus gallus GN=RAB... [more]
RAB2A_CANFA3.191e-1139.71Ras-related protein Rab-2A OS=Canis familiaris GN=... [more]
RB11A_RAT4.168e-1145.71Ras-related protein Rab-11A OS=Rattus norvegicus G... [more]
RB11A_RABIT4.168e-1145.71Ras-related protein Rab-11A OS=Oryctolagus cunicul... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_14H06_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-14H06-P11-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047563 ID=CX047563; Name=CX047563; organism=Citrus sinensis; type=EST; length=501bp
GCAATACTGGGTTAAGGAGCTACAAAAACATGGAAGTCCTGACATAGTCA
TGGCTTTAGTTGGTAACAAGGCTGATCTTCATGAGAAGCGAGAAGTACCA
GCTCAAGATGGCATTGAGTATGCGGAGAAGAATGGGATGTTCTTTATCGA
AACATCGGCCAAGACTGCAGATAATATAAATCAGCTGTTTGAGGAAATTG
CTAAGCGACTTCCCCGCCCATCACCTTCTTCATGATTGTGGATTCTGGAA
TCTGAACTGCTGTGTCTGCTGATGTAACGCCGAATCCTGTCAGTTTGTCA
TATCAAAGATTTGTGTATATTGTGATATATGATGTGGTTCCCTGTTTCAT
TTTGCAACTGCATTATGATTTATGAATCTCACTTGGAAACTTTCTGTTGC
AACCTTAAATCTTAAGGGTGATATAAACATTTAGACGCCGCAATGATGCA
ACCAAAGAGTTGAATTATAGATTATTTTACCTTTTAAAAAAAAAAAAAAA
A
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