CX047563

Overview
NameCX047563
Unique NameCX047563
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length501
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX047563 vs. ExPASy Swiss-Prot
Match: RB11A_PONAB (Ras-related protein Rab-11A OS=Pongo abelii GN=RAB11A PE=2 SV=3)

HSP 1 Score: 67.3958 bits (163), Expect = 4.168e-11
Identity = 32/70 (45.71%), Postives = 44/70 (62.86%), Query Frame = 2
Query:    8 WVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLPR 217
            W+KEL+ H   +IV+ LVGNK+DL   R VP  +   +AEKNG+ FIETSA  + N+   F+ I   + R
Sbjct:  105 WLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYR 174          
BLAST of CX047563 vs. ExPASy Swiss-Prot
Match: RB11A_PIG (Ras-related protein Rab-11A OS=Sus scrofa GN=RAB11A PE=2 SV=3)

HSP 1 Score: 67.3958 bits (163), Expect = 4.168e-11
Identity = 32/70 (45.71%), Postives = 44/70 (62.86%), Query Frame = 2
Query:    8 WVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLPR 217
            W+KEL+ H   +IV+ LVGNK+DL   R VP  +   +AEKNG+ FIETSA  + N+   F+ I   + R
Sbjct:  105 WLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYR 174          
BLAST of CX047563 vs. ExPASy Swiss-Prot
Match: RB11A_MOUSE (Ras-related protein Rab-11A OS=Mus musculus GN=Rab11a PE=1 SV=3)

HSP 1 Score: 67.3958 bits (163), Expect = 4.168e-11
Identity = 32/70 (45.71%), Postives = 44/70 (62.86%), Query Frame = 2
Query:    8 WVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLPR 217
            W+KEL+ H   +IV+ LVGNK+DL   R VP  +   +AEKNG+ FIETSA  + N+   F+ I   + R
Sbjct:  105 WLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYR 174          
BLAST of CX047563 vs. ExPASy Swiss-Prot
Match: RB11A_HUMAN (Ras-related protein Rab-11A OS=Homo sapiens GN=RAB11A PE=1 SV=3)

HSP 1 Score: 67.3958 bits (163), Expect = 4.168e-11
Identity = 32/70 (45.71%), Postives = 44/70 (62.86%), Query Frame = 2
Query:    8 WVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLPR 217
            W+KEL+ H   +IV+ LVGNK+DL   R VP  +   +AEKNG+ FIETSA  + N+   F+ I   + R
Sbjct:  105 WLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYR 174          
BLAST of CX047563 vs. ExPASy Swiss-Prot
Match: RB11A_CHICK (Ras-related protein Rab-11A OS=Gallus gallus GN=RAB11A PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 4.168e-11
Identity = 32/70 (45.71%), Postives = 44/70 (62.86%), Query Frame = 2
Query:    8 WVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLPR 217
            W+KEL+ H   +IV+ LVGNK+DL   R VP  +   +AEKNG+ FIETSA  + N+   F+ I   + R
Sbjct:  105 WLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYR 174          
BLAST of CX047563 vs. ExPASy Swiss-Prot
Match: RB11A_CANFA (Ras-related protein Rab-11A OS=Canis familiaris GN=RAB11A PE=2 SV=3)

HSP 1 Score: 67.3958 bits (163), Expect = 4.168e-11
Identity = 32/70 (45.71%), Postives = 44/70 (62.86%), Query Frame = 2
Query:    8 WVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLPR 217
            W+KEL+ H   +IV+ LVGNK+DL   R VP  +   +AEKNG+ FIETSA  + N+   F+ I   + R
Sbjct:  105 WLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYR 174          
BLAST of CX047563 vs. ExPASy Swiss-Prot
Match: RAB2B_HUMAN (Ras-related protein Rab-2B OS=Homo sapiens GN=RAB2B PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 4.168e-11
Identity = 28/70 (40.00%), Postives = 50/70 (71.43%), Query Frame = 2
Query:    8 WVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLPR 217
            W+++ ++H S ++V+ L+GNK+DL  +R+V  ++G  +A ++G+ F+ETSAKTA N+ + F   AK + R
Sbjct:  100 WLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEIYR 169          
BLAST of CX047563 vs. ExPASy Swiss-Prot
Match: RB11E_LOTJA (Ras-related protein Rab11E OS=Lotus japonicus GN=RAB11E PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 5.443e-11
Identity = 30/70 (42.86%), Postives = 45/70 (64.29%), Query Frame = 2
Query:    8 WVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLPR 217
            W+KEL+ H  P+IV+ L+GNK+DL     V  +DG  +AEK  ++F+ETSA  A N+   F E+  ++ R
Sbjct:  107 WLKELRDHTDPNIVVMLIGNKSDLRHLVTVSTEDGKAFAEKESLYFMETSALEATNVENAFSEVLTQIYR 176          
BLAST of CX047563 vs. ExPASy Swiss-Prot
Match: YPTV4_VOLCA (GTP-binding protein yptV4 OS=Volvox carteri GN=YPTV4 PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 7.109e-11
Identity = 25/68 (36.76%), Postives = 49/68 (72.06%), Query Frame = 2
Query:    8 WVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRL 211
            W+++ ++H +P++ + L+GNK DL  +R V  ++G ++A+++G+ F+ETSA+TA N+ + F   AK +
Sbjct:  100 WLEDARQHANPNMTIMLIGNKCDLTHRRAVTTEEGEQFAKEHGLIFLETSARTAHNVEEAFINTAKEI 167          
BLAST of CX047563 vs. ExPASy Swiss-Prot
Match: YPTC4_CHLRE (GTP-binding protein YPTC4 OS=Chlamydomonas reinhardtii GN=YPTC4 PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 7.109e-11
Identity = 25/68 (36.76%), Postives = 49/68 (72.06%), Query Frame = 2
Query:    8 WVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRL 211
            W+++ ++H +P++ + L+GNK DL  +R V  ++G ++A+++G+ F+ETSA+TA N+ + F   AK +
Sbjct:  100 WLEDARQHANPNMTIMLIGNKCDLTHRRAVTTEEGEQFAKEHGLIFLETSARTAHNVEEAFINTAKEI 167          
The following BLAST results are available for this feature:
BLAST of CX047563 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 72
Match NameE-valueIdentityDescription
RB11A_PONAB4.168e-1145.71Ras-related protein Rab-11A OS=Pongo abelii GN=RAB... [more]
RB11A_PIG4.168e-1145.71Ras-related protein Rab-11A OS=Sus scrofa GN=RAB11... [more]
RB11A_MOUSE4.168e-1145.71Ras-related protein Rab-11A OS=Mus musculus GN=Rab... [more]
RB11A_HUMAN4.168e-1145.71Ras-related protein Rab-11A OS=Homo sapiens GN=RAB... [more]
RB11A_CHICK4.168e-1145.71Ras-related protein Rab-11A OS=Gallus gallus GN=RA... [more]
RB11A_CANFA4.168e-1145.71Ras-related protein Rab-11A OS=Canis familiaris GN... [more]
RAB2B_HUMAN4.168e-1140.00Ras-related protein Rab-2B OS=Homo sapiens GN=RAB2... [more]
RB11E_LOTJA5.443e-1142.86Ras-related protein Rab11E OS=Lotus japonicus GN=R... [more]
YPTV4_VOLCA7.109e-1136.76GTP-binding protein yptV4 OS=Volvox carteri GN=YPT... [more]
YPTC4_CHLRE7.109e-1136.76GTP-binding protein YPTC4 OS=Chlamydomonas reinhar... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_14H06_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-14H06-P11-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047563 ID=CX047563; Name=CX047563; organism=Citrus sinensis; type=EST; length=501bp
GCAATACTGGGTTAAGGAGCTACAAAAACATGGAAGTCCTGACATAGTCA
TGGCTTTAGTTGGTAACAAGGCTGATCTTCATGAGAAGCGAGAAGTACCA
GCTCAAGATGGCATTGAGTATGCGGAGAAGAATGGGATGTTCTTTATCGA
AACATCGGCCAAGACTGCAGATAATATAAATCAGCTGTTTGAGGAAATTG
CTAAGCGACTTCCCCGCCCATCACCTTCTTCATGATTGTGGATTCTGGAA
TCTGAACTGCTGTGTCTGCTGATGTAACGCCGAATCCTGTCAGTTTGTCA
TATCAAAGATTTGTGTATATTGTGATATATGATGTGGTTCCCTGTTTCAT
TTTGCAACTGCATTATGATTTATGAATCTCACTTGGAAACTTTCTGTTGC
AACCTTAAATCTTAAGGGTGATATAAACATTTAGACGCCGCAATGATGCA
ACCAAAGAGTTGAATTATAGATTATTTTACCTTTTAAAAAAAAAAAAAAA
A
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