CX047563

Overview
NameCX047563
Unique NameCX047563
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length501
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX047563 vs. ExPASy Swiss-Prot
Match: RAB2B_MOUSE (Ras-related protein Rab-2B OS=Mus musculus GN=Rab2b PE=2 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 9.285e-11
Identity = 27/70 (38.57%), Postives = 50/70 (71.43%), Query Frame = 2 
Query:    8 WVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLPR 217
            W+++ ++H S ++V+ L+GNK+DL  +R+V  ++G  +A ++G+ F+ETSAKTA N+ + +   AK + R
Sbjct:  100 WLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAYINTAKEIYR 169
[Close]
BLAST of CX047563 vs. ExPASy Swiss-Prot
Match: RAB2A_DICDI (Ras-related protein Rab-2A OS=Dictyostelium discoideum GN=rab2A PE=2 SV=2)

HSP 1 Score: 66.2402 bits (160), Expect = 9.285e-11
Identity = 25/68 (36.76%), Postives = 48/68 (70.59%), Query Frame = 2 
Query:    8 WVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRL 211
            W+K+ + + + ++ + L+GNK+D+  KR V  ++G ++A++NG+ F+ETSAKTA N+ + F   A ++
Sbjct:   99 WLKDARSYANSNMTIILIGNKSDMESKRAVSYEEGRQFADENGLIFLETSAKTASNVEEAFVNTASKI 166
The following BLAST results are available for this feature:
BLAST of CX047563 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 72
Match NameE-valueIdentityDescription
RAB2B_MOUSE9.285e-1138.57Ras-related protein Rab-2B OS=Mus musculus GN=Rab2... [more]
RAB2A_DICDI9.285e-1136.76Ras-related protein Rab-2A OS=Dictyostelium discoi... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_14H06_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-14H06-P11-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047563 ID=CX047563; Name=CX047563; organism=Citrus sinensis; type=EST; length=501bp
GCAATACTGGGTTAAGGAGCTACAAAAACATGGAAGTCCTGACATAGTCA
TGGCTTTAGTTGGTAACAAGGCTGATCTTCATGAGAAGCGAGAAGTACCA
GCTCAAGATGGCATTGAGTATGCGGAGAAGAATGGGATGTTCTTTATCGA
AACATCGGCCAAGACTGCAGATAATATAAATCAGCTGTTTGAGGAAATTG
CTAAGCGACTTCCCCGCCCATCACCTTCTTCATGATTGTGGATTCTGGAA
TCTGAACTGCTGTGTCTGCTGATGTAACGCCGAATCCTGTCAGTTTGTCA
TATCAAAGATTTGTGTATATTGTGATATATGATGTGGTTCCCTGTTTCAT
TTTGCAACTGCATTATGATTTATGAATCTCACTTGGAAACTTTCTGTTGC
AACCTTAAATCTTAAGGGTGATATAAACATTTAGACGCCGCAATGATGCA
ACCAAAGAGTTGAATTATAGATTATTTTACCTTTTAAAAAAAAAAAAAAA
A
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