CV712850

Overview
NameCV712850
Unique NameCV712850
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length434
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV712850 vs. ExPASy Swiss-Prot
Match: NDK_CHLSY (Nucleoside diphosphate kinase OS=Chloroflexus aurantiacus (strain ATCC 29364 / DSM 637 / Y-400-fl) GN=ndk PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.566e-12
Identity = 33/62 (53.23%), Postives = 43/62 (69.35%), Query Frame = 2
Query:    2 GATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI--NWQSSLHPWIYE 181
            GATNPA++APGTIRGD  +  GRN+IH SDS ES ++E A++F    +   W  +L  WIYE
Sbjct:   90 GATNPAKAAPGTIRGDFGVDIGRNLIHASDSPESGERETAIFFQPHELIGEWNRALDNWIYE 151          
BLAST of CV712850 vs. ExPASy Swiss-Prot
Match: NDK_CHLAA (Nucleoside diphosphate kinase OS=Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl) GN=ndk PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.566e-12
Identity = 33/62 (53.23%), Postives = 43/62 (69.35%), Query Frame = 2
Query:    2 GATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI--NWQSSLHPWIYE 181
            GATNPA++APGTIRGD  +  GRN+IH SDS ES ++E A++F    +   W  +L  WIYE
Sbjct:   90 GATNPAKAAPGTIRGDFGVDIGRNLIHASDSPESGERETAIFFQPHELIGEWNRALDNWIYE 151          
BLAST of CV712850 vs. ExPASy Swiss-Prot
Match: NDK_CARHZ (Nucleoside diphosphate kinase OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=ndk PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.351e-12
Identity = 34/61 (55.74%), Postives = 45/61 (73.77%), Query Frame = 2
Query:    2 GATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGP-INWQSSLHPWIYE 181
            GATNP ++ PGTIRG   I  GRN+IHGSDS ESA +EIAL+F +   ++++ +L  WIYE
Sbjct:   89 GATNPLKAQPGTIRGTYGIDVGRNVIHGSDSPESAAREIALFFKEEELLSYEKTLDTWIYE 149          
BLAST of CV712850 vs. ExPASy Swiss-Prot
Match: NDK_DEIDV (Nucleoside diphosphate kinase OS=Deinococcus deserti (strain VCD115 / DSM 17065 / LMG 22923) GN=ndk PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 4.377e-12
Identity = 31/48 (64.58%), Postives = 38/48 (79.17%), Query Frame = 2
Query:    2 GATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI 145
            GATNPA +APGTIR D A  TG N+ HGSDS ESAQ+E+AL+F +G +
Sbjct:   89 GATNPANAAPGTIRADFATTTGENVTHGSDSAESAQRELALFFQEGEL 136          
BLAST of CV712850 vs. ExPASy Swiss-Prot
Match: NDK_LISMO (Nucleoside diphosphate kinase OS=Listeria monocytogenes GN=ndk PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.716e-12
Identity = 34/59 (57.63%), Postives = 44/59 (74.58%), Query Frame = 2
Query:    2 GATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF-PDGPINWQSSLHPWI 175
            G TNP ++ PGTIR D AI T RN+IHGSDS ESAQ+EI L+F PD  +++Q ++  WI
Sbjct:   89 GKTNPLEADPGTIRADYAIHTNRNVIHGSDSPESAQREIQLFFAPDEILSYQKAVDTWI 147          
BLAST of CV712850 vs. ExPASy Swiss-Prot
Match: NDK_DESRM (Nucleoside diphosphate kinase OS=Desulfotomaculum reducens (strain MI-1) GN=ndk PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.716e-12
Identity = 33/61 (54.10%), Postives = 45/61 (73.77%), Query Frame = 2
Query:    2 GATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF-PDGPINWQSSLHPWIYE 181
            GATNP ++APGTIR    +  GRNIIHGSDS+ESAQ+EI ++F  +  I++  ++  WIYE
Sbjct:   89 GATNPLKAAPGTIRATFGVDVGRNIIHGSDSLESAQREIGIFFKSEELIDYDRAIDTWIYE 149          
BLAST of CV712850 vs. ExPASy Swiss-Prot
Match: NDK_SYNPX (Nucleoside diphosphate kinase OS=Synechococcus sp. (strain WH8102) GN=ndk PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 9.751e-12
Identity = 33/61 (54.10%), Postives = 41/61 (67.21%), Query Frame = 2
Query:    2 GATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPIN-WQSSLHPWIYE 181
            GAT P ++ PGTIRGDLA+  GRN+IHGSD+ E+A+ EI LWF    +N W  S   W  E
Sbjct:   90 GATKPLEAEPGTIRGDLAVNIGRNVIHGSDAPETAEFEIGLWFDAAELNDWTPSDQTWRVE 150          
BLAST of CV712850 vs. ExPASy Swiss-Prot
Match: NDK_ROSS1 (Nucleoside diphosphate kinase OS=Roseiflexus sp. (strain RS-1) GN=ndk PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.273e-11
Identity = 32/61 (52.46%), Postives = 43/61 (70.49%), Query Frame = 2
Query:    2 GATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF-PDGPINWQSSLHPWIYE 181
            GATNP ++APGTIRGD A+  GRN+IH SDS E+ + E++L+F P+  +    S   WIYE
Sbjct:   89 GATNPVKAAPGTIRGDFALDIGRNLIHASDSPENGEMEVSLFFRPEELVEMHRSTDQWIYE 149          
BLAST of CV712850 vs. ExPASy Swiss-Prot
Match: NDK_PROM5 (Nucleoside diphosphate kinase OS=Prochlorococcus marinus (strain MIT 9515) GN=ndk PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.273e-11
Identity = 35/61 (57.38%), Postives = 42/61 (68.85%), Query Frame = 2
Query:    2 GATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI-NWQSSLHPWIYE 181
            GAT P ++ PGTIRGDLAI  GRNIIHGSD  E+A+ EI LWF    I +W++S   W  E
Sbjct:   91 GATKPLEAEPGTIRGDLAIDIGRNIIHGSDGEETAKFEINLWFDQHEICDWETSDSEWRVE 151          
BLAST of CV712850 vs. ExPASy Swiss-Prot
Match: NDK_DEIRA (Nucleoside diphosphate kinase OS=Deinococcus radiodurans GN=ndk PE=3 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 1.273e-11
Identity = 31/48 (64.58%), Postives = 38/48 (79.17%), Query Frame = 2
Query:    2 GATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI 145
            GATNPA +APGTIR D A  TG N+ HGSDS ESA++E+AL+F DG +
Sbjct:   89 GATNPANAAPGTIRADFATSTGENVTHGSDSPESAERELALFFGDGEL 136          
The following BLAST results are available for this feature:
BLAST of CV712850 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 153
Match NameE-valueIdentityDescription
NDK_CHLSY2.566e-1253.23Nucleoside diphosphate kinase OS=Chloroflexus aura... [more]
NDK_CHLAA2.566e-1253.23Nucleoside diphosphate kinase OS=Chloroflexus aura... [more]
NDK_CARHZ3.351e-1255.74Nucleoside diphosphate kinase OS=Carboxydothermus ... [more]
NDK_DEIDV4.377e-1264.58Nucleoside diphosphate kinase OS=Deinococcus deser... [more]
NDK_LISMO5.716e-1257.63Nucleoside diphosphate kinase OS=Listeria monocyto... [more]
NDK_DESRM5.716e-1254.10Nucleoside diphosphate kinase OS=Desulfotomaculum ... [more]
NDK_SYNPX9.751e-1254.10Nucleoside diphosphate kinase OS=Synechococcus sp.... [more]
NDK_ROSS11.273e-1152.46Nucleoside diphosphate kinase OS=Roseiflexus sp. (... [more]
NDK_PROM51.273e-1157.38Nucleoside diphosphate kinase OS=Prochlorococcus m... [more]
NDK_DEIRA1.273e-1164.58Nucleoside diphosphate kinase OS=Deinococcus radio... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001P18_r Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001P18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712850 ID=CV712850; Name=CV712850; organism=Citrus sinensis; type=EST; length=434bp
TGGAGCCACCAACCCTGCGCAGTCTGCTCCTGGAACCATCCGTGGTGATT
TGGCTATCGTGACGGGCAGGAATATTATCCATGGAAGTGACTCAGTTGAG
AGTGCCCAGAAAGAAATCGCCTTGTGGTTCCCTGATGGCCCTATTAACTG
GCAGAGCAGCCTTCACCCTTGGATCTATGAGTAAACTAATGTTTGGTTGA
GGAGCCTAATTGTTCCTGCAGTTAGACTTATCCCTATCCCTATCCCTATT
TCCTTATTTATGGTTACTCCTTGTTGGTGAACTGTTATGAAGTATTGAGT
TAAATTGAGACCAATCCTGGTTATGTTGGCTGCTTTTATTCTTGTGGTTG
CCATATACAATATTTAAGCTTTTTTGTTGACTGTATTATGAATTGAGTTT
GTTAATGGTTAGCACATGATGGTTGCAAAAAAAA
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