CV712850

Overview
NameCV712850
Unique NameCV712850
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length434
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV712850 vs. ExPASy Swiss-Prot
Match: NDK_OCEIH (Nucleoside diphosphate kinase OS=Oceanobacillus iheyensis GN=ndk PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.705e-11
Identity = 31/60 (51.67%), Postives = 42/60 (70.00%), Query Frame = 2
Query:    2 GATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI-NWQSSLHPWIY 178
            G TNP ++ P TIRGD  I  G+NIIHGSDS ESA++EI L+F +  I +++   + WIY
Sbjct:   89 GKTNPLEADPSTIRGDFGISVGKNIIHGSDSAESAEREITLFFTENEIVSYEKQANNWIY 148          
BLAST of CV712850 vs. ExPASy Swiss-Prot
Match: NDK_METPE (Nucleoside diphosphate kinase OS=Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c) GN=ndk PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.705e-11
Identity = 33/61 (54.10%), Postives = 43/61 (70.49%), Query Frame = 2
Query:    2 GATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFP-DGPINWQSSLHPWIYE 181
            GATNP+++APGTIRGD  +  GRN+IH SD+ ESA +EIAL FP  G + +     P +YE
Sbjct:   89 GATNPSEAAPGTIRGDYGLDIGRNVIHASDAPESAAREIALHFPGTGQVTYTRIDEPVLYE 149          
BLAST of CV712850 vs. ExPASy Swiss-Prot
Match: NDK_METHJ (Nucleoside diphosphate kinase OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=ndk PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.705e-11
Identity = 33/61 (54.10%), Postives = 45/61 (73.77%), Query Frame = 2
Query:    2 GATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF-PDGPINWQSSLHPWIYE 181
            GATNPA +APGTIRGD A+  G N+IHGSDSVE+A +EIA+ F P+  +++      ++YE
Sbjct:   89 GATNPAGAAPGTIRGDYALEIGMNVIHGSDSVETANREIAIHFKPEELVSYTRIDEQYLYE 149          
BLAST of CV712850 vs. ExPASy Swiss-Prot
Match: NDK_BACCR (Nucleoside diphosphate kinase OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=ndk PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.705e-11
Identity = 29/60 (48.33%), Postives = 44/60 (73.33%), Query Frame = 2
Query:    2 GATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGP-INWQSSLHPWIY 178
            G T P ++APGTIRGD  +   +NIIHGSDS+ESA++EIA++F +   +++   ++ WIY
Sbjct:   89 GKTRPHEAAPGTIRGDFGVTVAKNIIHGSDSLESAEREIAIFFKEEELVDYSKLMNEWIY 148          
BLAST of CV712850 vs. ExPASy Swiss-Prot
Match: NDK_BACC1 (Nucleoside diphosphate kinase OS=Bacillus cereus (strain ATCC 10987) GN=ndk PE=3 SV=2)

HSP 1 Score: 67.0106 bits (162), Expect = 3.705e-11
Identity = 29/60 (48.33%), Postives = 44/60 (73.33%), Query Frame = 2
Query:    2 GATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGP-INWQSSLHPWIY 178
            G T P ++APGTIRGD  +   +NIIHGSDS+ESA++EIA++F +   +++   ++ WIY
Sbjct:   89 GKTRPHEAAPGTIRGDFGVTVAKNIIHGSDSLESAEREIAIFFKEEELVDYSKLMNEWIY 148          
BLAST of CV712850 vs. ExPASy Swiss-Prot
Match: NDK_PROMA (Nucleoside diphosphate kinase OS=Prochlorococcus marinus GN=ndk PE=3 SV=2)

HSP 1 Score: 66.6254 bits (161), Expect = 4.839e-11
Identity = 33/61 (54.10%), Postives = 38/61 (62.30%), Query Frame = 2
Query:    2 GATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI-NWQSSLHPWIYE 181
            GAT P ++ PGTIRGDL I  GRN+IHGSD  E+A  EI LWF    + NW  S   W  E
Sbjct:   91 GATKPLEAEPGTIRGDLGINIGRNVIHGSDGPETASFEIDLWFNSSELNNWNPSDQKWRVE 151          
BLAST of CV712850 vs. ExPASy Swiss-Prot
Match: NDK_PELTS (Nucleoside diphosphate kinase OS=Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI) GN=ndk PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.839e-11
Identity = 34/61 (55.74%), Postives = 43/61 (70.49%), Query Frame = 2
Query:    2 GATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF-PDGPINWQSSLHPWIYE 181
            GAT+P ++APGTIRG   I  GRN+IHGSDS  SAQ+EIAL+F  D  + +   L  W+YE
Sbjct:   89 GATDPLKAAPGTIRGTYGIDIGRNVIHGSDSPASAQREIALFFSADELMEYGLELDRWVYE 149          
BLAST of CV712850 vs. ExPASy Swiss-Prot
Match: NDK_METBU (Nucleoside diphosphate kinase OS=Methanococcoides burtonii (strain DSM 6242) GN=ndk PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.839e-11
Identity = 31/61 (50.82%), Postives = 43/61 (70.49%), Query Frame = 2
Query:    2 GATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPIN-WQSSLHPWIYE 181
            GATNP  + PGTIRGDLA+  GRN++H SD+ ESA++EI L F +  I+ +  +   W+YE
Sbjct:   89 GATNPVDALPGTIRGDLAVDMGRNVVHASDAPESAEREIGLHFEESEISGYPRADDEWLYE 149          
BLAST of CV712850 vs. ExPASy Swiss-Prot
Match: NDK_PROMS (Nucleoside diphosphate kinase OS=Prochlorococcus marinus (strain AS9601) GN=ndk PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 6.320e-11
Identity = 32/58 (55.17%), Postives = 41/58 (70.69%), Query Frame = 2
Query:    2 GATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI-NWQSSLHPW 172
            GAT P ++ PGTIRGDLAI  GRNIIHGSD  ++A+ EI LWF +  +  W++S   W
Sbjct:   91 GATKPLEAEPGTIRGDLAIDIGRNIIHGSDGEDTAKFEINLWFNEEELCEWETSDSKW 148          
BLAST of CV712850 vs. ExPASy Swiss-Prot
Match: NDK_PROMM (Nucleoside diphosphate kinase OS=Prochlorococcus marinus (strain MIT 9313) GN=ndk PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 6.320e-11
Identity = 33/61 (54.10%), Postives = 39/61 (63.93%), Query Frame = 2
Query:    2 GATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPIN-WQSSLHPWIYE 181
            GAT P  + PGTIRGDLA+  GRN+IHGSD  ++AQ EI LWF    +N W  S   W  E
Sbjct:   91 GATKPLDAEPGTIRGDLAVNIGRNVIHGSDGPDTAQFEINLWFSAEELNAWTPSDQSWRIE 151          
The following BLAST results are available for this feature:
BLAST of CV712850 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 153
Match NameE-valueIdentityDescription
NDK_OCEIH3.705e-1151.67Nucleoside diphosphate kinase OS=Oceanobacillus ih... [more]
NDK_METPE3.705e-1154.10Nucleoside diphosphate kinase OS=Methanosphaerula ... [more]
NDK_METHJ3.705e-1154.10Nucleoside diphosphate kinase OS=Methanospirillum ... [more]
NDK_BACCR3.705e-1148.33Nucleoside diphosphate kinase OS=Bacillus cereus (... [more]
NDK_BACC13.705e-1148.33Nucleoside diphosphate kinase OS=Bacillus cereus (... [more]
NDK_PROMA4.839e-1154.10Nucleoside diphosphate kinase OS=Prochlorococcus m... [more]
NDK_PELTS4.839e-1155.74Nucleoside diphosphate kinase OS=Pelotomaculum the... [more]
NDK_METBU4.839e-1150.82Nucleoside diphosphate kinase OS=Methanococcoides ... [more]
NDK_PROMS6.320e-1155.17Nucleoside diphosphate kinase OS=Prochlorococcus m... [more]
NDK_PROMM6.320e-1154.10Nucleoside diphosphate kinase OS=Prochlorococcus m... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS08_0001P18_r Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001P18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712850 ID=CV712850; Name=CV712850; organism=Citrus sinensis; type=EST; length=434bp
TGGAGCCACCAACCCTGCGCAGTCTGCTCCTGGAACCATCCGTGGTGATT
TGGCTATCGTGACGGGCAGGAATATTATCCATGGAAGTGACTCAGTTGAG
AGTGCCCAGAAAGAAATCGCCTTGTGGTTCCCTGATGGCCCTATTAACTG
GCAGAGCAGCCTTCACCCTTGGATCTATGAGTAAACTAATGTTTGGTTGA
GGAGCCTAATTGTTCCTGCAGTTAGACTTATCCCTATCCCTATCCCTATT
TCCTTATTTATGGTTACTCCTTGTTGGTGAACTGTTATGAAGTATTGAGT
TAAATTGAGACCAATCCTGGTTATGTTGGCTGCTTTTATTCTTGTGGTTG
CCATATACAATATTTAAGCTTTTTTGTTGACTGTATTATGAATTGAGTTT
GTTAATGGTTAGCACATGATGGTTGCAAAAAAAA
back to top