CV712850

Overview
NameCV712850
Unique NameCV712850
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length434
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV712850 vs. ExPASy Swiss-Prot
Match: NDK_SYNY3 (Nucleoside diphosphate kinase OS=Synechocystis sp. (strain PCC 6803) GN=ndk PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.007e-16
Identity = 36/61 (59.02%), Postives = 50/61 (81.97%), Query Frame = 2
Query:    2 GATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPIN-WQSSLHPWIYE 181
            GAT+P  +APGTIRGD  +  GRNIIHGSD++E+A++EI+LWF D  +N W ++L+PW+YE
Sbjct:   89 GATDPHAAAPGTIRGDYGVSVGRNIIHGSDAIETAKREISLWFKDEEVNEWDATLNPWLYE 149          
BLAST of CV712850 vs. ExPASy Swiss-Prot
Match: NDK_COLLI (Nucleoside diphosphate kinase OS=Columba livia PE=2 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 1.007e-16
Identity = 43/61 (70.49%), Postives = 46/61 (75.41%), Query Frame = 2
Query:    2 GATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF-PDGPINWQSSLHPWIYE 181
            G TNPA S PGTIRGD  I  GRNIIHGSDSVESAQKEI LWF P   I+++S  H WIYE
Sbjct:   93 GETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAQKEINLWFKPAELIDFKSCAHDWIYE 153          
BLAST of CV712850 vs. ExPASy Swiss-Prot
Match: NDKB_PONAB (Nucleoside diphosphate kinase B OS=Pongo abelii GN=NME2 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.315e-16
Identity = 39/61 (63.93%), Postives = 48/61 (78.69%), Query Frame = 2
Query:    2 GATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF-PDGPINWQSSLHPWIYE 181
            G TNPA S PGTIRGD  I  GRNIIHGSDSV+SA+KEI+LWF P+  ++++S  H W+YE
Sbjct:   92 GETNPADSKPGTIRGDFCIQVGRNIIHGSDSVKSAEKEISLWFKPEELVDYKSCAHDWVYE 152          
BLAST of CV712850 vs. ExPASy Swiss-Prot
Match: NDKB_HUMAN (Nucleoside diphosphate kinase B OS=Homo sapiens GN=NME2 PE=1 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.315e-16
Identity = 39/61 (63.93%), Postives = 48/61 (78.69%), Query Frame = 2
Query:    2 GATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF-PDGPINWQSSLHPWIYE 181
            G TNPA S PGTIRGD  I  GRNIIHGSDSV+SA+KEI+LWF P+  ++++S  H W+YE
Sbjct:   92 GETNPADSKPGTIRGDFCIQVGRNIIHGSDSVKSAEKEISLWFKPEELVDYKSCAHDWVYE 152          
BLAST of CV712850 vs. ExPASy Swiss-Prot
Match: NDKA_DROYA (Nucleoside diphosphate kinase (Fragment) OS=Drosophila yakuba GN=awd PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 2.929e-16
Identity = 40/61 (65.57%), Postives = 45/61 (73.77%), Query Frame = 2
Query:    2 GATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGP-INWQSSLHPWIYE 181
            GATNPA S PGTIRGD  I  GRNIIHGSD+VESA+KEIALWF +   + W  +   WIYE
Sbjct:   90 GATNPADSLPGTIRGDFCIQVGRNIIHGSDAVESAEKEIALWFNEKELVTWTPAAKDWIYE 150          
BLAST of CV712850 vs. ExPASy Swiss-Prot
Match: NDKA_DROME (Nucleoside diphosphate kinase OS=Drosophila melanogaster GN=awd PE=1 SV=3)

HSP 1 Score: 83.9593 bits (206), Expect = 2.929e-16
Identity = 40/61 (65.57%), Postives = 45/61 (73.77%), Query Frame = 2
Query:    2 GATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGP-INWQSSLHPWIYE 181
            GATNPA S PGTIRGD  I  GRNIIHGSD+VESA+KEIALWF +   + W  +   WIYE
Sbjct:   93 GATNPADSLPGTIRGDFCIQVGRNIIHGSDAVESAEKEIALWFNEKELVTWTPAAKDWIYE 153          
BLAST of CV712850 vs. ExPASy Swiss-Prot
Match: NDKA2_XENLA (Nucleoside diphosphate kinase A2 OS=Xenopus laevis PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 2.929e-16
Identity = 40/61 (65.57%), Postives = 46/61 (75.41%), Query Frame = 2
Query:    2 GATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGP-INWQSSLHPWIYE 181
            G TNPA S PGTIRGDL I  GRNIIHGSDSV+SA KEIALWF D   + ++S  + W+YE
Sbjct:   93 GETNPADSKPGTIRGDLCIQVGRNIIHGSDSVDSANKEIALWFKDEELVEYKSCAYEWVYE 153          
BLAST of CV712850 vs. ExPASy Swiss-Prot
Match: NDK_CYAP4 (Nucleoside diphosphate kinase OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=ndk PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 3.825e-16
Identity = 39/61 (63.93%), Postives = 47/61 (77.05%), Query Frame = 2
Query:    2 GATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF-PDGPINWQSSLHPWIYE 181
            GATNP  S PGTIRGD  +  GRNIIHGSD+VE+AQ+EIALWF P   ++W+ +L  WIYE
Sbjct:   89 GATNPLNSEPGTIRGDYGVDIGRNIIHGSDAVETAQREIALWFQPAELVSWEPTLTSWIYE 149          
BLAST of CV712850 vs. ExPASy Swiss-Prot
Match: NDK_ANAVT (Nucleoside diphosphate kinase OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=ndk PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 3.825e-16
Identity = 37/61 (60.66%), Postives = 46/61 (75.41%), Query Frame = 2
Query:    2 GATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGP-INWQSSLHPWIYE 181
            GATNP  + PGTIRGD  I  GRN+IHGSD+ E+AQKE++LWF D   +NWQ  L PW++E
Sbjct:   89 GATNPLTAEPGTIRGDFGINIGRNLIHGSDAPETAQKEVSLWFTDAELVNWQPHLTPWLHE 149          
BLAST of CV712850 vs. ExPASy Swiss-Prot
Match: NDK_ANASP (Nucleoside diphosphate kinase OS=Anabaena sp. (strain PCC 7120) GN=ndk PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 3.825e-16
Identity = 37/61 (60.66%), Postives = 46/61 (75.41%), Query Frame = 2
Query:    2 GATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGP-INWQSSLHPWIYE 181
            GATNP  + PGTIRGD  I  GRN+IHGSD+ E+AQKE++LWF D   +NWQ  L PW++E
Sbjct:   89 GATNPLTAEPGTIRGDFGINIGRNLIHGSDAPETAQKEVSLWFTDAELVNWQPHLTPWLHE 149          
The following BLAST results are available for this feature:
BLAST of CV712850 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 153
Match NameE-valueIdentityDescription
NDK_SYNY31.007e-1659.02Nucleoside diphosphate kinase OS=Synechocystis sp.... [more]
NDK_COLLI1.007e-1670.49Nucleoside diphosphate kinase OS=Columba livia PE=... [more]
NDKB_PONAB1.315e-1663.93Nucleoside diphosphate kinase B OS=Pongo abelii GN... [more]
NDKB_HUMAN1.315e-1663.93Nucleoside diphosphate kinase B OS=Homo sapiens GN... [more]
NDKA_DROYA2.929e-1665.57Nucleoside diphosphate kinase (Fragment) OS=Drosop... [more]
NDKA_DROME2.929e-1665.57Nucleoside diphosphate kinase OS=Drosophila melano... [more]
NDKA2_XENLA2.929e-1665.57Nucleoside diphosphate kinase A2 OS=Xenopus laevis... [more]
NDK_CYAP43.825e-1663.93Nucleoside diphosphate kinase OS=Cyanothece sp. (s... [more]
NDK_ANAVT3.825e-1660.66Nucleoside diphosphate kinase OS=Anabaena variabil... [more]
NDK_ANASP3.825e-1660.66Nucleoside diphosphate kinase OS=Anabaena sp. (str... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001P18_r Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001P18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712850 ID=CV712850; Name=CV712850; organism=Citrus sinensis; type=EST; length=434bp
TGGAGCCACCAACCCTGCGCAGTCTGCTCCTGGAACCATCCGTGGTGATT
TGGCTATCGTGACGGGCAGGAATATTATCCATGGAAGTGACTCAGTTGAG
AGTGCCCAGAAAGAAATCGCCTTGTGGTTCCCTGATGGCCCTATTAACTG
GCAGAGCAGCCTTCACCCTTGGATCTATGAGTAAACTAATGTTTGGTTGA
GGAGCCTAATTGTTCCTGCAGTTAGACTTATCCCTATCCCTATCCCTATT
TCCTTATTTATGGTTACTCCTTGTTGGTGAACTGTTATGAAGTATTGAGT
TAAATTGAGACCAATCCTGGTTATGTTGGCTGCTTTTATTCTTGTGGTTG
CCATATACAATATTTAAGCTTTTTTGTTGACTGTATTATGAATTGAGTTT
GTTAATGGTTAGCACATGATGGTTGCAAAAAAAA
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