CV712850

Overview
NameCV712850
Unique NameCV712850
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length434
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV712850 vs. ExPASy Swiss-Prot
Match: NDKA_RAT (Nucleoside diphosphate kinase A OS=Rattus norvegicus GN=Nme1 PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 3.825e-16
Identity = 40/61 (65.57%), Postives = 47/61 (77.05%), Query Frame = 2
Query:    2 GATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF-PDGPINWQSSLHPWIYE 181
            G TNPA S PGTIRGD  I  GRNIIHGSDSVESA+KEI+LWF P+  ++++S    WIYE
Sbjct:   92 GETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEISLWFQPEELVDYKSCAQNWIYE 152          
BLAST of CV712850 vs. ExPASy Swiss-Prot
Match: NDK_NOSP7 (Nucleoside diphosphate kinase OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=ndk PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 4.996e-16
Identity = 38/61 (62.30%), Postives = 46/61 (75.41%), Query Frame = 2
Query:    2 GATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGP-INWQSSLHPWIYE 181
            GATNP  S PGTIRGD  I  GRN+IHGSD+ E+AQ+EIALWF D   +NWQ  + PW++E
Sbjct:   89 GATNPLTSEPGTIRGDFGINIGRNLIHGSDAPETAQQEIALWFKDEELVNWQPHITPWLHE 149          
BLAST of CV712850 vs. ExPASy Swiss-Prot
Match: NDKA_CANFA (Nucleoside diphosphate kinase A OS=Canis familiaris GN=NME1 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 4.996e-16
Identity = 40/61 (65.57%), Postives = 46/61 (75.41%), Query Frame = 2
Query:    2 GATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF-PDGPINWQSSLHPWIYE 181
            G TNPA S PGTIRGD  I  GRNIIHGSDSVESA+KEI LWF P+  ++++S    WIYE
Sbjct:   92 GETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFQPEELVDYKSCAQNWIYE 152          
BLAST of CV712850 vs. ExPASy Swiss-Prot
Match: NDKA_PONAB (Nucleoside diphosphate kinase A OS=Pongo abelii GN=NME1 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 8.522e-16
Identity = 40/61 (65.57%), Postives = 45/61 (73.77%), Query Frame = 2
Query:    2 GATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF-PDGPINWQSSLHPWIYE 181
            G TNPA S PGTIRGD  I  GRNIIHGSDSVESA+KEI LWF P+  +++ S    WIYE
Sbjct:   92 GETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE 152          
BLAST of CV712850 vs. ExPASy Swiss-Prot
Match: NDKA_HUMAN (Nucleoside diphosphate kinase A OS=Homo sapiens GN=NME1 PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 8.522e-16
Identity = 40/61 (65.57%), Postives = 45/61 (73.77%), Query Frame = 2
Query:    2 GATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF-PDGPINWQSSLHPWIYE 181
            G TNPA S PGTIRGD  I  GRNIIHGSDSVESA+KEI LWF P+  +++ S    WIYE
Sbjct:   92 GETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE 152          
BLAST of CV712850 vs. ExPASy Swiss-Prot
Match: NDKB_CANFA (Nucleoside diphosphate kinase B OS=Canis familiaris GN=NME2 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.113e-15
Identity = 39/61 (63.93%), Postives = 47/61 (77.05%), Query Frame = 2
Query:    2 GATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF-PDGPINWQSSLHPWIYE 181
            G TNPA S PGTIRGD  I  GRNIIHGSDSV+SA+KEI+LWF P+  ++++S    WIYE
Sbjct:   92 GETNPADSKPGTIRGDFCIQVGRNIIHGSDSVKSAEKEISLWFKPEELVDYKSCAFDWIYE 152          
BLAST of CV712850 vs. ExPASy Swiss-Prot
Match: NDKB_PIG (Nucleoside diphosphate kinase B OS=Sus scrofa GN=NME2 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.454e-15
Identity = 39/61 (63.93%), Postives = 46/61 (75.41%), Query Frame = 2
Query:    2 GATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF-PDGPINWQSSLHPWIYE 181
            G TNPA S PGTIRGD  I  GRNIIHGSDSV+SA+KEI+LWF P+  + ++S    WIYE
Sbjct:   92 GETNPADSKPGTIRGDFCIQVGRNIIHGSDSVKSAEKEISLWFKPEELVEYKSCAFDWIYE 152          
BLAST of CV712850 vs. ExPASy Swiss-Prot
Match: NDKA_MOUSE (Nucleoside diphosphate kinase A OS=Mus musculus GN=Nme1 PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.454e-15
Identity = 39/61 (63.93%), Postives = 46/61 (75.41%), Query Frame = 2
Query:    2 GATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF-PDGPINWQSSLHPWIYE 181
            G TNPA S PGTIRGD  I  GRNIIHGSDSV+SA+KEI+LWF P+  + ++S    WIYE
Sbjct:   92 GETNPADSKPGTIRGDFCIQVGRNIIHGSDSVKSAEKEISLWFQPEELVEYKSCAQNWIYE 152          
BLAST of CV712850 vs. ExPASy Swiss-Prot
Match: NDK_SYNP6 (Nucleoside diphosphate kinase OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=ndk PE=3 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 1.899e-15
Identity = 35/61 (57.38%), Postives = 46/61 (75.41%), Query Frame = 2
Query:    2 GATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI-NWQSSLHPWIYE 181
            GATNP  + PGTIRGD  +  GRNIIHGSD++E+AQ+EIALWF    + +W  ++ PW+YE
Sbjct:   89 GATNPLTAEPGTIRGDFGVNIGRNIIHGSDAIETAQQEIALWFSPAELSDWTPTIQPWLYE 149          
BLAST of CV712850 vs. ExPASy Swiss-Prot
Match: NDK_SYNE7 (Nucleoside diphosphate kinase OS=Synechococcus elongatus (strain PCC 7942) GN=ndk PE=3 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 1.899e-15
Identity = 35/61 (57.38%), Postives = 46/61 (75.41%), Query Frame = 2
Query:    2 GATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI-NWQSSLHPWIYE 181
            GATNP  + PGTIRGD  +  GRNIIHGSD++E+AQ+EIALWF    + +W  ++ PW+YE
Sbjct:   89 GATNPLTAEPGTIRGDFGVNIGRNIIHGSDAIETAQQEIALWFSPAELSDWTPTIQPWLYE 149          
The following BLAST results are available for this feature:
BLAST of CV712850 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 153
Match NameE-valueIdentityDescription
NDKA_RAT3.825e-1665.57Nucleoside diphosphate kinase A OS=Rattus norvegic... [more]
NDK_NOSP74.996e-1662.30Nucleoside diphosphate kinase OS=Nostoc punctiform... [more]
NDKA_CANFA4.996e-1665.57Nucleoside diphosphate kinase A OS=Canis familiari... [more]
NDKA_PONAB8.522e-1665.57Nucleoside diphosphate kinase A OS=Pongo abelii GN... [more]
NDKA_HUMAN8.522e-1665.57Nucleoside diphosphate kinase A OS=Homo sapiens GN... [more]
NDKB_CANFA1.113e-1563.93Nucleoside diphosphate kinase B OS=Canis familiari... [more]
NDKB_PIG1.454e-1563.93Nucleoside diphosphate kinase B OS=Sus scrofa GN=N... [more]
NDKA_MOUSE1.454e-1563.93Nucleoside diphosphate kinase A OS=Mus musculus GN... [more]
NDK_SYNP61.899e-1557.38Nucleoside diphosphate kinase OS=Synechococcus sp.... [more]
NDK_SYNE71.899e-1557.38Nucleoside diphosphate kinase OS=Synechococcus elo... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001P18_r Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001P18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712850 ID=CV712850; Name=CV712850; organism=Citrus sinensis; type=EST; length=434bp
TGGAGCCACCAACCCTGCGCAGTCTGCTCCTGGAACCATCCGTGGTGATT
TGGCTATCGTGACGGGCAGGAATATTATCCATGGAAGTGACTCAGTTGAG
AGTGCCCAGAAAGAAATCGCCTTGTGGTTCCCTGATGGCCCTATTAACTG
GCAGAGCAGCCTTCACCCTTGGATCTATGAGTAAACTAATGTTTGGTTGA
GGAGCCTAATTGTTCCTGCAGTTAGACTTATCCCTATCCCTATCCCTATT
TCCTTATTTATGGTTACTCCTTGTTGGTGAACTGTTATGAAGTATTGAGT
TAAATTGAGACCAATCCTGGTTATGTTGGCTGCTTTTATTCTTGTGGTTG
CCATATACAATATTTAAGCTTTTTTGTTGACTGTATTATGAATTGAGTTT
GTTAATGGTTAGCACATGATGGTTGCAAAAAAAA
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