CV712850

Overview
NameCV712850
Unique NameCV712850
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length434
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV712850 vs. ExPASy Swiss-Prot
Match: NDK2_TOBAC (Nucleoside diphosphate kinase 2, chloroplastic OS=Nicotiana tabacum GN=NDPK2 PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 7.214e-15
Identity = 34/61 (55.74%), Postives = 46/61 (75.41%), Query Frame = 2
Query:    2 GATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI-NWQSSLHPWIYE 181
            GATNP  + PGTIRGDLA+ TGRN++HGSDS ++ ++EIALWF +G + +W     PW+ E
Sbjct:  172 GATNPLNAEPGTIRGDLAVQTGRNVVHGSDSPDNGKREIALWFGEGELCSWTPVQEPWLIE 232          
BLAST of CV712850 vs. ExPASy Swiss-Prot
Match: NDK_YEAST (Nucleoside diphosphate kinase OS=Saccharomyces cerevisiae GN=YNK1 PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 9.422e-15
Identity = 37/61 (60.66%), Postives = 46/61 (75.41%), Query Frame = 2
Query:    2 GATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF-PDGPINWQSSLHPWIYE 181
            GATNP  SAPGTIRGD  I  GRN+ HGSDSV+SA++EI LWF  +  ++W+S+   WIYE
Sbjct:   93 GATNPLGSAPGTIRGDFGIDLGRNVCHGSDSVDSAEREINLWFKKEELVDWESNQAKWIYE 153          
BLAST of CV712850 vs. ExPASy Swiss-Prot
Match: NDK_BRUMA (Nucleoside diphosphate kinase OS=Brugia malayi GN=NDK PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 9.422e-15
Identity = 36/61 (59.02%), Postives = 44/61 (72.13%), Query Frame = 2
Query:    2 GATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF-PDGPINWQSSLHPWIYE 181
            GATNP  S PGTIRGD +I TGRNI+HGSDS+ SA++EI  WF P+    W S+   W+YE
Sbjct:   93 GATNPLNSMPGTIRGDFSIQTGRNIVHGSDSLPSAEREITHWFKPEELCEWSSATATWVYE 153          
BLAST of CV712850 vs. ExPASy Swiss-Prot
Match: NDKB_BOVIN (Nucleoside diphosphate kinase B OS=Bos taurus GN=NME2 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 9.422e-15
Identity = 39/61 (63.93%), Postives = 44/61 (72.13%), Query Frame = 2
Query:    2 GATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF-PDGPINWQSSLHPWIYE 181
            G TNPA S PGTIRGD  I  GRNIIHGSDSV+SA+KEI LWF P+  I ++     WIYE
Sbjct:   92 GETNPADSKPGTIRGDFCIQVGRNIIHGSDSVKSAEKEINLWFKPEELIEYKPCAFDWIYE 152          
BLAST of CV712850 vs. ExPASy Swiss-Prot
Match: NDK2_ARATH (Nucleoside diphosphate kinase II, chloroplastic OS=Arabidopsis thaliana GN=NDPK2 PE=1 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 9.422e-15
Identity = 35/61 (57.38%), Postives = 46/61 (75.41%), Query Frame = 2
Query:    2 GATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI-NWQSSLHPWIYE 181
            G T+P Q+ PGTIRGDLA+ TGRNI+HGSDS E+ ++EI LWF +G +  W S+L  W+ E
Sbjct:  171 GKTDPLQAEPGTIRGDLAVQTGRNIVHGSDSPENGKREIGLWFKEGELCKWDSALATWLRE 231          
BLAST of CV712850 vs. ExPASy Swiss-Prot
Match: NDK_ARCFU (Nucleoside diphosphate kinase OS=Archaeoglobus fulgidus GN=ndk PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.231e-14
Identity = 35/61 (57.38%), Postives = 47/61 (77.05%), Query Frame = 2
Query:    2 GATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI-NWQSSLHPWIYE 181
            GATNPA++APGTIRGD  +  GRN++H SDS +SA++EI+L+F D  I NW+ +   WIYE
Sbjct:   89 GATNPAEAAPGTIRGDFGLDVGRNVVHASDSPQSAEREISLFFSDDEIVNWEKADEDWIYE 149          
BLAST of CV712850 vs. ExPASy Swiss-Prot
Match: NDK2_SPIOL (Nucleoside diphosphate kinase 2, chloroplastic OS=Spinacia oleracea GN=NDPK2 PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.231e-14
Identity = 34/61 (55.74%), Postives = 46/61 (75.41%), Query Frame = 2
Query:    2 GATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI-NWQSSLHPWIYE 181
            GAT+P Q+ PGTIRGDLA+ TGRN++HGSDS ++ ++EI LWF +G I  W  +  PW+ E
Sbjct:  173 GATDPLQAEPGTIRGDLAVQTGRNVVHGSDSPDNGKREIGLWFKEGEICQWTPAQAPWLRE 233          
BLAST of CV712850 vs. ExPASy Swiss-Prot
Match: NDK_SCHPO (Nucleoside diphosphate kinase OS=Schizosaccharomyces pombe GN=ndk1 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 2.099e-14
Identity = 36/61 (59.02%), Postives = 43/61 (70.49%), Query Frame = 2
Query:    2 GATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPIN-WQSSLHPWIYE 181
            GA+NP  SAPGTIRGD  I  GRN+ HGSDS+ESA +EI LWF    I  +  ++ PWIYE
Sbjct:   91 GASNPLDSAPGTIRGDYGIDLGRNVCHGSDSIESANREIKLWFQPSEIQVYDRTIEPWIYE 151          
BLAST of CV712850 vs. ExPASy Swiss-Prot
Match: NDK4_ARATH (Nucleoside diphosphate kinase IV, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=NDK4 PE=1 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 2.099e-14
Identity = 36/60 (60.00%), Postives = 47/60 (78.33%), Query Frame = 2
Query:    2 GATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF-PDGPINWQSSLHPWIY 178
            GAT+P +S PGTIRGDLA+V GRNIIHGSD  E+A+ EI+LWF P+  +++ S+   WIY
Sbjct:  175 GATDPQKSEPGTIRGDLAVVVGRNIIHGSDGPETAKDEISLWFKPEELVSYTSNAEKWIY 234          
BLAST of CV712850 vs. ExPASy Swiss-Prot
Match: NDK_SYNJB (Nucleoside diphosphate kinase OS=Synechococcus sp. GN=ndk PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.741e-14
Identity = 35/61 (57.38%), Postives = 43/61 (70.49%), Query Frame = 2
Query:    2 GATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGP-INWQSSLHPWIYE 181
            G TNP ++ PGTIRGD  I  GRN+IHGSD VE+AQ+EIALWF +   ++W      WIYE
Sbjct:   89 GKTNPLEAEPGTIRGDFGIDIGRNLIHGSDGVETAQREIALWFDESELVSWTPVAQSWIYE 149          
The following BLAST results are available for this feature:
BLAST of CV712850 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 153
Match NameE-valueIdentityDescription
NDK2_TOBAC7.214e-1555.74Nucleoside diphosphate kinase 2, chloroplastic OS=... [more]
NDK_YEAST9.422e-1560.66Nucleoside diphosphate kinase OS=Saccharomyces cer... [more]
NDK_BRUMA9.422e-1559.02Nucleoside diphosphate kinase OS=Brugia malayi GN=... [more]
NDKB_BOVIN9.422e-1563.93Nucleoside diphosphate kinase B OS=Bos taurus GN=N... [more]
NDK2_ARATH9.422e-1557.38Nucleoside diphosphate kinase II, chloroplastic OS... [more]
NDK_ARCFU1.231e-1457.38Nucleoside diphosphate kinase OS=Archaeoglobus ful... [more]
NDK2_SPIOL1.231e-1455.74Nucleoside diphosphate kinase 2, chloroplastic OS=... [more]
NDK_SCHPO2.099e-1459.02Nucleoside diphosphate kinase OS=Schizosaccharomyc... [more]
NDK4_ARATH2.099e-1460.00Nucleoside diphosphate kinase IV, chloroplastic/mi... [more]
NDK_SYNJB2.741e-1457.38Nucleoside diphosphate kinase OS=Synechococcus sp.... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001P18_r Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001P18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712850 ID=CV712850; Name=CV712850; organism=Citrus sinensis; type=EST; length=434bp
TGGAGCCACCAACCCTGCGCAGTCTGCTCCTGGAACCATCCGTGGTGATT
TGGCTATCGTGACGGGCAGGAATATTATCCATGGAAGTGACTCAGTTGAG
AGTGCCCAGAAAGAAATCGCCTTGTGGTTCCCTGATGGCCCTATTAACTG
GCAGAGCAGCCTTCACCCTTGGATCTATGAGTAAACTAATGTTTGGTTGA
GGAGCCTAATTGTTCCTGCAGTTAGACTTATCCCTATCCCTATCCCTATT
TCCTTATTTATGGTTACTCCTTGTTGGTGAACTGTTATGAAGTATTGAGT
TAAATTGAGACCAATCCTGGTTATGTTGGCTGCTTTTATTCTTGTGGTTG
CCATATACAATATTTAAGCTTTTTTGTTGACTGTATTATGAATTGAGTTT
GTTAATGGTTAGCACATGATGGTTGCAAAAAAAA
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