CV712850

Overview
NameCV712850
Unique NameCV712850
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length434
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV712850 vs. ExPASy Swiss-Prot
Match: NDK_DESAP (Nucleoside diphosphate kinase OS=Desulforudis audaxviator (strain MP104C) GN=ndk PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.777e-13
Identity = 36/61 (59.02%), Postives = 44/61 (72.13%), Query Frame = 2
Query:    2 GATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGP-INWQSSLHPWIYE 181
            GAT PA++ PGTIRG   I  GRNI+HGSDS  SA +EI L+F DG  I ++ +L PWIYE
Sbjct:   89 GATQPAKALPGTIRGTYGIDVGRNIVHGSDSAASAAREIGLFFADGELIEYERALDPWIYE 149          
BLAST of CV712850 vs. ExPASy Swiss-Prot
Match: NDK3_ARATH (Nucleoside diphosphate kinase III, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=NDPK3 PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.321e-13
Identity = 34/60 (56.67%), Postives = 45/60 (75.00%), Query Frame = 2
Query:    2 GATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF-PDGPINWQSSLHPWIY 178
            GAT+P +S PGTIRGDLA+  GRNIIHGSD  E+A+ EI+LWF P   +++ S+   W+Y
Sbjct:  176 GATDPQKSEPGTIRGDLAVTVGRNIIHGSDGPETAKDEISLWFKPQELVSYTSNSEKWLY 235          
BLAST of CV712850 vs. ExPASy Swiss-Prot
Match: NDK_TRIEI (Nucleoside diphosphate kinase OS=Trichodesmium erythraeum (strain IMS101) GN=ndk PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 3.031e-13
Identity = 34/61 (55.74%), Postives = 44/61 (72.13%), Query Frame = 2
Query:    2 GATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGP-INWQSSLHPWIYE 181
            GATNP  + PGTIRGD  I  GRN+IHGSD++E+AQ EI LWF +   ++W+ +L  WI E
Sbjct:   89 GATNPLTAEPGTIRGDYGISLGRNLIHGSDAIETAQTEINLWFKEEELVSWKPTLTSWIVE 149          
BLAST of CV712850 vs. ExPASy Swiss-Prot
Match: NDKB_MERSE (Nucleoside diphosphate kinase B (Fragments) OS=Merluccius senegalensis GN=nme2 PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 3.031e-13
Identity = 34/61 (55.74%), Postives = 43/61 (70.49%), Query Frame = 2
Query:    2 GATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF-PDGPINWQSSLHPWIYE 181
            G TNPA S PG+IRGD  I  GRNIIHGSD+VE+A+ E+ALWF P+  + +      W+YE
Sbjct:   66 GETNPADSKPGSIRGDFCINIGRNIIHGSDTVENAKMEVALWFKPEEFVTYTEKAKAWVYE 126          
BLAST of CV712850 vs. ExPASy Swiss-Prot
Match: NDKB_MERPO (Nucleoside diphosphate kinase B (Fragments) OS=Merluccius polli GN=nme2 PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 3.031e-13
Identity = 34/61 (55.74%), Postives = 43/61 (70.49%), Query Frame = 2
Query:    2 GATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF-PDGPINWQSSLHPWIYE 181
            G TNPA S PG+IRGD  I  GRNIIHGSD+VE+A+ E+ALWF P+  + +      W+YE
Sbjct:   66 GETNPADSKPGSIRGDFCINIGRNIIHGSDTVENAKMEVALWFKPEEFVTYTEKAKAWVYE 126          
BLAST of CV712850 vs. ExPASy Swiss-Prot
Match: NDKB_MERPA (Nucleoside diphosphate kinase B (Fragments) OS=Merluccius paradoxus GN=nme2 PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 3.031e-13
Identity = 34/61 (55.74%), Postives = 43/61 (70.49%), Query Frame = 2
Query:    2 GATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF-PDGPINWQSSLHPWIYE 181
            G TNPA S PG+IRGD  I  GRNIIHGSD+VE+A+ E+ALWF P+  + +      W+YE
Sbjct:   66 GETNPADSKPGSIRGDFCINIGRNIIHGSDTVENAKMEVALWFKPEEFVTYTEKAKAWVYE 126          
BLAST of CV712850 vs. ExPASy Swiss-Prot
Match: NDKB_MERME (Nucleoside diphosphate kinase B (Fragments) OS=Merluccius merluccius GN=nme2 PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 3.031e-13
Identity = 34/61 (55.74%), Postives = 43/61 (70.49%), Query Frame = 2
Query:    2 GATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF-PDGPINWQSSLHPWIYE 181
            G TNPA S PG+IRGD  I  GRNIIHGSD+VE+A+ E+ALWF P+  + +      W+YE
Sbjct:   66 GETNPADSKPGSIRGDFCINIGRNIIHGSDTVENAKMEVALWFKPEEFVTYTEKAKAWVYE 126          
BLAST of CV712850 vs. ExPASy Swiss-Prot
Match: NDKB_MERCP (Nucleoside diphosphate kinase B (Fragments) OS=Merluccius capensis GN=nme2 PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 3.031e-13
Identity = 34/61 (55.74%), Postives = 43/61 (70.49%), Query Frame = 2
Query:    2 GATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF-PDGPINWQSSLHPWIYE 181
            G TNPA S PG+IRGD  I  GRNIIHGSD+VE+A+ E+ALWF P+  + +      W+YE
Sbjct:   66 GETNPADSKPGSIRGDFCINIGRNIIHGSDTVENAKMEVALWFKPEEFVTYTEKAKAWVYE 126          
BLAST of CV712850 vs. ExPASy Swiss-Prot
Match: NDK_BACSK (Nucleoside diphosphate kinase OS=Bacillus clausii (strain KSM-K16) GN=ndk PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 5.170e-13
Identity = 32/59 (54.24%), Postives = 47/59 (79.66%), Query Frame = 2
Query:    2 GATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPIN-WQSSLHPWI 175
            GATNP+++APGTIRGDLA+  G N++HGSDS ESA++EIA++F +  +N +Q   + W+
Sbjct:   89 GATNPSEAAPGTIRGDLAVNVGMNVVHGSDSPESAEREIAIFFKEEELNDYQKDSNKWV 147          
BLAST of CV712850 vs. ExPASy Swiss-Prot
Match: NDKC_DICDI (Nucleoside diphosphate kinase, cytosolic OS=Dictyostelium discoideum GN=ndkC-1 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 5.170e-13
Identity = 35/60 (58.33%), Postives = 42/60 (70.00%), Query Frame = 2
Query:    2 GATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPINWQSSLHPWIYE 181
            G TNP  SAPG+IRGD  +  GRNIIHGSDSVESA +EIALWF    +  +   +P +YE
Sbjct:   96 GVTNPLASAPGSIRGDFGVDVGRNIIHGSDSVESANREIALWFKPEELLTEVKPNPNLYE 155          
The following BLAST results are available for this feature:
BLAST of CV712850 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 153
Match NameE-valueIdentityDescription
NDK_DESAP1.777e-1359.02Nucleoside diphosphate kinase OS=Desulforudis auda... [more]
NDK3_ARATH2.321e-1356.67Nucleoside diphosphate kinase III, chloroplastic/m... [more]
NDK_TRIEI3.031e-1355.74Nucleoside diphosphate kinase OS=Trichodesmium ery... [more]
NDKB_MERSE3.031e-1355.74Nucleoside diphosphate kinase B (Fragments) OS=Mer... [more]
NDKB_MERPO3.031e-1355.74Nucleoside diphosphate kinase B (Fragments) OS=Mer... [more]
NDKB_MERPA3.031e-1355.74Nucleoside diphosphate kinase B (Fragments) OS=Mer... [more]
NDKB_MERME3.031e-1355.74Nucleoside diphosphate kinase B (Fragments) OS=Mer... [more]
NDKB_MERCP3.031e-1355.74Nucleoside diphosphate kinase B (Fragments) OS=Mer... [more]
NDK_BACSK5.170e-1354.24Nucleoside diphosphate kinase OS=Bacillus clausii ... [more]
NDKC_DICDI5.170e-1358.33Nucleoside diphosphate kinase, cytosolic OS=Dictyo... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001P18_r Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001P18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712850 ID=CV712850; Name=CV712850; organism=Citrus sinensis; type=EST; length=434bp
TGGAGCCACCAACCCTGCGCAGTCTGCTCCTGGAACCATCCGTGGTGATT
TGGCTATCGTGACGGGCAGGAATATTATCCATGGAAGTGACTCAGTTGAG
AGTGCCCAGAAAGAAATCGCCTTGTGGTTCCCTGATGGCCCTATTAACTG
GCAGAGCAGCCTTCACCCTTGGATCTATGAGTAAACTAATGTTTGGTTGA
GGAGCCTAATTGTTCCTGCAGTTAGACTTATCCCTATCCCTATCCCTATT
TCCTTATTTATGGTTACTCCTTGTTGGTGAACTGTTATGAAGTATTGAGT
TAAATTGAGACCAATCCTGGTTATGTTGGCTGCTTTTATTCTTGTGGTTG
CCATATACAATATTTAAGCTTTTTTGTTGACTGTATTATGAATTGAGTTT
GTTAATGGTTAGCACATGATGGTTGCAAAAAAAA
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