CV712849

Overview
NameCV712849
Unique NameCV712849
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length411
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV712849 vs. ExPASy Swiss-Prot
Match: NDK_SYNS3 (Nucleoside diphosphate kinase OS=Synechococcus sp. (strain CC9311) GN=ndk PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.511e-11
Identity = 34/61 (55.74%), Postives = 41/61 (67.21%), Query Frame = -1
Query:  232 GATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF-PDGPINWQSSLHPWIYE 411
            GAT P ++ PGTIRGDLAI  GRN+IHGSD+ E+A+ EI LWF P    +W  S   W  E
Sbjct:   91 GATKPLEAEPGTIRGDLAINIGRNVIHGSDAPETAEFEIGLWFNPSELSDWTPSDQTWRVE 151          
BLAST of CV712849 vs. ExPASy Swiss-Prot
Match: NDK_PROMP (Nucleoside diphosphate kinase OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=ndk PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.511e-11
Identity = 34/58 (58.62%), Postives = 41/58 (70.69%), Query Frame = -1
Query:  241 GATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI-NWQSSLHPW 411
            GAT P ++ PGTIRGDLAI  GRNIIHGSD  E+A+ EI LWF    I +W++S   W
Sbjct:   91 GATKPLEAEPGTIRGDLAIDIGRNIIHGSDGEETAKFEINLWFNQDEICDWETSDSEW 148          
BLAST of CV712849 vs. ExPASy Swiss-Prot
Match: NDK_GEOKA (Nucleoside diphosphate kinase OS=Geobacillus kaustophilus GN=ndk PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.511e-11
Identity = 28/60 (46.67%), Postives = 45/60 (75.00%), Query Frame = -1
Query:  235 GATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGP-INWQSSLHPWIY 411
            G TNP ++APGTIRGD  +  G+N+IHGSDS +SA++EI+L+F +   +++   ++ W+Y
Sbjct:   90 GKTNPQEAAPGTIRGDFGLTVGKNVIHGSDSPQSAKREISLFFKEEELVSYSKQINAWLY 149          
BLAST of CV712849 vs. ExPASy Swiss-Prot
Match: NDK_SYNPW (Nucleoside diphosphate kinase OS=Synechococcus sp. (strain WH7803) GN=ndk PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.973e-11
Identity = 33/58 (56.90%), Postives = 40/58 (68.97%), Query Frame = -1
Query:  241 GATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI-NWQSSLHPW 411
            GAT P ++ PGTIRGDLAI  GRN+IHGSD+ E+AQ EI LWF    + +W  S   W
Sbjct:   91 GATKPLEAEPGTIRGDLAINIGRNVIHGSDAPETAQFEIGLWFQASELSDWTPSDQGW 148          
BLAST of CV712849 vs. ExPASy Swiss-Prot
Match: NDKB_MACNO (Nucleoside diphosphate kinase B (Fragments) OS=Macruronus novaezelandiae GN=nme2 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.973e-11
Identity = 32/61 (52.46%), Postives = 41/61 (67.21%), Query Frame = -1
Query:  232 GATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFP-DGPINWQSSLHPWIYE 411
            G TNPA S PG+IRGD  I  GRNIIHGSD++E+A+ EI LWF  +  + +      W+YE
Sbjct:   66 GETNPADSKPGSIRGDFCINIGRNIIHGSDTLENAKMEIGLWFKGEEFVAYAEKAKAWVYE 126          
BLAST of CV712849 vs. ExPASy Swiss-Prot
Match: NDKB_MACMG (Nucleoside diphosphate kinase B (Fragments) OS=Macruronus magellanicus GN=nme2 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.973e-11
Identity = 32/61 (52.46%), Postives = 41/61 (67.21%), Query Frame = -1
Query:  232 GATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFP-DGPINWQSSLHPWIYE 411
            G TNPA S PG+IRGD  I  GRNIIHGSD++E+A+ EI LWF  +  + +      W+YE
Sbjct:   66 GETNPADSKPGSIRGDFCINIGRNIIHGSDTLENAKMEIGLWFKGEEFVAYAEKAKAWVYE 126          
BLAST of CV712849 vs. ExPASy Swiss-Prot
Match: NDK_THEPX (Nucleoside diphosphate kinase OS=Thermoanaerobacter sp. (strain X514) GN=ndk PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.577e-11
Identity = 31/45 (68.89%), Postives = 37/45 (82.22%), Query Frame = -1
Query:  277 GATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPD 411
            GAT   ++ PGTIRGD AI T  NIIHGSDS+ESA++EIALWFP+
Sbjct:   89 GATKVEEALPGTIRGDFAISTTFNIIHGSDSIESAKREIALWFPE 133          
BLAST of CV712849 vs. ExPASy Swiss-Prot
Match: NDK_THEP3 (Nucleoside diphosphate kinase OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN=ndk PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.577e-11
Identity = 31/45 (68.89%), Postives = 37/45 (82.22%), Query Frame = -1
Query:  277 GATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPD 411
            GAT   ++ PGTIRGD AI T  NIIHGSDS+ESA++EIALWFP+
Sbjct:   89 GATKVEEALPGTIRGDFAISTTFNIIHGSDSIESAKREIALWFPE 133          
BLAST of CV712849 vs. ExPASy Swiss-Prot
Match: NDK_PROM3 (Nucleoside diphosphate kinase OS=Prochlorococcus marinus (strain MIT 9303) GN=ndk PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.577e-11
Identity = 33/61 (54.10%), Postives = 40/61 (65.57%), Query Frame = -1
Query:  232 GATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPIN-WQSSLHPWIYE 411
            GAT P ++ PGTIRGDLA+  GRN+IHGSD  ++AQ EI LWF    +N W  S   W  E
Sbjct:   91 GATKPLEAEPGTIRGDLAVNIGRNVIHGSDGPDTAQFEINLWFSPEELNAWTPSDQSWRVE 151          
BLAST of CV712849 vs. ExPASy Swiss-Prot
Match: NDK_LISMH (Nucleoside diphosphate kinase OS=Listeria monocytogenes serotype 4a (strain HCC23) GN=ndk PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.577e-11
Identity = 32/59 (54.24%), Postives = 44/59 (74.58%), Query Frame = -1
Query:  238 GATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF-PDGPINWQSSLHPWI 411
            G TNP ++ PGTIR D AI T RN+IHGSDS+ESA++EI L+F P   +++Q ++  WI
Sbjct:   89 GKTNPLEADPGTIRADYAIHTNRNVIHGSDSLESAKREIQLFFAPQEILSYQKAIDTWI 147          
The following BLAST results are available for this feature:
BLAST of CV712849 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 164
Match NameE-valueIdentityDescription
NDK_SYNS31.511e-1155.74Nucleoside diphosphate kinase OS=Synechococcus sp.... [more]
NDK_PROMP1.511e-1158.62Nucleoside diphosphate kinase OS=Prochlorococcus m... [more]
NDK_GEOKA1.511e-1146.67Nucleoside diphosphate kinase OS=Geobacillus kaust... [more]
NDK_SYNPW1.973e-1156.90Nucleoside diphosphate kinase OS=Synechococcus sp.... [more]
NDKB_MACNO1.973e-1152.46Nucleoside diphosphate kinase B (Fragments) OS=Mac... [more]
NDKB_MACMG1.973e-1152.46Nucleoside diphosphate kinase B (Fragments) OS=Mac... [more]
NDK_THEPX2.577e-1168.89Nucleoside diphosphate kinase OS=Thermoanaerobacte... [more]
NDK_THEP32.577e-1168.89Nucleoside diphosphate kinase OS=Thermoanaerobacte... [more]
NDK_PROM32.577e-1154.10Nucleoside diphosphate kinase OS=Prochlorococcus m... [more]
NDK_LISMH2.577e-1154.24Nucleoside diphosphate kinase OS=Listeria monocyto... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS08_0001P18_f Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001P18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712849 ID=CV712849; Name=CV712849; organism=Citrus sinensis; type=EST; length=411bp
CTAACCATTAACAAACTCAATTCATAATACAGTCAACAAAAAAGCTTAAA
TATTGTATATGGCAACCACAAGAATAAAAGCAGCCAACATAACCAGGATT
GGTCTCAATTTAACTCAATACTTCATAACAGTTCACCAACAAGGAGTAAC
CATAAATAAGGAAATAGGGATAGGGATAGGGATAAGTCTAACTGCAGGAA
CAATTAGGCTCCTCAACCAAACATTAGTTTACTCATAGATCCAAGGGTGA
AGGCTGCTCTGCCAGTTAATAGGGCCATCAGGGAACCACAAGGCGATTTC
TTTCTGGGCACTCTCAACTGAGTCACTTCCATGGATAATATTCCTGCCCG
TCACGATAGCCAAATCACCACGGATGGTTCCAGGAGCAGACTGCGCAGGG
TTGGTGGCTCC
back to top