CV712849

Overview
NameCV712849
Unique NameCV712849
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length411
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV712849 vs. ExPASy Swiss-Prot
Match: NDK_MYCTU (Nucleoside diphosphate kinase OS=Mycobacterium tuberculosis GN=ndkA PE=1 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.741e-11
Identity = 31/45 (68.89%), Postives = 37/45 (82.22%), Query Frame = -1
Query:  280 GATNPAQSA-PGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFP 411
            G T+P Q+A PGTIRGD A+ T  N++HGSDS ESAQ+EIALWFP
Sbjct:   90 GGTDPVQAAAPGTIRGDFALETQFNLVHGSDSAESAQREIALWFP 134          
BLAST of CV712849 vs. ExPASy Swiss-Prot
Match: NDK_MYCTA (Nucleoside diphosphate kinase OS=Mycobacterium tuberculosis (strain ATCC 25177 / H37Ra) GN=ndk PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.741e-11
Identity = 31/45 (68.89%), Postives = 37/45 (82.22%), Query Frame = -1
Query:  280 GATNPAQSA-PGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFP 411
            G T+P Q+A PGTIRGD A+ T  N++HGSDS ESAQ+EIALWFP
Sbjct:   90 GGTDPVQAAAPGTIRGDFALETQFNLVHGSDSAESAQREIALWFP 134          
BLAST of CV712849 vs. ExPASy Swiss-Prot
Match: NDK_MYCBT (Nucleoside diphosphate kinase OS=Mycobacterium bovis (strain BCG / Tokyo 172 / ATCC 35737 / TMC 1019) GN=ndk PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.741e-11
Identity = 31/45 (68.89%), Postives = 37/45 (82.22%), Query Frame = -1
Query:  280 GATNPAQSA-PGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFP 411
            G T+P Q+A PGTIRGD A+ T  N++HGSDS ESAQ+EIALWFP
Sbjct:   90 GGTDPVQAAAPGTIRGDFALETQFNLVHGSDSAESAQREIALWFP 134          
BLAST of CV712849 vs. ExPASy Swiss-Prot
Match: NDK_MYCBP (Nucleoside diphosphate kinase OS=Mycobacterium bovis (strain BCG / Pasteur 1173P2) GN=ndk PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.741e-11
Identity = 31/45 (68.89%), Postives = 37/45 (82.22%), Query Frame = -1
Query:  280 GATNPAQSA-PGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFP 411
            G T+P Q+A PGTIRGD A+ T  N++HGSDS ESAQ+EIALWFP
Sbjct:   90 GGTDPVQAAAPGTIRGDFALETQFNLVHGSDSAESAQREIALWFP 134          
BLAST of CV712849 vs. ExPASy Swiss-Prot
Match: NDK_MYCBO (Nucleoside diphosphate kinase OS=Mycobacterium bovis GN=ndk PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.741e-11
Identity = 31/45 (68.89%), Postives = 37/45 (82.22%), Query Frame = -1
Query:  280 GATNPAQSA-PGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFP 411
            G T+P Q+A PGTIRGD A+ T  N++HGSDS ESAQ+EIALWFP
Sbjct:   90 GGTDPVQAAAPGTIRGDFALETQFNLVHGSDSAESAQREIALWFP 134          
BLAST of CV712849 vs. ExPASy Swiss-Prot
Match: NDK_LISMF (Nucleoside diphosphate kinase OS=Listeria monocytogenes serotype 4b (strain F2365) GN=ndk PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.741e-11
Identity = 32/59 (54.24%), Postives = 43/59 (72.88%), Query Frame = -1
Query:  238 GATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF-PDGPINWQSSLHPWI 411
            G TNP ++ PGTIR D AI T RN+IHGSDS ESA++EI L+F P   +++Q ++  WI
Sbjct:   89 GKTNPLEADPGTIRADYAIHTNRNVIHGSDSPESAKREIQLFFAPQEILSYQKAIDTWI 147          
BLAST of CV712849 vs. ExPASy Swiss-Prot
Match: NDK_CORU7 (Nucleoside diphosphate kinase OS=Corynebacterium urealyticum (strain ATCC 43042 / DSM 7109) GN=ndk PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.741e-11
Identity = 28/46 (60.87%), Postives = 38/46 (82.61%), Query Frame = -1
Query:  277 GATNPAQSA-PGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPD 411
            G T+P ++A PGTIRGD A+  G N++HGSDS ESA++EIA+WFP+
Sbjct:   90 GGTHPVEAATPGTIRGDFALTVGENVVHGSDSPESAEREIAIWFPN 135          
BLAST of CV712849 vs. ExPASy Swiss-Prot
Match: NDK_BACSU (Nucleoside diphosphate kinase OS=Bacillus subtilis GN=ndk PE=1 SV=3)

HSP 1 Score: 66.2402 bits (160), Expect = 5.741e-11
Identity = 30/60 (50.00%), Postives = 44/60 (73.33%), Query Frame = -1
Query:  235 GATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGP-INWQSSLHPWIY 411
            G TNP ++ PGTIRGD  +  G+NIIHGSDS+ESA++EI ++F +   +++Q  +  WIY
Sbjct:   90 GKTNPKEALPGTIRGDYGMFVGKNIIHGSDSLESAEREINIFFKNEELVSYQQLMAGWIY 149          
BLAST of CV712849 vs. ExPASy Swiss-Prot
Match: NDK_UNCMA (Nucleoside diphosphate kinase OS=Uncultured methanogenic archaeon RC-I GN=ndk PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.498e-11
Identity = 32/61 (52.46%), Postives = 42/61 (68.85%), Query Frame = -1
Query:  232 GATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPINWQSSL-HPWIYE 411
            G T P +SAPGTIRGD A+  GRN+IH SDS ESA++EI+L+F    I   + +   W+YE
Sbjct:   92 GKTKPIESAPGTIRGDFALDMGRNVIHASDSPESAKREISLYFKTSEIATYARIDEQWLYE 152          
BLAST of CV712849 vs. ExPASy Swiss-Prot
Match: NDK_PROM2 (Nucleoside diphosphate kinase OS=Prochlorococcus marinus (strain MIT 9215) GN=ndk PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.498e-11
Identity = 32/58 (55.17%), Postives = 41/58 (70.69%), Query Frame = -1
Query:  241 GATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI-NWQSSLHPW 411
            GAT P ++ PGTIRGDLAI  GRNIIHGSD  ++A+ EI LWF +  +  W++S   W
Sbjct:   91 GATKPLEAEPGTIRGDLAIDIGRNIIHGSDGEDTAKFEIDLWFNEEELCEWETSDAKW 148          
The following BLAST results are available for this feature:
BLAST of CV712849 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 164
Match NameE-valueIdentityDescription
NDK_MYCTU5.741e-1168.89Nucleoside diphosphate kinase OS=Mycobacterium tub... [more]
NDK_MYCTA5.741e-1168.89Nucleoside diphosphate kinase OS=Mycobacterium tub... [more]
NDK_MYCBT5.741e-1168.89Nucleoside diphosphate kinase OS=Mycobacterium bov... [more]
NDK_MYCBP5.741e-1168.89Nucleoside diphosphate kinase OS=Mycobacterium bov... [more]
NDK_MYCBO5.741e-1168.89Nucleoside diphosphate kinase OS=Mycobacterium bov... [more]
NDK_LISMF5.741e-1154.24Nucleoside diphosphate kinase OS=Listeria monocyto... [more]
NDK_CORU75.741e-1160.87Nucleoside diphosphate kinase OS=Corynebacterium u... [more]
NDK_BACSU5.741e-1150.00Nucleoside diphosphate kinase OS=Bacillus subtilis... [more]
NDK_UNCMA7.498e-1152.46Nucleoside diphosphate kinase OS=Uncultured methan... [more]
NDK_PROM27.498e-1155.17Nucleoside diphosphate kinase OS=Prochlorococcus m... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001P18_f Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001P18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712849 ID=CV712849; Name=CV712849; organism=Citrus sinensis; type=EST; length=411bp
CTAACCATTAACAAACTCAATTCATAATACAGTCAACAAAAAAGCTTAAA
TATTGTATATGGCAACCACAAGAATAAAAGCAGCCAACATAACCAGGATT
GGTCTCAATTTAACTCAATACTTCATAACAGTTCACCAACAAGGAGTAAC
CATAAATAAGGAAATAGGGATAGGGATAGGGATAAGTCTAACTGCAGGAA
CAATTAGGCTCCTCAACCAAACATTAGTTTACTCATAGATCCAAGGGTGA
AGGCTGCTCTGCCAGTTAATAGGGCCATCAGGGAACCACAAGGCGATTTC
TTTCTGGGCACTCTCAACTGAGTCACTTCCATGGATAATATTCCTGCCCG
TCACGATAGCCAAATCACCACGGATGGTTCCAGGAGCAGACTGCGCAGGG
TTGGTGGCTCC
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