CV712849

Overview
NameCV712849
Unique NameCV712849
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length411
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CV712849 vs. ExPASy Swiss-Prot
Match: NDK_BACHK (Nucleoside diphosphate kinase OS=Bacillus thuringiensis subsp. konkukian GN=ndk PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.792e-11
Identity = 28/60 (46.67%), Postives = 43/60 (71.67%), Query Frame = -1 
Query:  235 GATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGP-INWQSSLHPWIY 411
            G T P ++APGTIRGD  +   +NIIHGSDS+ESA++EI ++F +   +++   ++ WIY
Sbjct:   89 GKTRPHEAAPGTIRGDFGVTVAKNIIHGSDSLESAEREIGIFFKEEELVDYSKLMNEWIY 148
[Close]
BLAST of CV712849 vs. ExPASy Swiss-Prot
Match: NDK_BACCZ (Nucleoside diphosphate kinase OS=Bacillus cereus (strain ZK / E33L) GN=ndk PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.792e-11
Identity = 28/60 (46.67%), Postives = 43/60 (71.67%), Query Frame = -1 
Query:  235 GATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGP-INWQSSLHPWIY 411
            G T P ++APGTIRGD  +   +NIIHGSDS+ESA++EI ++F +   +++   ++ WIY
Sbjct:   89 GKTRPHEAAPGTIRGDFGVTVAKNIIHGSDSLESAEREIGIFFKEEELVDYSKLMNEWIY 148
[Close]
BLAST of CV712849 vs. ExPASy Swiss-Prot
Match: NDK_BACAN (Nucleoside diphosphate kinase OS=Bacillus anthracis GN=ndk PE=1 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.792e-11
Identity = 28/60 (46.67%), Postives = 43/60 (71.67%), Query Frame = -1 
Query:  235 GATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGP-INWQSSLHPWIY 411
            G T P ++APGTIRGD  +   +NIIHGSDS+ESA++EI ++F +   +++   ++ WIY
Sbjct:   89 GKTRPHEAAPGTIRGDFGVTVAKNIIHGSDSLESAEREIGIFFKEEELVDYSKLMNEWIY 148
[Close]
BLAST of CV712849 vs. ExPASy Swiss-Prot
Match: NDKM_HUMAN (Nucleoside diphosphate kinase, mitochondrial OS=Homo sapiens GN=NME4 PE=1 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.792e-11
Identity = 32/62 (51.61%), Postives = 42/62 (67.74%), Query Frame = -1 
Query:  244 GATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGP-INW-----QSSLHP 411
            G T+ A++APGTIRGD ++   RN+IH SDSVE AQ+EI LWF     ++W      SS+HP
Sbjct:  125 GHTDSAEAAPGTIRGDFSVHISRNVIHASDSVEGAQREIQLWFQSSELVSWADGGQHSSIHP 186
The following BLAST results are available for this feature:
BLAST of CV712849 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 164
Match NameE-valueIdentityDescription
NDK_BACHK9.792e-1146.67Nucleoside diphosphate kinase OS=Bacillus thuringi... [more]
NDK_BACCZ9.792e-1146.67Nucleoside diphosphate kinase OS=Bacillus cereus (... [more]
NDK_BACAN9.792e-1146.67Nucleoside diphosphate kinase OS=Bacillus anthraci... [more]
NDKM_HUMAN9.792e-1151.61Nucleoside diphosphate kinase, mitochondrial OS=Ho... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001P18_f Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001P18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712849 ID=CV712849; Name=CV712849; organism=Citrus sinensis; type=EST; length=411bp
CTAACCATTAACAAACTCAATTCATAATACAGTCAACAAAAAAGCTTAAA
TATTGTATATGGCAACCACAAGAATAAAAGCAGCCAACATAACCAGGATT
GGTCTCAATTTAACTCAATACTTCATAACAGTTCACCAACAAGGAGTAAC
CATAAATAAGGAAATAGGGATAGGGATAGGGATAAGTCTAACTGCAGGAA
CAATTAGGCTCCTCAACCAAACATTAGTTTACTCATAGATCCAAGGGTGA
AGGCTGCTCTGCCAGTTAATAGGGCCATCAGGGAACCACAAGGCGATTTC
TTTCTGGGCACTCTCAACTGAGTCACTTCCATGGATAATATTCCTGCCCG
TCACGATAGCCAAATCACCACGGATGGTTCCAGGAGCAGACTGCGCAGGG
TTGGTGGCTCC
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