CV712849

Overview
NameCV712849
Unique NameCV712849
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length411
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV712849 vs. ExPASy Swiss-Prot
Match: NDKA1_XENLA (Nucleoside diphosphate kinase A1 OS=Xenopus laevis PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.725e-15
Identity = 40/61 (65.57%), Postives = 44/61 (72.13%), Query Frame = -1
Query:  232 GATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGP-INWQSSLHPWIYE 411
            G TNPA S PGTIRGD  I  GRNIIHGSDSVESA KEIALWF D   +  +S  + W+YE
Sbjct:   93 GETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESANKEIALWFKDEELVENKSCAYEWVYE 153          
BLAST of CV712849 vs. ExPASy Swiss-Prot
Match: NDK3_HUMAN (Nucleoside diphosphate kinase 3 OS=Homo sapiens GN=NME3 PE=1 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 1.725e-15
Identity = 38/61 (62.30%), Postives = 46/61 (75.41%), Query Frame = -1
Query:  232 GATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF-PDGPINWQSSLHPWIYE 411
            GATNPA + PGTIRGD  I  G+N+IHGSDSVESA++EIALWF  D  + W+ S   W+YE
Sbjct:  109 GATNPADAPPGTIRGDFCIEVGKNLIHGSDSVESARREIALWFRADELLCWEDSAGHWLYE 169          
BLAST of CV712849 vs. ExPASy Swiss-Prot
Match: NDK_EMENI (Nucleoside diphosphate kinase OS=Emericella nidulans GN=swoH PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.252e-15
Identity = 40/61 (65.57%), Postives = 46/61 (75.41%), Query Frame = -1
Query:  232 GATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF-PDGPINWQSSLHPWIYE 411
            GATNP  SAPGTIRGD AI  GRN+ HGSDSVESA+KEI LWF P+   N++ +   WIYE
Sbjct:   91 GATNPLASAPGTIRGDFAIDVGRNVCHGSDSVESAKKEIGLWFTPEEIQNYKLNAFGWIYE 151          
BLAST of CV712849 vs. ExPASy Swiss-Prot
Match: NDK_GINCI (Nucleoside diphosphate kinase (Fragment) OS=Ginglymostoma cirratum PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.942e-15
Identity = 39/61 (63.93%), Postives = 45/61 (73.77%), Query Frame = -1
Query:  232 GATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFP-DGPINWQSSLHPWIYE 411
            G TNPA S PGTIRGD  I  GRNIIHGSDSVESA+KEI+LWF  +  + +Q+    WIYE
Sbjct:   91 GETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAKKEISLWFKREELVEYQNCAQDWIYE 151          
BLAST of CV712849 vs. ExPASy Swiss-Prot
Match: NDK_ASHGO (Nucleoside diphosphate kinase OS=Ashbya gossypii GN=NDK1 PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 5.018e-15
Identity = 38/61 (62.30%), Postives = 46/61 (75.41%), Query Frame = -1
Query:  232 GATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF-PDGPINWQSSLHPWIYE 411
            GATNP  SAPGTIRGD A+  GRN+ HGSDSVESAQ+EI LWF  +  ++W+ +   WIYE
Sbjct:   91 GATNPLNSAPGTIRGDFALDMGRNVCHGSDSVESAQREIDLWFKKEELVDWKLNQLSWIYE 151          
BLAST of CV712849 vs. ExPASy Swiss-Prot
Match: NDK_ACAM1 (Nucleoside diphosphate kinase OS=Acaryochloris marina (strain MBIC 11017) GN=ndk PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 5.018e-15
Identity = 38/61 (62.30%), Postives = 45/61 (73.77%), Query Frame = -1
Query:  232 GATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI-NWQSSLHPWIYE 411
            GATNP  S PGTIRGD  I  GRNIIHGSD+VE+AQ+EI+LWF    + +W  +L  WIYE
Sbjct:   89 GATNPLGSEPGTIRGDFGIDIGRNIIHGSDAVETAQREISLWFKSEELADWSPTLTSWIYE 149          
BLAST of CV712849 vs. ExPASy Swiss-Prot
Match: NDK8_HUMAN (Putative nucleoside diphosphate kinase OS=Homo sapiens GN=NME2P1 PE=5 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 5.018e-15
Identity = 38/61 (62.30%), Postives = 47/61 (77.05%), Query Frame = -1
Query:  232 GATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF-PDGPINWQSSLHPWIYE 411
            G TNPA S PGTIRGD  I  GRNIIHGSDSV+SA+KEI+L F P+  ++++S  H W+YE
Sbjct:   77 GETNPADSKPGTIRGDFCIQVGRNIIHGSDSVKSAEKEISLRFKPEELVDYKSCAHDWVYE 137          
BLAST of CV712849 vs. ExPASy Swiss-Prot
Match: NDK2_PEA (Nucleoside diphosphate kinase 2, chloroplastic OS=Pisum sativum GN=NDPK2 PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 5.018e-15
Identity = 36/61 (59.02%), Postives = 45/61 (73.77%), Query Frame = -1
Query:  232 GATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI-NWQSSLHPWIYE 411
            GAT+P Q+ PGTIRGD A+ TGRNIIHGSDS E+ ++EIALWF +G +  W     PW+ E
Sbjct:  170 GATDPLQAEPGTIRGDFAVQTGRNIIHGSDSPENGEREIALWFKEGELCEWTPVQEPWLRE 230          
BLAST of CV712849 vs. ExPASy Swiss-Prot
Match: NDK_NEUCR (Nucleoside diphosphate kinase OS=Neurospora crassa GN=ndk-1 PE=2 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 6.553e-15
Identity = 38/61 (62.30%), Postives = 44/61 (72.13%), Query Frame = -1
Query:  232 GATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPIN-WQSSLHPWIYE 411
            GATNP  SAPGTIRGD A+  GRN+ HGSDSVE+A+KEIALWF    +N W      WI+E
Sbjct:   92 GATNPLASAPGTIRGDFALDMGRNVCHGSDSVENAKKEIALWFKPEELNQWNHHSAAWIFE 152          
BLAST of CV712849 vs. ExPASy Swiss-Prot
Match: NDK_GLOVI (Nucleoside diphosphate kinase OS=Gloeobacter violaceus GN=ndk PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 6.553e-15
Identity = 38/61 (62.30%), Postives = 45/61 (73.77%), Query Frame = -1
Query:  232 GATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF-PDGPINWQSSLHPWIYE 411
            G TNP  S  GTIRGD  I  GRNIIHGSDS+ESA++EIALWF P   + WQ++L  W+YE
Sbjct:   89 GVTNPLNSPLGTIRGDYGIDIGRNIIHGSDSLESAEREIALWFAPAELLEWQATLGSWVYE 149          
The following BLAST results are available for this feature:
BLAST of CV712849 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 164
Match NameE-valueIdentityDescription
NDKA1_XENLA1.725e-1565.57Nucleoside diphosphate kinase A1 OS=Xenopus laevis... [more]
NDK3_HUMAN1.725e-1562.30Nucleoside diphosphate kinase 3 OS=Homo sapiens GN... [more]
NDK_EMENI2.252e-1565.57Nucleoside diphosphate kinase OS=Emericella nidula... [more]
NDK_GINCI2.942e-1563.93Nucleoside diphosphate kinase (Fragment) OS=Gingly... [more]
NDK_ASHGO5.018e-1562.30Nucleoside diphosphate kinase OS=Ashbya gossypii G... [more]
NDK_ACAM15.018e-1562.30Nucleoside diphosphate kinase OS=Acaryochloris mar... [more]
NDK8_HUMAN5.018e-1562.30Putative nucleoside diphosphate kinase OS=Homo sap... [more]
NDK2_PEA5.018e-1559.02Nucleoside diphosphate kinase 2, chloroplastic OS=... [more]
NDK_NEUCR6.553e-1562.30Nucleoside diphosphate kinase OS=Neurospora crassa... [more]
NDK_GLOVI6.553e-1562.30Nucleoside diphosphate kinase OS=Gloeobacter viola... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001P18_f Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001P18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712849 ID=CV712849; Name=CV712849; organism=Citrus sinensis; type=EST; length=411bp
CTAACCATTAACAAACTCAATTCATAATACAGTCAACAAAAAAGCTTAAA
TATTGTATATGGCAACCACAAGAATAAAAGCAGCCAACATAACCAGGATT
GGTCTCAATTTAACTCAATACTTCATAACAGTTCACCAACAAGGAGTAAC
CATAAATAAGGAAATAGGGATAGGGATAGGGATAAGTCTAACTGCAGGAA
CAATTAGGCTCCTCAACCAAACATTAGTTTACTCATAGATCCAAGGGTGA
AGGCTGCTCTGCCAGTTAATAGGGCCATCAGGGAACCACAAGGCGATTTC
TTTCTGGGCACTCTCAACTGAGTCACTTCCATGGATAATATTCCTGCCCG
TCACGATAGCCAAATCACCACGGATGGTTCCAGGAGCAGACTGCGCAGGG
TTGGTGGCTCC
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