CV712849

Overview
NameCV712849
Unique NameCV712849
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length411
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV712849 vs. ExPASy Swiss-Prot
Match: NDK3_MOUSE (Nucleoside diphosphate kinase 3 OS=Mus musculus GN=Nme3 PE=2 SV=3)

HSP 1 Score: 76.2554 bits (186), Expect = 5.548e-14
Identity = 34/61 (55.74%), Postives = 44/61 (72.13%), Query Frame = -1
Query:  232 GATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGP-INWQSSLHPWIYE 411
            GAT+P  + PGTIRGD  +  G+N+IHGSDSVESA +EIALWF +   + W+ S   W+YE
Sbjct:  109 GATDPGDAMPGTIRGDFCMEVGKNVIHGSDSVESAHREIALWFREAELLCWEDSAGHWLYE 169          
BLAST of CV712849 vs. ExPASy Swiss-Prot
Match: NDK_STAES (Nucleoside diphosphate kinase OS=Staphylococcus epidermidis (strain ATCC 12228) GN=ndk PE=3 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 7.245e-14
Identity = 34/61 (55.74%), Postives = 45/61 (73.77%), Query Frame = -1
Query:  232 GATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI-NWQSSLHPWIYE 411
            G+TNP+++APGTIRGD  +  GRNIIHGSDS ESAQ+E+ LWF    I +++     W+YE
Sbjct:   89 GSTNPSEAAPGTIRGDYGLNLGRNIIHGSDSTESAQREVKLWFTSSEIADYKEPREDWLYE 149          
BLAST of CV712849 vs. ExPASy Swiss-Prot
Match: NDK_STAEQ (Nucleoside diphosphate kinase OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=ndk PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.245e-14
Identity = 34/61 (55.74%), Postives = 45/61 (73.77%), Query Frame = -1
Query:  232 GATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI-NWQSSLHPWIYE 411
            G+TNP+++APGTIRGD  +  GRNIIHGSDS ESAQ+E+ LWF    I +++     W+YE
Sbjct:   89 GSTNPSEAAPGTIRGDYGLNLGRNIIHGSDSTESAQREVKLWFTSSEIADYKEPREDWLYE 149          
BLAST of CV712849 vs. ExPASy Swiss-Prot
Match: NDK_MICAN (Nucleoside diphosphate kinase OS=Microcystis aeruginosa (strain NIES-843) GN=ndk PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.245e-14
Identity = 32/61 (52.46%), Postives = 43/61 (70.49%), Query Frame = -1
Query:  232 GATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI-NWQSSLHPWIYE 411
            GATNP  + PGTIRGD  I  GRN+IHGSD  ++A+ E++LWF D  + NW  ++ PW+ E
Sbjct:   89 GATNPLNAEPGTIRGDFGISVGRNLIHGSDGPDTAKDEVSLWFSDAELANWTPAITPWVVE 149          
BLAST of CV712849 vs. ExPASy Swiss-Prot
Match: NDK_THEEB (Nucleoside diphosphate kinase OS=Thermosynechococcus elongatus (strain BP-1) GN=ndk PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 9.463e-14
Identity = 33/61 (54.10%), Postives = 44/61 (72.13%), Query Frame = -1
Query:  232 GATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGP-INWQSSLHPWIYE 411
            GATNP  + PGT+RGD A+  GRN+IHGSDS E+A++EI LWF     + W+ +L  W+YE
Sbjct:   89 GATNPLNAEPGTLRGDFAVDVGRNVIHGSDSPENAEREINLWFQTQELVPWEPALTSWVYE 149          
BLAST of CV712849 vs. ExPASy Swiss-Prot
Match: NDK_STAAW (Nucleoside diphosphate kinase OS=Staphylococcus aureus (strain MW2) GN=ndk PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 9.463e-14
Identity = 33/61 (54.10%), Postives = 48/61 (78.69%), Query Frame = -1
Query:  232 GATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI-NWQSSLHPWIYE 411
            G+TNP++++PG+IRGDL +  GRNIIHGSDS++SA++EI LWF +  I ++ S    W+YE
Sbjct:   89 GSTNPSEASPGSIRGDLGLTVGRNIIHGSDSLDSAEREINLWFNENEITSYASPRDAWLYE 149          
BLAST of CV712849 vs. ExPASy Swiss-Prot
Match: NDK_STAAS (Nucleoside diphosphate kinase OS=Staphylococcus aureus (strain MSSA476) GN=ndk PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 9.463e-14
Identity = 33/61 (54.10%), Postives = 48/61 (78.69%), Query Frame = -1
Query:  232 GATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI-NWQSSLHPWIYE 411
            G+TNP++++PG+IRGDL +  GRNIIHGSDS++SA++EI LWF +  I ++ S    W+YE
Sbjct:   89 GSTNPSEASPGSIRGDLGLTVGRNIIHGSDSLDSAEREINLWFNENEITSYASPRDAWLYE 149          
BLAST of CV712849 vs. ExPASy Swiss-Prot
Match: NDK_MACCJ (Nucleoside diphosphate kinase OS=Macrococcus caseolyticus (strain JCSC5402) GN=ndk PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 9.463e-14
Identity = 36/60 (60.00%), Postives = 43/60 (71.67%), Query Frame = -1
Query:  235 GATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI-NWQSSLHPWIY 411
            G TNPA+SAPGTIRGD  +  G+NIIHGSDSV SA KEIALWF +  I ++      W+Y
Sbjct:   89 GKTNPAESAPGTIRGDFGMTVGKNIIHGSDSVASADKEIALWFKEEEILSYDLVTSAWVY 148          
BLAST of CV712849 vs. ExPASy Swiss-Prot
Match: NDKM_DICDI (Nucleoside diphosphate kinase, mitochondrial OS=Dictyostelium discoideum GN=ndkM PE=1 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 9.463e-14
Identity = 39/54 (72.22%), Postives = 43/54 (79.63%), Query Frame = -1
Query:  253 GATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI-NWQSS 411
            GAT+P+QSAPGTIR DL I TGRNIIHGSDS ESA  EIALWF +  I NW S+
Sbjct:  160 GATDPSQSAPGTIRFDLCIETGRNIIHGSDSNESAAHEIALWFKEDEIANWVST 213          
BLAST of CV712849 vs. ExPASy Swiss-Prot
Match: NDK_SYNP2 (Nucleoside diphosphate kinase OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=ndk PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.236e-13
Identity = 32/61 (52.46%), Postives = 43/61 (70.49%), Query Frame = -1
Query:  232 GATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI-NWQSSLHPWIYE 411
            GATNP ++ PGTIRGD  +  GRN+IHGSD  ++A  EIALWF +  + NW+ +   W+YE
Sbjct:   89 GATNPLEAEPGTIRGDFGVDIGRNLIHGSDGPDTAASEIALWFSESELANWEPATKAWLYE 149          
The following BLAST results are available for this feature:
BLAST of CV712849 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 164
Match NameE-valueIdentityDescription
NDK3_MOUSE5.548e-1455.74Nucleoside diphosphate kinase 3 OS=Mus musculus GN... [more]
NDK_STAES7.245e-1455.74Nucleoside diphosphate kinase OS=Staphylococcus ep... [more]
NDK_STAEQ7.245e-1455.74Nucleoside diphosphate kinase OS=Staphylococcus ep... [more]
NDK_MICAN7.245e-1452.46Nucleoside diphosphate kinase OS=Microcystis aerug... [more]
NDK_THEEB9.463e-1454.10Nucleoside diphosphate kinase OS=Thermosynechococc... [more]
NDK_STAAW9.463e-1454.10Nucleoside diphosphate kinase OS=Staphylococcus au... [more]
NDK_STAAS9.463e-1454.10Nucleoside diphosphate kinase OS=Staphylococcus au... [more]
NDK_MACCJ9.463e-1460.00Nucleoside diphosphate kinase OS=Macrococcus caseo... [more]
NDKM_DICDI9.463e-1472.22Nucleoside diphosphate kinase, mitochondrial OS=Di... [more]
NDK_SYNP21.236e-1352.46Nucleoside diphosphate kinase OS=Synechococcus sp.... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001P18_f Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001P18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712849 ID=CV712849; Name=CV712849; organism=Citrus sinensis; type=EST; length=411bp
CTAACCATTAACAAACTCAATTCATAATACAGTCAACAAAAAAGCTTAAA
TATTGTATATGGCAACCACAAGAATAAAAGCAGCCAACATAACCAGGATT
GGTCTCAATTTAACTCAATACTTCATAACAGTTCACCAACAAGGAGTAAC
CATAAATAAGGAAATAGGGATAGGGATAGGGATAAGTCTAACTGCAGGAA
CAATTAGGCTCCTCAACCAAACATTAGTTTACTCATAGATCCAAGGGTGA
AGGCTGCTCTGCCAGTTAATAGGGCCATCAGGGAACCACAAGGCGATTTC
TTTCTGGGCACTCTCAACTGAGTCACTTCCATGGATAATATTCCTGCCCG
TCACGATAGCCAAATCACCACGGATGGTTCCAGGAGCAGACTGCGCAGGG
TTGGTGGCTCC
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