CV712847

Overview
NameCV712847
Unique NameCV712847
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length878
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV712847 vs. ExPASy Swiss-Prot
Match: ISPH_PROMT (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Prochlorococcus marinus (strain NATL2A) GN=ispH PE=3 SV=1)

HSP 1 Score: 60.8474 bits (146), Expect = 1.729e-15
Identity = 32/66 (48.48%), Postives = 47/66 (71.21%), Query Frame = 2
Query:  416 QERQDAMY*LVEEKIDLILLVGRWNSSTTSSLQKIAEDRGISSYWIDSEKRIG-PGNKIAHKLMHG 610
            +ERQ AM+ LV+E +DL++++G +NSS T+ LQ+IA  RGI S+ ID+ +RIG   N I H  + G
Sbjct:  292 EERQGAMFSLVDEPLDLMVVIGGFNSSNTTHLQEIAISRGIRSFHIDTPERIGEETNTITHMPLEG 357          

HSP 2 Score: 42.743 bits (99), Expect = 1.729e-15
Identity = 17/35 (48.57%), Postives = 28/35 (80.00%), Query Frame = 1
Query:  622 EKNWLPKGQITIGVTAGASIPDKAVENVLKKVFEI 726
            E+N+L  G I++G+T+GAS PD+ VE+V+ K+ +I
Sbjct:  363 EENFLQNGNISVGITSGASTPDRVVEDVIHKLMKI 397          
BLAST of CV712847 vs. ExPASy Swiss-Prot
Match: ISPH_PROM1 (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Prochlorococcus marinus (strain NATL1A) GN=ispH PE=3 SV=1)

HSP 1 Score: 60.8474 bits (146), Expect = 1.729e-15
Identity = 32/66 (48.48%), Postives = 47/66 (71.21%), Query Frame = 2
Query:  416 QERQDAMY*LVEEKIDLILLVGRWNSSTTSSLQKIAEDRGISSYWIDSEKRIG-PGNKIAHKLMHG 610
            +ERQ AM+ LV+E +DL++++G +NSS T+ LQ+IA  RGI S+ ID+ +RIG   N I H  + G
Sbjct:  292 EERQGAMFSLVDEPLDLMVVIGGFNSSNTTHLQEIAISRGIRSFHIDTPERIGEETNTITHMPLEG 357          

HSP 2 Score: 42.743 bits (99), Expect = 1.729e-15
Identity = 17/35 (48.57%), Postives = 28/35 (80.00%), Query Frame = 1
Query:  622 EKNWLPKGQITIGVTAGASIPDKAVENVLKKVFEI 726
            E+N+L  G I++G+T+GAS PD+ VE+V+ K+ +I
Sbjct:  363 EENFLQNGNISVGITSGASTPDRVVEDVIHKLMKI 397          
BLAST of CV712847 vs. ExPASy Swiss-Prot
Match: ISPH_PROM9 (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Prochlorococcus marinus (strain MIT 9312) GN=ispH PE=3 SV=1)

HSP 1 Score: 58.151 bits (139), Expect = 3.084e-14
Identity = 29/62 (46.77%), Postives = 46/62 (74.19%), Query Frame = 2
Query:  416 QERQDAMY*LVEEKIDLILLVGRWNSSTTSSLQKIAEDRGISSYWIDSEKRIG-PGNKIAHK 598
            +ERQDAM+ LV+E +D+++++G +NSS T+ LQ+IA  + I+S+ ID+ +RI    N I HK
Sbjct:  292 EERQDAMFSLVDEDLDILVVIGGFNSSNTTHLQEIAITKNITSFHIDTPERISVEENSILHK 353          

HSP 2 Score: 41.2022 bits (95), Expect = 3.084e-14
Identity = 16/32 (50.00%), Postives = 25/32 (78.12%), Query Frame = 1
Query:  622 EKNWLPKGQITIGVTAGASIPDKAVENVLKKV 717
            + N+LP G I +G+T+GAS PDK V +V++K+
Sbjct:  362 KNNFLPSGNINVGITSGASTPDKVVADVIEKL 393          
The following BLAST results are available for this feature:
BLAST of CV712847 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 33
Match NameE-valueIdentityDescription
ISPH_PROMT1.729e-1548.484-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_PROM11.729e-1548.484-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_PROM93.084e-1446.774-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001P17_f Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001P17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712847 ID=CV712847; Name=CV712847; organism=Citrus sinensis; type=EST; length=878bp
TGGCTTCTGGTATTTGAGCAATTTTTCATTGTTACAGGAAAATTAGTAGA
GAAGACCATGATGCGTAAATTTGGAGTTGAAAATGTCAATGAACACTTCA
TAAGCTTCAACACAATTTGTTATGCTGCACAAGTAATTTCTTCTTCTAAC
TCATGGCTTTTCCTTTTCAGATTTTTATAATTTTGTGTGTCATAGAACTT
CCTGTCCACTGCATGTCTTTTAACGATCTTTATAAAACCCAGAATTTTGA
ACCTCGATATGCCAAACCTAACAACATACTTGACCATTTGTTTTCAATGA
CCGAACTGCTCCGCCCGCAAGAGTGCAATACTCAGCCACTAGTTAAACAG
CTAGTTGTGCAACATTCAGTTGCGTTCAGTAAAATTTAAGCTAAAGATTT
TGGTTTCAAGTTTTGCAGGAGCGGCAAGATGCAATGTATTAGTTGGTTGA
GGAAAAGATCGATCTTATTTTGCTTGTTGGCAGGTGGAACTCGAGCACTA
CCTCAAGCCTTCAAAAGATTGCAGAAGACCGTGGAATCTCCTCATACTGG
ATCGACAGTGAGAAAAGAATAGGTCCCGGAAACAAAATAGCACATAAATT
AATGCATGGTGAGCTGGTGGAGAAAAAAATTGGCTGCCGAAAGGACAGAT
CACAATCGGTGTAACAGCCGGTGCCTCCATCCCAGATAAGGCAGTTGAAA
ATGTCCTTAAAAAGGTGTTCGAGATCGAGCGTGAAGAAGCCTTGNCATTG
GCGTAAACTGAGGTCCAAACGTACATATTATCAATAAATTTCAATGTGAT
TCTCAATTAGATATTGTAAAATTATAAACACAACCCTCTTCTGAGTCTTT
TCTTAGTGCCCATGTGATCTGAAATTTT
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