CV712832

Overview
NameCV712832
Unique NameCV712832
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length730
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CV712832 vs. ExPASy Swiss-Prot
Match: ASK7_ARATH (SKP1-like protein 7 OS=Arabidopsis thaliana GN=ASK7 PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.207e-23
Identity = 61/131 (46.56%), Postives = 77/131 (58.78%), Query Frame = 3 
Query:   30 SPKMIVLKSCDGESFEVEEAVALESTTIKHMIEDDCADNGIPLPNVTGKILAKVVEYCKKHVEVPTTQDXXXXXXXXXXXXXXXXEEDLKSWDTDFVKVDQATLFDLILAANYLNIKGLLDLTCQTVADMI 422
            S K I+LKS DG+ FE+EE  A +  TI HMIE +C DN IP+ NVT +IL  V+EYC KH                        +EDLK WD +F++ DQ T+F L+ AA  L+IK LL L  QTVADM+
Sbjct:    2 STKKIMLKSSDGKMFEIEEETARQCQTIAHMIEAECTDNVIPVSNVTSEILEMVIEYCNKH---------------HVDAANPCSDEDLKKWDKEFMEKDQYTIFHLMNAAYDLHIKSLLALAYQTVADMV 117
[Close]
BLAST of CV712832 vs. ExPASy Swiss-Prot
Match: ASK6_ARATH (SKP1-like protein 6 OS=Arabidopsis thaliana GN=ASK6 PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.287e-21
Identity = 54/97 (55.67%), Postives = 64/97 (65.98%), Query Frame = 3 
Query:  111 IKHMIEDDCADNGIPLPNVTGKILAKVVEYCKKHVEVPTTQDXXXXXXXXXXXXXXXXEEDLKSWDTDFV-KVDQATLFDLILAANYLNIKGLLDLT 398
            IK M EDDCADNGIPLPNVT KIL  V+EYCKKHV                       EEDLK WD +F+ K++Q+ LFD+++AANYLNI+ LLDLT
Sbjct:    3 IKGMAEDDCADNGIPLPNVTSKILLLVIEYCKKHV-------------------VESKEEDLKKWDAEFMKKMEQSILFDVMMAANYLNIQSLLDLT 80
The following BLAST results are available for this feature:
BLAST of CV712832 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
ASK7_ARATH1.207e-2346.56SKP1-like protein 7 OS=Arabidopsis thaliana GN=ASK... [more]
ASK6_ARATH3.287e-2155.67SKP1-like protein 6 OS=Arabidopsis thaliana GN=ASK... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001P09_r Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001P09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712832 ID=CV712832; Name=CV712832; organism=Citrus sinensis; type=EST; length=730bp
TTGTTTTCTTTTTTCTCGAAACGATGTCGTCTCCTAAGATGATCGTACTC
AAGAGCTGTGACGGCGAGTCTTTCGAGGTCGAGGAGGCTGTCGCGCTTGA
GTCGACGACCATCAAGCACATGATCGAGGACGACTGCGCCGATAACGGCA
TCCCGTTACCGAACGTGACGGGCAAGATCCTGGCGAAGGTGGTTGAGTAT
TGCAAGAAACACGTGGAGGTTCCTACGACCCAGGATAGCAACACCAGCGG
CGCCAACAGCAACGGTGCTGCCACTAACGGTGGTGAGGAGGATCTCAAAA
GCTGGGACACTGACTTCGTCAAAGTTGACCAGGCCACTCTCTTCGATCTC
ATCCTGGCTGCAAACTACCTGAACATCAAGGGGCTGCTGGACCTTACCTG
CCAGACTGTTGCTGACATGATCAAGGGAAAGACTCCGGAGGAGATTCGAA
AGACCTTTAACATCAAGAATGACTTCACTCCAGAGGAGGAAGAAGAGGTC
CGTAGGGAGAACCAGTGGGCTTTTGAGTGAAAGTTGTTTCAACAAAGACA
ATTTGTCATTATCATTGTCTTGCAATCTTGCTGTCTTTAACATGTAGATG
TAGTTTTTTAGGGCTTATCTTTTCCTTTCTCATTGTACTTTCGAACTTAT
TAGCTGTTTGAAATGTAAATAATAGTCGGTTCTGGTGGAACTGGTAGCAG
TTGGTCTGGGCCATCCTTTCCTGCTTGCTA
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