CV712830

Overview
NameCV712830
Unique NameCV712830
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length529
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV712830 vs. ExPASy Swiss-Prot
Match: PSB8_BOVIN (Proteasome subunit beta type-8 OS=Bos taurus GN=PSMB8 PE=1 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 5.123e-13
Identity = 34/74 (45.95%), Postives = 48/74 (64.86%), Query Frame = 2
Query:    2 FSVGSGSPYAYGVLDSGYKFDMSIXXXXXXXXXXIYHATFRDAASGGVASVYYVGPNGWKKLSGDDVGELHYHY 223
            FS GSG+ +AYGV+DSGY+ D+SI          I HAT RD+ SGGV ++Y++  +GW K+   DV +L + Y
Sbjct:  198 FSTGSGNSHAYGVMDSGYRPDLSIEEAYDLGRRAIVHATHRDSYSGGVVNMYHMKEDGWVKVESTDVSDLMHQY 271          
BLAST of CV712830 vs. ExPASy Swiss-Prot
Match: PSB11_HUMAN (Proteasome subunit beta type-11 OS=Homo sapiens GN=PSMB11 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 6.691e-13
Identity = 35/71 (49.30%), Postives = 45/71 (63.38%), Query Frame = 2
Query:    2 FSVGSGSPYAYGVLDSGYKFDMSIXXXXXXXXXXIYHATFRDAASGGVASVYYVGPNGWKKLSGDDVGELH 214
            FSVGSGSPYAYGVLD GY++DMS           + HAT RDA SGG   +++V  +GW+ +S  D   L+
Sbjct:  175 FSVGSGSPYAYGVLDRGYRYDMSTQEAYALARCAVAHATHRDAYSGGSVDLFHVRESGWEHVSRSDACVLY 245          
BLAST of CV712830 vs. ExPASy Swiss-Prot
Match: PSB11_MOUSE (Proteasome subunit beta type-11 OS=Mus musculus GN=Psmb11 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.141e-12
Identity = 35/71 (49.30%), Postives = 45/71 (63.38%), Query Frame = 2
Query:    2 FSVGSGSPYAYGVLDSGYKFDMSIXXXXXXXXXXIYHATFRDAASGGVASVYYVGPNGWKKLSGDDVGELH 214
            FSVGSGSPYAYGVLD GY +DM+I          + HAT RDA SGG   +++V  +GW+ +S  D   L+
Sbjct:  175 FSVGSGSPYAYGVLDRGYHYDMTIQEAYTLARCAVAHATHRDAYSGGSVDLFHVRESGWEYVSRSDACVLY 245          
BLAST of CV712830 vs. ExPASy Swiss-Prot
Match: PSB8_RAT (Proteasome subunit beta type-8 OS=Rattus norvegicus GN=Psmb8 PE=1 SV=3)

HSP 1 Score: 71.2478 bits (173), Expect = 3.321e-12
Identity = 34/78 (43.59%), Postives = 48/78 (61.54%), Query Frame = 2
Query:    2 FSVGSGSPYAYGVLDSGYKFDMSIXXXXXXXXXXIYHATFRDAASGGVASVYYVGPNGWKKLSGDDVGELHYHYYPVT 235
            FS GSG+ YAYGV+DSGY+ D+S           I +AT RD+ SGGV ++Y++  +GW K+   DV +L + Y   T
Sbjct:  198 FSTGSGNTYAYGVMDSGYRQDLSPEEAYDLARRAIVYATHRDSYSGGVVNMYHMKKDGWVKVESTDVSDLLHKYREAT 275          
BLAST of CV712830 vs. ExPASy Swiss-Prot
Match: PSB8_MOUSE (Proteasome subunit beta type-8 OS=Mus musculus GN=Psmb8 PE=1 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 3.321e-12
Identity = 34/74 (45.95%), Postives = 46/74 (62.16%), Query Frame = 2
Query:    2 FSVGSGSPYAYGVLDSGYKFDMSIXXXXXXXXXXIYHATFRDAASGGVASVYYVGPNGWKKLSGDDVGELHYHY 223
            FS GSG+ YAYGV+DSGY+ D+S           I +AT RD  SGGV ++Y++  +GW K+   DV +L Y Y
Sbjct:  198 FSTGSGNTYAYGVMDSGYRQDLSPEEAYDLGRRAIAYATHRDNYSGGVVNMYHMKEDGWVKVESSDVSDLLYKY 271          
BLAST of CV712830 vs. ExPASy Swiss-Prot
Match: PSB8_CANFA (Proteasome subunit beta type-8 OS=Canis familiaris GN=PSMB8 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.648e-11
Identity = 33/74 (44.59%), Postives = 46/74 (62.16%), Query Frame = 2
Query:    2 FSVGSGSPYAYGVLDSGYKFDMSIXXXXXXXXXXIYHATFRDAASGGVASVYYVGPNGWKKLSGDDVGELHYHY 223
            FS GSGS YAYGV+DSGY+  +S           I +AT RD+ SGG+ ++Y++  +GW K+   DV EL + Y
Sbjct:  198 FSTGSGSTYAYGVMDSGYQPSLSPEEAYELGRRAITYATHRDSYSGGIINMYHMKEDGWVKVESTDVNELLHQY 271          
BLAST of CV712830 vs. ExPASy Swiss-Prot
Match: PSB8_HUMAN (Proteasome subunit beta type-8 OS=Homo sapiens GN=PSMB8 PE=1 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 2.811e-11
Identity = 32/74 (43.24%), Postives = 47/74 (63.51%), Query Frame = 2
Query:    2 FSVGSGSPYAYGVLDSGYKFDMSIXXXXXXXXXXIYHATFRDAASGGVASVYYVGPNGWKKLSGDDVGELHYHY 223
            FS GSG+ YAYGV+DSGY+ ++S           I +AT RD+ SGGV ++Y++  +GW K+   DV +L + Y
Sbjct:  198 FSTGSGNTYAYGVMDSGYRPNLSPEEAYDLGRRAIAYATHRDSYSGGVVNMYHMKEDGWVKVESTDVSDLLHQY 271          
The following BLAST results are available for this feature:
BLAST of CV712830 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
PSB8_BOVIN5.123e-1345.95Proteasome subunit beta type-8 OS=Bos taurus GN=PS... [more]
PSB11_HUMAN6.691e-1349.30Proteasome subunit beta type-11 OS=Homo sapiens GN... [more]
PSB11_MOUSE1.141e-1249.30Proteasome subunit beta type-11 OS=Mus musculus GN... [more]
PSB8_RAT3.321e-1243.59Proteasome subunit beta type-8 OS=Rattus norvegicu... [more]
PSB8_MOUSE3.321e-1245.95Proteasome subunit beta type-8 OS=Mus musculus GN=... [more]
PSB8_CANFA1.648e-1144.59Proteasome subunit beta type-8 OS=Canis familiaris... [more]
PSB8_HUMAN2.811e-1143.24Proteasome subunit beta type-8 OS=Homo sapiens GN=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001P07_r Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001P07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712830 ID=CV712830; Name=CV712830; organism=Citrus sinensis; type=EST; length=529bp
GTTCTCTGTGGGATCAGGTTCACCATATGCTTATGGTGTATTGGACAGCG
GGTACAAGTTTGACATGTCTATTGAAGAAGCTGCGGAGTTGGCTAGAAGA
GCTATTTATCATGCGACATTCAGAGATGCAGCCAGTGGTGGTGTTGCAAG
CGTTTATTATGTGGGACCAAATGGATGGAAGAAGCTGTCTGGTGATGATG
TTGGAGAGCTTCACTACCATTATTATCCAGTCACACCCAGTACAGTGGAG
CAAGAAATGGCTGAAGTCGCAGGGGCATAATTGAGTCTTGCTCAATTTGG
ACCAGGTTTGAGATATTCCTCATATTCACAGATCCAGTGGAGGACTTTAC
GGATATGCTTCTGAACTTTGTCAATGTACCTTGGGTTGATCCCAGAGATG
ACTCGTGAATTCAACCTAGTTAAGTTGATGCTTTAAGAACCCTGCATTTT
CTTTTGGTATTTTCATTATGACAAGTACAGTTCTATTTTCTATTAAGCAG
TTTGTTATAGTAATTTAGTTCCTGAGATT
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