CV712816

Overview
NameCV712816
Unique NameCV712816
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length749
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV712816 vs. ExPASy Swiss-Prot
Match: UCP1_DICGR (Mitochondrial brown fat uncoupling protein 1 OS=Dicrostonyx groenlandicus GN=UCP1 PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.078e-22
Identity = 80/256 (31.25%), Postives = 126/256 (49.22%), Query Frame = 1
Query:    1 PIDMIKVRIQL---GQGSA--------GTVTKTMLKNEGFGAFYKGLSAGLLRQATYTTARLGSFRILTNKAIEANDGKPLPLYQKALCGLTAGAIGASVGSPADLALIRMQADATLPAAQRRNYTNAFQALYRIVAD-EGVLALWKGAGPTVVRAMALNMGMLASYD-QSVEFFRDACGLSELPTVIGASTVSGFFASACSLPFDYVKTQIQKMQPDAQGKYPYTGSMDCAMKTLKAGGPFKFYTGFPVYCVRIA 729
            P+D  KVR+Q+   GQ S+        GT+T T+ K EG+   Y GL AG+ RQ ++ + R+G +  +  +   +    P  L  +   GL  G +   +G P ++  +R+QA + L   + R YT  + A YRI+A  E    LWKG  P ++R + +N   L +YD        +     ++P  + ++ V+GF  +  + P D VKT+     P   G+YP   S  CAM  L   GP  F+ GF    +R+A
Sbjct:   33 PLDTAKVRLQIQGEGQTSSTIRYKGVLGTIT-TLAKTEGWPKLYSGLPAGIQRQISFASLRIGLYDTV-QEYFSSGKETPPTLGNRISAGLMTGGVAVFIGQPTEVVKVRLQAQSHLHGIKPR-YTGTYNA-YRIIATTESFSTLWKGTTPNLMRNVIINRTELVTYDLMKGALVNNQILADDVPCHLLSALVAGFCTTFLASPADVVKTRFINSLP---GQYPSVPS--CAMTMLTKEGPTAFFKGFVPSFLRLA 279          
BLAST of CV712816 vs. ExPASy Swiss-Prot
Match: UCP2_RAT (Mitochondrial uncoupling protein 2 OS=Rattus norvegicus GN=Ucp2 PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.407e-22
Identity = 78/250 (31.20%), Postives = 116/250 (46.40%), Query Frame = 1
Query:    1 PIDMIKVRIQL---GQGSAGTVTK-----------TMLKNEGFGAFYKGLSAGLLRQATYTTARLGSFRILTNKAIEANDGKPLPLYQKALCGLTAGAIGASVGSPADLALIRMQADATLPAAQRRNYTNAFQALYRIVADEGVLALWKGAGPTVVRAMALNMGMLASYDQSVEFFRDACGLS-ELPTVIGASTVSGFFASACSLPFDYVKTQIQKMQPDAQGKYPYTGSMDCAMKTLKAGGPFKFYTGF 705
            P+D  KVR+Q+    QG A T              TM++ EG  + Y GL AGL RQ ++ + R+G +  +  K       +   +  + L G T GA+  +V  P D+  +R QA A   A   R Y +  +A   I  +EG+  LWKG  P V R   +N   L +YD   +    A  ++ +LP    ++  +GF  +  + P D VKT+       A G+Y   G   CA+  L+  GP  FY GF
Sbjct:   33 PLDTAKVRLQIQGESQGLARTAASAQYRGVLGTILTMVRTEGPRSLYNGLVAGLQRQMSFASVRIGLYDSV--KQFYTKGSEHAGIGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQAR--AGGGRRYQSTVEAYKTIAREEGIRGLWKGTSPNVARNAIVNCTELVTYDLIKDTLLKANLMTDDLPCHFTSAFGAGFCTTVIASPVDVVKTRYMN---SALGQYHSAG--HCALTMLRKEGPRAFYKGF 273          
BLAST of CV712816 vs. ExPASy Swiss-Prot
Match: UCP1_PHOSU (Mitochondrial brown fat uncoupling protein 1 OS=Phodopus sungorus GN=UCP1 PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.407e-22
Identity = 79/256 (30.86%), Postives = 125/256 (48.83%), Query Frame = 1
Query:    1 PIDMIKVRIQL---GQGSA--------GTVTKTMLKNEGFGAFYKGLSAGLLRQATYTTARLGSFRILTNKAIEANDGKPLPLYQKALCGLTAGAIGASVGSPADLALIRMQADATLPAAQRRNYTNAFQALYRIVAD-EGVLALWKGAGPTVVRAMALNMGMLASYD-QSVEFFRDACGLSELPTVIGASTVSGFFASACSLPFDYVKTQIQKMQPDAQGKYPYTGSMDCAMKTLKAGGPFKFYTGFPVYCVRIA 729
            P+D  KVR+Q+   GQ S+        GT+T T+ K EG    Y GL AG+ RQ ++ + R+G +  +  +   +    P  L  +   GL  G +   +G P ++  +R+QA + L   + R YT  + A YRI+A  E +  LWKG  P ++R + +N   L +YD        +     ++P  + ++ V+GF  +  + P D VKT+     P   G+YP   S  CAM      GP  F+ GF    +R+A
Sbjct:   33 PLDTAKVRLQIQGEGQTSSTIRYKGVLGTIT-TLAKTEGLPKLYSGLPAGIQRQISFASLRIGLYDTV-QEYFSSGKETPPTLVNRISAGLMTGGVAVFIGQPTEVVKVRLQAQSHLHGIKPR-YTGTYNA-YRIIATTESLSTLWKGTTPNLLRNVIINCTELVTYDLMKGALVNNQILADDVPCHLLSALVAGFCTTFLASPADVVKTRFINSLP---GQYPSVPS--CAMTMFTKEGPTAFFKGFVPSFLRLA 279          
BLAST of CV712816 vs. ExPASy Swiss-Prot
Match: UCP1_SUNMU (Mitochondrial brown fat uncoupling protein 1 OS=Suncus murinus GN=UCP1 PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.838e-22
Identity = 77/247 (31.17%), Postives = 120/247 (48.58%), Query Frame = 1
Query:    1 PIDMIKVRIQLG-----------QGSAGTVTKTMLKNEGFGAFYKGLSAGLLRQATYTTARLGSFRILTNKAIEANDGKPLPLYQKALCGLTAGAIGASVGSPADLALIRMQADATLPAAQRRNYTNAFQALYRIVADEGVLALWKGAGPTVVRAMALNMGMLASYDQSVE-FFRDACGLSELPTVIGASTVSGFFASACSLPFDYVKTQIQKMQPDAQGKYPYTGSMDCAMKTLKAGGPFKFYTGF 705
            P+D  KVR+Q+            +G  GT+  T+ K EG    Y GL AG+ RQ ++ + R+G +  +  +   A+   P  L  K   GL  G +   +G P ++A +RMQA ++L   + R Y+  + A Y IV  EG L LWKG    + R + +N   L  YD   E   ++     ++P  + A+  +GF  +A + P D VKT+     P   G YP+    +CA+  L+  G   F+ GF
Sbjct:   34 PLDTAKVRLQVQGERPNAPGVKYKGVLGTIA-TVAKTEGPLKLYGGLPAGIQRQISFASLRIGLYDTV-QEYFNAHRKTPATLGNKISAGLMTGCVTVFIGQPTEVAKVRMQAQSSLHWLKPR-YSGTYNAYYVIVKTEGFLGLWKGTSLNLTRNVIINCTELVVYDVLKEALVKNNVLADDIPCHLLAALTAGFCTTALASPVDVVKTRFINSPP---GYYPHV--HNCALNMLQKEGLRAFFKGF 272          
BLAST of CV712816 vs. ExPASy Swiss-Prot
Match: UCP2_DANRE (Mitochondrial uncoupling protein 2 OS=Danio rerio GN=ucp2 PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.401e-22
Identity = 73/251 (29.08%), Postives = 120/251 (47.81%), Query Frame = 1
Query:    1 PIDMIKVRIQL-GQGSAGT--------------VTKTMLKNEGFGAFYKGLSAGLLRQATYTTARLGSFRILTNKAIEANDGKPLPLYQKALCGLTAGAIGASVGSPADLALIRMQADATLPAAQRRNYTNAFQALYRIVADEGVLALWKGAGPTVVRAMALNMGMLASYDQSVE-FFRDACGLSELPTVIGASTVSGFFASACSLPFDYVKTQIQKMQPDAQGKYPYTGSMDCAMKTLKAGGPFKFYTGF 705
            P+D  KVR+Q+ G+  A T                 TM++ EG  + Y GL AGL RQ ++ + R+G +  +     + +D   +    + + G T GA+  +V  P D+  +R QA  +  A++R  Y +   A   I  +EG   LWKG GP + R   +N   L +YD   +   + +    +LP    ++  +GF  +  + P D VKT+       AQG+  Y+ +++CA+  L   GP  F+ GF
Sbjct:   33 PLDTAKVRLQIQGENKASTNMGRGPVKYRGVFGTISTMVRVEGPRSLYSGLVAGLQRQMSFASVRIGLYDSVKQFYTKGSDHAGIG--SRLMAGCTTGAMAVAVAQPTDVLKVRFQAQVSAGASKR--YHSTMDAYRTIAKEEGFRGLWKGTGPNITRNAIVNCTELVTYDLIKDALLKSSLMTDDLPCHFTSAFGAGFCTTIIASPVDVVKTRYMN---SAQGQ--YSSALNCAVAMLTKKGPKAFFKGF 274          
BLAST of CV712816 vs. ExPASy Swiss-Prot
Match: UCP1_MESAU (Mitochondrial brown fat uncoupling protein 1 OS=Mesocricetus auratus GN=UCP1 PE=1 SV=3)

HSP 1 Score: 105.916 bits (263), Expect = 2.401e-22
Identity = 80/256 (31.25%), Postives = 124/256 (48.44%), Query Frame = 1
Query:    1 PIDMIKVRIQL---GQ--------GSAGTVTKTMLKNEGFGAFYKGLSAGLLRQATYTTARLGSFRILTNKAIEANDGKPLPLYQKALCGLTAGAIGASVGSPADLALIRMQADATLPAAQRRNYTNAFQALYRIVAD-EGVLALWKGAGPTVVRAMALNMGMLASYD-QSVEFFRDACGLSELPTVIGASTVSGFFASACSLPFDYVKTQIQKMQPDAQGKYPYTGSMDCAMKTLKAGGPFKFYTGFPVYCVRIA 729
            P+D  KVR+Q+   GQ        G  GT+T T+ K EG    Y GL AG+ RQ ++ + R+G +  +  +   +    P  L  +   GL  G +   +G P ++  +R+QA + L   + R YT  + A YRI+A  E    LWKG  P ++R + +N   L +YD        +     ++P  + ++ V+GF  +  + P D VKT+     P   G+YP   S  CAM  L   GP  F+ GF    +R+A
Sbjct:   33 PLDTAKVRLQIQGEGQISSTIRYKGVLGTIT-TLAKTEGLPKLYSGLPAGIQRQISFASLRIGLYDTV-QEYFSSGKETPPTLGNRISAGLMTGGVAVFIGQPTEVVKVRLQAQSHLHGIKPR-YTGTYNA-YRIIATTESFSTLWKGTTPNLLRNVIINCVELVTYDLMKGALVNNQILADDVPCHLLSAFVAGFCTTFLASPADVVKTRFINSLP---GQYPSVPS--CAMTMLTKEGPTAFFKGFVPSFLRLA 279          
BLAST of CV712816 vs. ExPASy Swiss-Prot
Match: UCP3_BOVIN (Mitochondrial uncoupling protein 3 OS=Bos taurus GN=UCP3 PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 3.135e-22
Identity = 77/261 (29.50%), Postives = 116/261 (44.44%), Query Frame = 1
Query:    1 PIDMIKVRIQLG--------------QGSAGTVTKTMLKNEGFGAFYKGLSAGLLRQATYTTARLGSF----RILTNKAIEANDGKPLPLYQKALCGLTAGAIGASVGSPADLALIRMQADATLPAAQRRNYTNAFQALYRIVADEGVLALWKGAGPTVVRAMALNMGMLASYDQSVEFFRDACGLSE-LPTVIGASTVSGFFASACSLPFDYVKTQIQKMQPDAQGKYPYTGSMDCAMKTLKAGGPFKFYTGFPVYCVRI 726
            P+D  KVR+Q+               +G  GT+  TM++ EG  + Y GL AGL RQ ++ + R+G +    +  T K  + +      +  + L G T GA+  +   P D+  IR QA         R Y+    A   I  +EGV  LWKG  P + R   +N G + +YD   E   D   L++  P    ++  +GF A+  + P D VKT+     P       Y    DC +K +   GP  FY GF    +R+
Sbjct:   33 PLDTAKVRLQIQGENQAALAARSAQYRGVLGTIL-TMVRTEGPRSLYSGLVAGLQRQMSFASIRIGLYDSVKQFYTPKGSDHSS-----IITRILAGCTTGAMAVTCAQPTDVVKIRFQASMHTGLGGNRKYSGTMDAYRTIAREEGVRGLWKGILPNITRNAIVNCGEMVTYDIIKEKLLDYHLLTDNFPCHFVSAFGAGFCATLVASPVDVVKTRYMNSPPG-----QYHSPFDCMLKMVTQEGPTAFYKGFTPSFLRL 282          
BLAST of CV712816 vs. ExPASy Swiss-Prot
Match: UCP2_BOVIN (Mitochondrial uncoupling protein 2 OS=Bos taurus GN=UCP2 PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 3.135e-22
Identity = 77/251 (30.68%), Postives = 117/251 (46.61%), Query Frame = 1
Query:    1 PIDMIKVRIQLG---------------QGSAGTVTKTMLKNEGFGAFYKGLSAGLLRQATYTTARLGSFRILTNKAIEANDGKPLPLYQKALCGLTAGAIGASVGSPADLALIRMQADATLPAAQRRNYTNAFQALYRIVADEGVLALWKGAGPTVVRAMALNMGMLASYDQSVEFFRDACGLS-ELPTVIGASTVSGFFASACSLPFDYVKTQIQKMQPDAQGKYPYTGSMDCAMKTLKAGGPFKFYTGF 705
            P+D  KVR+Q+                +G  GT+  TM++ EG  + Y GL AGL RQ ++ + R+G +  +  K       +   +  + L G T GA+  +V  P D+  +R QA A   A +R  Y +  +A   I  +EG   LWKG  P V R   +N   L +YD   +    A  ++ +LP    ++  +GF  +  + P D VKT+       A G+Y   G   CA+  L+  GP  FY GF
Sbjct:   33 PLDTAKVRLQIQGERQGPMQAAASAQYRGVLGTIL-TMVRTEGPRSLYSGLVAGLQRQMSFASVRIGLYDSV--KQFYTKGSEHAGIGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQARAGAGRR--YQSTVEAYKTIAREEGFRGLWKGTSPNVARNAIVNCAELVTYDLIKDTLLKAHLMTDDLPCHFTSAFGAGFCTTVIASPVDVVKTRYMN---SALGQYSSAG--HCALTMLQKEGPQAFYKGF 273          
BLAST of CV712816 vs. ExPASy Swiss-Prot
Match: UCP1_BOVIN (Mitochondrial brown fat uncoupling protein 1 (Fragment) OS=Bos taurus GN=UCP1 PE=2 SV=2)

HSP 1 Score: 105.531 bits (262), Expect = 3.135e-22
Identity = 77/248 (31.05%), Postives = 114/248 (45.97%), Query Frame = 1
Query:    1 PIDMIKVRIQLG-----------QGSAGTVTKTMLKNEGFGAFYKGLSAGLLRQATYTTARLGSFRILTNKAIEANDGKPLPLYQKALCGLTAGAIGASVGSPADLALIRMQADATLPAAQRRNYTNAFQALYRIVAD-EGVLALWKGAGPTVVRAMALNMGMLASYDQSVE-FFRDACGLSELPTVIGASTVSGFFASACSLPFDYVKTQIQKMQPDAQGKYPYTGSMDCAMKTLKAGGPFKFYTGF 705
            P+D  KVR+Q+            +G  GT+  T+ K EG    Y GL AGL RQ +  + R+G +  +         GK   L  K   GL  G +   +G P ++  +R+QA + L   + R YT  + A YRI+A  EG+  LWKG  P +   + +N   L +YD   E   ++     ++P    ++ V+GF  +  S P D VKT+     P      P     +CAM  L   GP  F+ GF
Sbjct:   17 PLDTAKVRLQIQGECLISSAIRYKGVLGTII-TLAKTEGPVKLYSGLPAGLQRQISLASLRIGLYDTVQEFF---TTGKEASLGSKISAGLMTGGVAVFIGQPTEVVKVRLQAQSHLHGPKPR-YTGTYNA-YRIIATTEGLTGLWKGTSPNLTTNVIINCTELVTYDLMKEALVKNKLLADDVPCHFVSAVVAGFCTTVLSSPVDVVKTRFVNSSPGQNTSVP-----NCAMMMLTREGPSAFFKGF 253          
BLAST of CV712816 vs. ExPASy Swiss-Prot
Match: UCP3_HUMAN (Mitochondrial uncoupling protein 3 OS=Homo sapiens GN=UCP3 PE=1 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 4.095e-22
Identity = 78/262 (29.77%), Postives = 121/262 (46.18%), Query Frame = 1
Query:    1 PIDMIKVRIQLG--------------QGSAGTVTKTMLKNEGFGAFYKGLSAGLLRQATYTTARLGSF----RILTNKAIEANDGKPLPLYQKALCGLTAGAIGASVGSPADLALIRMQADATL-PAAQRRNYTNAFQALYRIVADEGVLALWKGAGPTVVRAMALNMGMLASYDQSVEFFRDACGLSE-LPTVIGASTVSGFFASACSLPFDYVKTQIQKMQPDAQGKYPYTGSMDCAMKTLKAGGPFKFYTGFPVYCVRI 726
            P+D  KVR+Q+               +G  GT+  TM++ EG  + Y GL AGL RQ ++ + R+G +    ++ T K  + +      L  + L G T GA+  +   P D+  +R QA   L P+   R Y+    A   I  +EGV  LWKG  P ++R   +N   + +YD   E   D   L++  P    ++  +GF A+  + P D VKT+     P       Y   +DC +K +   GP  FY GF    +R+
Sbjct:   33 PLDTAKVRLQIQGENQAVQTARLVQYRGVLGTIL-TMVRTEGPCSPYNGLVAGLQRQMSFASIRIGLYDSVKQVYTPKGADNSS-----LTTRILAGCTTGAMAVTCAQPTDVVKVRFQASIHLGPSRSDRKYSGTMDAYRTIAREEGVRGLWKGTLPNIMRNAIVNCAEVVTYDILKEKLLDYHLLTDNFPCHFVSAFGAGFCATVVASPVDVVKTRYMNSPPG-----QYFSPLDCMIKMVAQEGPTAFYKGFTPSFLRL 283          
The following BLAST results are available for this feature:
BLAST of CV712816 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 93
Match NameE-valueIdentityDescription
UCP1_DICGR1.078e-2231.25Mitochondrial brown fat uncoupling protein 1 OS=Di... [more]
UCP2_RAT1.407e-2231.20Mitochondrial uncoupling protein 2 OS=Rattus norve... [more]
UCP1_PHOSU1.407e-2230.86Mitochondrial brown fat uncoupling protein 1 OS=Ph... [more]
UCP1_SUNMU1.838e-2231.17Mitochondrial brown fat uncoupling protein 1 OS=Su... [more]
UCP2_DANRE2.401e-2229.08Mitochondrial uncoupling protein 2 OS=Danio rerio ... [more]
UCP1_MESAU2.401e-2231.25Mitochondrial brown fat uncoupling protein 1 OS=Me... [more]
UCP3_BOVIN3.135e-2229.50Mitochondrial uncoupling protein 3 OS=Bos taurus G... [more]
UCP2_BOVIN3.135e-2230.68Mitochondrial uncoupling protein 2 OS=Bos taurus G... [more]
UCP1_BOVIN3.135e-2231.05Mitochondrial brown fat uncoupling protein 1 (Frag... [more]
UCP3_HUMAN4.095e-2229.77Mitochondrial uncoupling protein 3 OS=Homo sapiens... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001O23_r Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001O23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712816 ID=CV712816; Name=CV712816; organism=Citrus sinensis; type=EST; length=749bp
CCCATCGATATGATCAAGGTGAGAATTCAGCTGGGCCAGGGATCCGCCGG
TACTGTGACAAAGACTATGCTTAAGAATGAGGGTTTTGGTGCCTTTTACA
AGGGGTTGTCTGCTGGACTGCTCAGGCAAGCTACATATACTACTGCTCGT
CTTGGATCATTTAGGATCTTGACAAACAAAGCAATTGAAGCCAATGACGG
GAAGCCTCTTCCATTGTATCAGAAAGCCTTGTGTGGGCTAACTGCTGGTG
CTATTGGAGCTTCTGTTGGTAGTCCAGCAGATTTGGCACTTATCCGTATG
CAGGCTGATGCCACACTACCTGCTGCTCAACGCCGCAATTACACTAATGC
CTTCCAAGCTCTTTATCGTATTGTTGCAGATGAAGGGGTCTTAGCACTTT
GGAAAGGTGCAGGTCCTACTGTTGTGAGAGCTATGGCATTGAACATGGGC
ATGCTTGCCTCCTACGATCAAAGTGTTGAGTTTTTCAGAGATGCGTGTGG
CTTGTCTGAACTTCCTACAGTAATCGGGGCGAGTACAGTGTCAGGGTTCT
TTGCTTCAGCTTGCAGTTTACCCTTTGATTATGTCAAAACACAAATTCAG
AAAATGCAACCAGATGCTCAAGGAAAGTATCCATACACAGGCTCTATGGA
CTGTGCCATGAAAACCCTCAAGGCTGGTGGACCATTCAAATTTTACACTG
GTTTCCCTGTGTACTGTGTTCGGATTGCTCCTCATGTCATGATGACTTG
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