CV712816

Overview
NameCV712816
Unique NameCV712816
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length749
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV712816 vs. ExPASy Swiss-Prot
Match: ODC2_YEAST (Mitochondrial 2-oxodicarboxylate carrier 2 OS=Saccharomyces cerevisiae GN=ODC2 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.245e-11
Identity = 49/177 (27.68%), Postives = 74/177 (41.81%), Query Frame = 1
Query:  193 NDGKPLPLYQKALCGLTAGAIGASVGSPADLALIRMQADATLPAA-----QRRNYTNAFQALYRIVADEGVLALWKGAGPTVVRAMALNMGMLASYDQSVEFFRDACGLSEL--PTVIGASTVSGFFASACSLPFDYVKTQIQKMQPDAQGKYPYTGSMDCAMKTLKAGGPFKFYTG 702
            ++ KPLP   + + G  AG    +V  P D+   R Q + T P A     Q   Y      L +IV  EG   L++G    ++          A  DQ  + F++    +E      I A   +G   +A  +PF+ +K ++Q +      K  Y G MDC  KT+K  G    Y G
Sbjct:    5 SNAKPLPFIYQFISGAVAGISELTVMYPLDVVKTRFQLEVTTPTAAAVGKQVERYNGVIDCLKKIVKKEGFSRLYRGISSPMLMEAPKRATKFACNDQYQKIFKNLFNTNETTQKISIAAGASAGMTEAAVIVPFELIKIRMQDV------KSSYLGPMDCLKKTIKNEGIMGLYKG 175          
BLAST of CV712816 vs. ExPASy Swiss-Prot
Match: S2543_HUMAN (Solute carrier family 25 member 43 OS=Homo sapiens GN=SLC25A43 PE=2 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 9.462e-11
Identity = 61/254 (24.02%), Postives = 106/254 (41.73%), Query Frame = 1
Query:    1 PIDMIKVRIQLG--QGSAGTVTKT---MLKNEGFGAFYKGLSAGLLRQATYTTARLGSFRILTNKAIEANDGKPLPLYQKALCGLTAGAIGASVGSPADLALIRMQADATLPAAQRRNYTNAFQALYRIVADEGVLALWKGAGPTVVRAMALNMGMLASYDQSVEFFRDACGLSELPTVIGASTVSGFFASACSLPFDYVKTQIQKMQP----DAQGKYPYTGSMDCAMKTLKAGGPFKFYTGFPVYCVRIAPH 735
            P+++  V  Q+G  +G A     T   + + EG  A +KG +   LR    +  +L ++R      +  +D   +  +   + G  AG +   V  P DL   R+     L  + R    +AF  +Y+    EG LAL++G   TVV A+  + G L  Y    + +        LP       ++       S PF+ VK ++Q   P           ++G++DC  + +KA G    + G     ++I P+
Sbjct:   32 PLELATVLAQVGVVRGHARGPWATGHRVWRAEGLRALWKGNAVACLRLFPCSAVQLAAYRKFV--VLFTDDLGHISQWSSIMAGSLAGMVSTIVTYPTDLIKTRLIMQNILEPSYR-GLLHAFSTIYQ---QEGFLALYRGVSLTVVGALPFSAGSLLVYMNLEKIWNGPRDQFSLPQNFANVCLAAAVTQTLSFPFETVKRKMQAQSPYLPHSGGVDVHFSGAVDCFRQIVKAQGVLGLWNGLTANLLKIVPY 279          
BLAST of CV712816 vs. ExPASy Swiss-Prot
Match: CMC_DICDI (Calcium-binding mitochondrial carrier protein OS=Dictyostelium discoideum GN=mcfO PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.462e-11
Identity = 65/259 (25.10%), Postives = 115/259 (44.40%), Query Frame = 1
Query:    1 PIDMIKVRIQLGQG---------SAGTVTKTMLKNEGFGAFYKGLSAGLLRQATYTTARLGSFRILTNKAIEANDGKP-LPLYQKALCGLTAGAIGASVGSPADLALIRMQADATLPAAQRRNYTNAFQALYRIVADEGVLALWKGAGPTVVRAMALNMGMLASYDQSVEFFRDACGLSELPTVIGASTVSGFFASACSLPFDYVKTQIQKMQPDAQGKYPYTGSMDCAMKTLKAGGPFKFYTGFPVYCVRIAPHVMMT 747
            PID++K R+Q  +          ++    K ++K EG    YKG+   ++  A     +L    +L +   + + G+   PL  + L G  AG     V +P ++  IR+Q  +T P            +   I+ + G+  L+KGAG  ++R +  +     +Y +      +  G      ++ A  V+G  A++   P D +KT++Q ++ +A G+  YTG  DC  K LK  GP   + G      R +P   +T
Sbjct:  458 PIDLVKTRMQNQRAVDPAKRLYVNSWDCFKKVVKFEGVRGLYKGILPQMVGVAPEKAIKLTVNDLLRDLFGDKSKGEIYFPL--EVLAGGFAGMSQVCVTNPLEIVKIRLQVQSTGPKV----------SAITIIKELGLAGLYKGAGACLLRDIPFSAIYFPTYAKMKTILANEDGKLGPMDLLLAGAVAGIPAASLVTPADVIKTRLQ-VKANA-GEQTYTGIRDCFQKILKEEGPRALFKGALARVFRSSPQFGVT 702          
The following BLAST results are available for this feature:
BLAST of CV712816 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 93
Match NameE-valueIdentityDescription
ODC2_YEAST7.245e-1127.68Mitochondrial 2-oxodicarboxylate carrier 2 OS=Sacc... [more]
S2543_HUMAN9.462e-1124.02Solute carrier family 25 member 43 OS=Homo sapiens... [more]
CMC_DICDI9.462e-1125.10Calcium-binding mitochondrial carrier protein OS=D... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001O23_r Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001O23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712816 ID=CV712816; Name=CV712816; organism=Citrus sinensis; type=EST; length=749bp
CCCATCGATATGATCAAGGTGAGAATTCAGCTGGGCCAGGGATCCGCCGG
TACTGTGACAAAGACTATGCTTAAGAATGAGGGTTTTGGTGCCTTTTACA
AGGGGTTGTCTGCTGGACTGCTCAGGCAAGCTACATATACTACTGCTCGT
CTTGGATCATTTAGGATCTTGACAAACAAAGCAATTGAAGCCAATGACGG
GAAGCCTCTTCCATTGTATCAGAAAGCCTTGTGTGGGCTAACTGCTGGTG
CTATTGGAGCTTCTGTTGGTAGTCCAGCAGATTTGGCACTTATCCGTATG
CAGGCTGATGCCACACTACCTGCTGCTCAACGCCGCAATTACACTAATGC
CTTCCAAGCTCTTTATCGTATTGTTGCAGATGAAGGGGTCTTAGCACTTT
GGAAAGGTGCAGGTCCTACTGTTGTGAGAGCTATGGCATTGAACATGGGC
ATGCTTGCCTCCTACGATCAAAGTGTTGAGTTTTTCAGAGATGCGTGTGG
CTTGTCTGAACTTCCTACAGTAATCGGGGCGAGTACAGTGTCAGGGTTCT
TTGCTTCAGCTTGCAGTTTACCCTTTGATTATGTCAAAACACAAATTCAG
AAAATGCAACCAGATGCTCAAGGAAAGTATCCATACACAGGCTCTATGGA
CTGTGCCATGAAAACCCTCAAGGCTGGTGGACCATTCAAATTTTACACTG
GTTTCCCTGTGTACTGTGTTCGGATTGCTCCTCATGTCATGATGACTTG
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