CV712709

Overview
NameCV712709
Unique NameCV712709
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length447
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV712709 vs. ExPASy Swiss-Prot
Match: RL27A_HUMAN (60S ribosomal protein L27a OS=Homo sapiens GN=RPL27A PE=1 SV=2)

HSP 1 Score: 106.301 bits (264), Expect = 6.052e-23
Identity = 52/96 (54.17%), Postives = 71/96 (73.96%), Query Frame = -1
Query:  169 GKVGMRYFHKLRNKFHCPIVNVDKLWSMVPQEVKAKASKDN---VPMIDVTQFGYFKVLGKGVLPENQPVVVKAKLVSKTAEKKIKEAGGAVVLTA 447
            GKVGM+++H  RN+  CP VN+DKLW++V ++ +  A+K+     P+IDV + GY+KVLGKG LP+ QPV+VKAK  S+ AE+KIK  GGA VL A
Sbjct:   54 GKVGMKHYHLKRNQSFCPTVNLDKLWTLVSEQTRVNAAKNKTGAAPIIDVVRSGYYKVLGKGKLPK-QPVIVKAKFFSRRAEEKIKSVGGACVLVA 148          
BLAST of CV712709 vs. ExPASy Swiss-Prot
Match: RL27A_PANTR (60S ribosomal protein L27a OS=Pan troglodytes GN=RPL27A PE=2 SV=3)

HSP 1 Score: 104.76 bits (260), Expect = 1.761e-22
Identity = 51/94 (54.26%), Postives = 70/94 (74.47%), Query Frame = -1
Query:  175 GKVGMRYFHKLRNKFHCPIVNVDKLWSMVPQEVKAKASKDN---VPMIDVTQFGYFKVLGKGVLPENQPVVVKAKLVSKTAEKKIKEAGGAVVL 447
            GKVGM+++H  RN+  CP VN+DKLW++V ++ +  A+K+     P+IDV + GY+KVLGKG LP+ QPV+VKAK  S+ AE+KIK  GGA VL
Sbjct:   54 GKVGMKHYHLKRNQSFCPTVNLDKLWTLVSEQTRVNAAKNKTGAAPIIDVVRSGYYKVLGKGKLPK-QPVIVKAKFFSRRAEEKIKSVGGACVL 146          
BLAST of CV712709 vs. ExPASy Swiss-Prot
Match: RL27A_MOUSE (60S ribosomal protein L27a OS=Mus musculus GN=Rpl27a PE=2 SV=4)

HSP 1 Score: 103.99 bits (258), Expect = 3.003e-22
Identity = 52/96 (54.17%), Postives = 70/96 (72.92%), Query Frame = -1
Query:  169 GKVGMRYFHKLRNKFHCPIVNVDKLWSMVPQEVKAKASKDN---VPMIDVTQFGYFKVLGKGVLPENQPVVVKAKLVSKTAEKKIKEAGGAVVLTA 447
            GKVGMR++H  RN+  CP VN+DK W++V ++ +  A+K+     P+IDV + GY+KVLGKG LP+ QPV+VKAK  S+ AE+KIK  GGA VL A
Sbjct:   54 GKVGMRHYHLKRNQSFCPTVNLDKPWTLVSEQTRVNAAKNKTGVAPIIDVVRSGYYKVLGKGKLPK-QPVIVKAKFFSRRAEEKIKGVGGACVLVA 148          
BLAST of CV712709 vs. ExPASy Swiss-Prot
Match: RL28_YEAST (60S ribosomal protein L28 OS=Saccharomyces cerevisiae GN=RPL28 PE=1 SV=2)

HSP 1 Score: 101.293 bits (251), Expect = 1.947e-21
Identity = 51/97 (52.58%), Postives = 69/97 (71.13%), Query Frame = -1
Query:  169 GKVGMRYFHKLRNKFHCPIVNVDKLWSMVPQEVK----AKASKDNVPMIDVTQFGYFKVLGKGVLPENQPVVVKAKLVSKTAEKKIKEAGGAVVLTA 447
            GKVGMRYFHK +  F  P++N+DKLW+++P++ +      ASK+  P+ID    GY K+LGKG +P N PV+VKA+ VSK AE+KI+ AGG V L A
Sbjct:   54 GKVGMRYFHKQQAHFWKPVLNLDKLWTLIPEDKRDQYLKSASKETAPVIDTLAAGYGKILGKGRIP-NVPVIVKARFVSKLAEEKIRAAGGVVELIA 149          
BLAST of CV712709 vs. ExPASy Swiss-Prot
Match: R27A2_ENTHI (60S ribosomal protein L27a-2/4 OS=Entamoeba histolytica GN=rpl27a-2 PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 2.543e-21
Identity = 51/97 (52.58%), Postives = 69/97 (71.13%), Query Frame = -1
Query:  169 GKVGMRYFHKLRNKFHCPIVNVDKLWSMVPQEVKAKASK----DNVPMIDVTQFGYFKVLGKGVLPENQPVVVKAKLVSKTAEKKIKEAGGAVVLTA 447
            GK GMR FH   NK++CP +NVD LWS+V ++V+A+       + VP+ID  + GYFKVLGKG LP+ QPV+V+A+  S+ A++KIK  GGA  LTA
Sbjct:   54 GKHGMRVFHLKANKYYCPSINVDSLWSLVGKDVQAQYKNAKVGEEVPVIDCVKHGYFKVLGKGFLPK-QPVIVRARYFSEKAQQKIKAVGGACELTA 149          
BLAST of CV712709 vs. ExPASy Swiss-Prot
Match: R27A1_ARATH (Putative 60S ribosomal protein L27a-1 OS=Arabidopsis thaliana GN=RPL27AA PE=5 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 2.543e-21
Identity = 56/90 (62.22%), Postives = 59/90 (65.56%), Query Frame = -1
Query:  172 VGMRYFHKLRNKFHCPIVNVDKLWSMVPQEVKAKASKDNVPMIDVTQFGYFKVLGKGVLPENQPVVVKAKLVSKTAEKKIKEAGGAVVLT 441
            VGMRYFHKLRNKF+C IVN+DKLWSMV                          LGKG LPEN+PVVVKAKLVS T EKKIKEAG AVVLT
Sbjct:   37 VGMRYFHKLRNKFYCQIVNLDKLWSMV--------------------------LGKGFLPENKPVVVKAKLVSNTDEKKIKEAGSAVVLT 100          
BLAST of CV712709 vs. ExPASy Swiss-Prot
Match: RL28_NEUCR (60S ribosomal protein L28 OS=Neurospora crassa GN=rpl-28 PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 3.321e-21
Identity = 51/97 (52.58%), Postives = 69/97 (71.13%), Query Frame = -1
Query:  169 GKVGMRYFHKLRNKFHCPIVNVDKLWSMVPQEVKAK----ASKDNVPMIDVTQFGYFKVLGKGVLPENQPVVVKAKLVSKTAEKKIKEAGGAVVLTA 447
            GKVGMR+FH LRN    PI+N++KLW++VP E + K    A+ +  P+ID+   GY K+LGKG LP+  P+VV+A+ VS  AE+KIKEAGG + L A
Sbjct:   54 GKVGMRHFHLLRNHQWAPILNIEKLWTLVPAEAREKYVSGAATETAPVIDLLSHGYAKLLGKGRLPQ-VPIVVRARYVSAEAERKIKEAGGVIELVA 149          
BLAST of CV712709 vs. ExPASy Swiss-Prot
Match: R27A1_ENTHI (60S ribosomal protein L27a-1 OS=Entamoeba histolytica GN=rpl27a-1 PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 3.321e-21
Identity = 50/97 (51.55%), Postives = 69/97 (71.13%), Query Frame = -1
Query:  169 GKVGMRYFHKLRNKFHCPIVNVDKLWSMVPQEVKAKASK----DNVPMIDVTQFGYFKVLGKGVLPENQPVVVKAKLVSKTAEKKIKEAGGAVVLTA 447
            GK GMR FH   NK++CP +NVD LWS+V ++++A+       + VP+ID  + GYFKVLGKG LP+ QPV+V+A+  S+ A++KIK  GGA  LTA
Sbjct:   54 GKHGMRVFHLKANKYYCPSINVDSLWSLVGKDIQAQYKNAKVGEEVPVIDCVKHGYFKVLGKGFLPK-QPVIVRARYFSEKAQQKIKAVGGACELTA 149          
BLAST of CV712709 vs. ExPASy Swiss-Prot
Match: RL27A_XENLA (60S ribosomal protein L27a OS=Xenopus laevis GN=rpl27a PE=2 SV=2)

HSP 1 Score: 100.138 bits (248), Expect = 4.337e-21
Identity = 50/96 (52.08%), Postives = 68/96 (70.83%), Query Frame = -1
Query:  169 GKVGMRYFHKLRNKFHCPIVNVDKLWSMVPQEVK---AKASKDNVPMIDVTQFGYFKVLGKGVLPENQPVVVKAKLVSKTAEKKIKEAGGAVVLTA 447
            GKVGMR++H  +N+  CP +N+DKLW++V ++ +   AK  +   P+ID    GY+KVLGKG LP+ QPV+VKAK  S+ AE+KIK  GGA VL A
Sbjct:   54 GKVGMRHYHLKKNQSFCPTINLDKLWTLVSEQTRLNHAKNLEGPAPIIDAVHAGYYKVLGKGKLPK-QPVIVKAKFFSRKAEEKIKSVGGACVLGA 148          
BLAST of CV712709 vs. ExPASy Swiss-Prot
Match: R27A3_ENTHI (60S ribosomal protein L27a-3 OS=Entamoeba histolytica GN=rpl27a-3 PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 7.398e-21
Identity = 51/97 (52.58%), Postives = 68/97 (70.10%), Query Frame = -1
Query:  169 GKVGMRYFHKLRNKFHCPIVNVDKLWSMVPQEV----KAKASKDNVPMIDVTQFGYFKVLGKGVLPENQPVVVKAKLVSKTAEKKIKEAGGAVVLTA 447
            GK GMR FH   NK++CP +NVD LWS+V ++V    K   + + VP+ID  + GYFKVLGKG LP+ QPV+V+A+  S+ A++KIK  GGA  LTA
Sbjct:   54 GKHGMRVFHLKANKYYCPSINVDSLWSLVGKDVQEQYKNAKTGEEVPVIDCVKHGYFKVLGKGFLPK-QPVIVRARYFSEKAQQKIKAVGGACELTA 149          
The following BLAST results are available for this feature:
BLAST of CV712709 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
RL27A_HUMAN6.052e-2354.1760S ribosomal protein L27a OS=Homo sapiens GN=RPL2... [more]
RL27A_PANTR1.761e-2254.2660S ribosomal protein L27a OS=Pan troglodytes GN=R... [more]
RL27A_MOUSE3.003e-2254.1760S ribosomal protein L27a OS=Mus musculus GN=Rpl2... [more]
RL28_YEAST1.947e-2152.5860S ribosomal protein L28 OS=Saccharomyces cerevis... [more]
R27A2_ENTHI2.543e-2152.5860S ribosomal protein L27a-2/4 OS=Entamoeba histol... [more]
R27A1_ARATH2.543e-2162.22Putative 60S ribosomal protein L27a-1 OS=Arabidops... [more]
RL28_NEUCR3.321e-2152.5860S ribosomal protein L28 OS=Neurospora crassa GN=... [more]
R27A1_ENTHI3.321e-2151.5560S ribosomal protein L27a-1 OS=Entamoeba histolyt... [more]
RL27A_XENLA4.337e-2152.0860S ribosomal protein L27a OS=Xenopus laevis GN=rp... [more]
R27A3_ENTHI7.398e-2152.5860S ribosomal protein L27a-3 OS=Entamoeba histolyt... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001M17_f Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001M17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712709 ID=CV712709; Name=CV712709; organism=Citrus sinensis; type=EST; length=447bp
GGGGGGGGGGCCCCCTTTTTTTTATCAATAACAGGGTCTCTATATAAAGC
AAAAAGTTTCAAATGATAACATAAACATCCAAAACTACATGTAAAAATAG
TCAAATACTCAAAAACTGAAATCCAAAATATCACAAAAAAATTTCTAAAA
ACAATAACAGTAAACCTAAGCAGTAAGCACAACAGCCCCACCAGCTTCTT
TAATTTTCTTCTCGGCTGTCTTGGAAACAAGCTTGGCCTTCACCACAACG
GGTTGGTTCTCAGGCAAAACGCCCTTACCCAAAACCTTAAAGTAGCCAAA
CTGAGTCACATCGATCATTGGCACATTGTCTTTGGAAGCCTTGGCTTTGA
CCTCCTGAGGTACCATCGACCAAAGCTTGTCGACGTTCACAATTGGGCAA
TGAAATTTATTACGCAGTTTGTGGAAGTACCTCATACCGACTTTGCC
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