CV712684

Overview
NameCV712684
Unique NameCV712684
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length746
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6698 contig Csv1_Contig6698:1455..2200. BLAST: Citrus Unigene V1 Contigs to TAIR9
Homology
BLAST of CV712684 vs. ExPASy Swiss-Prot
Match: NU4C_EUCGG (NAD(P)H-quinone oxidoreductase chain 4, chloroplastic OS=Eucalyptus globulus subsp. globulus GN=ndhD PE=3 SV=1)

HSP 1 Score: 410.994 bits (1055), Expect = 3.463e-114
Identity = 205/237 (86.50%), Postives = 219/237 (92.41%), Query Frame = 2
Query:    2 IRINMELLPHAHSIFSPWFMIVGTVQIIYAASTSPGQRNLKKRIAYSSVSHMGFIILGIGSITDTGLNGAVLQIISHGLISAALFFLAGTSYDRIRFAYLDEMGGLAIPIPKIFTLFSILSMASLALPGMSGFVAELIVFFGIITSQKFFLMPKIVITFVMAIGMILTPIYSLSMLRQMFYGYKLFNAPNSYFFDSGPRELFVLISILLPVIGIGIYPDFVLSLSADKAEAIISNFF 712
            +RINMELLPHAHSIFSPW +IVG +QIIYAA TSPGQRNLKKRIAYSSVSHMGFII+GIGSITDTGLNGA+LQIISHG I AALFFLAGTSYDRIR  YLDEMGG+AI +PKIFT+FSILSMASLALPGMSGF+AELIVFFGIITS ++ LMPKI+ITFVMAIGMILTPIY LSMLRQMFYGYKLFN PNSYF D GPRELFV ISILLP+I IGIYPDFVLSLS DK EAIISN+F
Sbjct:  263 VRINMELLPHAHSIFSPWLIIVGAIQIIYAALTSPGQRNLKKRIAYSSVSHMGFIIIGIGSITDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYLDEMGGMAIHLPKIFTIFSILSMASLALPGMSGFLAELIVFFGIITSHQYLLMPKILITFVMAIGMILTPIYLLSMLRQMFYGYKLFNVPNSYFLDFGPRELFVSISILLPIIAIGIYPDFVLSLSVDKVEAIISNYF 499          
BLAST of CV712684 vs. ExPASy Swiss-Prot
Match: NU4C_NANDO (NAD(P)H-quinone oxidoreductase chain 4, chloroplastic OS=Nandina domestica GN=ndhD PE=3 SV=1)

HSP 1 Score: 410.609 bits (1054), Expect = 4.523e-114
Identity = 205/237 (86.50%), Postives = 218/237 (91.98%), Query Frame = 2
Query:    2 IRINMELLPHAHSIFSPWFMIVGTVQIIYAASTSPGQRNLKKRIAYSSVSHMGFIILGIGSITDTGLNGAVLQIISHGLISAALFFLAGTSYDRIRFAYLDEMGGLAIPIPKIFTLFSILSMASLALPGMSGFVAELIVFFGIITSQKFFLMPKIVITFVMAIGMILTPIYSLSMLRQMFYGYKLFNAPNSYFFDSGPRELFVLISILLPVIGIGIYPDFVLSLSADKAEAIISNFF 712
            +RINMELLPHAHSIFSPW MIVGT+QIIYAASTS GQRNLKKRIAYSSVSHMGF ILGI SITDTGLNGA+LQ+ISHG I AALFFLAGTSYDRIR  YLDEMGG+AIP+PKIFTLFS  SMASLALPGMSGFVAEL+VFFGIITS+KFFLMPKI+ITFV AIGMILTPIYSLSMLRQ+FYGYK FN PNS+FFDSGPRELFV I I LPVIGIGIYPDFV SLS DK EAI+SN+F
Sbjct:  262 VRINMELLPHAHSIFSPWLMIVGTIQIIYAASTSLGQRNLKKRIAYSSVSHMGFTILGISSITDTGLNGAILQMISHGFIGAALFFLAGTSYDRIRLVYLDEMGGIAIPMPKIFTLFSSFSMASLALPGMSGFVAELVVFFGIITSEKFFLMPKILITFVTAIGMILTPIYSLSMLRQIFYGYKQFNVPNSHFFDSGPRELFVSICIFLPVIGIGIYPDFVFSLSVDKVEAILSNYF 498          
BLAST of CV712684 vs. ExPASy Swiss-Prot
Match: NU4C_MORIN (NAD(P)H-quinone oxidoreductase chain 4, chloroplastic OS=Morus indica GN=ndhD PE=3 SV=1)

HSP 1 Score: 409.838 bits (1052), Expect = 7.715e-114
Identity = 205/237 (86.50%), Postives = 218/237 (91.98%), Query Frame = 2
Query:    2 IRINMELLPHAHSIFSPWFMIVGTVQIIYAASTSPGQRNLKKRIAYSSVSHMGFIILGIGSITDTGLNGAVLQIISHGLISAALFFLAGTSYDRIRFAYLDEMGGLAIPIPKIFTLFSILSMASLALPGMSGFVAELIVFFGIITSQKFFLMPKIVITFVMAIGMILTPIYSLSMLRQMFYGYKLFNAPNSYFFDSGPRELFVLISILLPVIGIGIYPDFVLSLSADKAEAIISNFF 712
            +RINMELLPHAHSIFSPW MIVGT+QIIYAASTSPGQRNLKKRIAYSSVSHMGFII+G+GSI DTGLNGA+LQIISHG I AALFFLAGTSYDRIR  YLDEMGG+AI IPKIFT FSILSMASLALPGMSGFVAELI+FFGI+TSQK+ LM KI+ITFVMAIGMILTPIYSLSMLRQMFYGYKLF A NSYF DSGPRE FV ISILLPVI IGIYPDFV SLS DK EA++SN+F
Sbjct:  262 VRINMELLPHAHSIFSPWLMIVGTIQIIYAASTSPGQRNLKKRIAYSSVSHMGFIIIGLGSINDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYLDEMGGMAITIPKIFTTFSILSMASLALPGMSGFVAELILFFGILTSQKYLLMTKILITFVMAIGMILTPIYSLSMLRQMFYGYKLFTATNSYFVDSGPREFFVSISILLPVIAIGIYPDFVFSLSVDKVEALLSNYF 498          
BLAST of CV712684 vs. ExPASy Swiss-Prot
Match: NU4C_CERDE (NAD(P)H-quinone oxidoreductase chain 4, chloroplastic OS=Ceratophyllum demersum GN=ndhD PE=3 SV=1)

HSP 1 Score: 409.068 bits (1050), Expect = 1.316e-113
Identity = 207/237 (87.34%), Postives = 218/237 (91.98%), Query Frame = 2
Query:    2 IRINMELLPHAHSIFSPWFMIVGTVQIIYAASTSPGQRNLKKRIAYSSVSHMGFIILGIGSITDTGLNGAVLQIISHGLISAALFFLAGTSYDRIRFAYLDEMGGLAIPIPKIFTLFSILSMASLALPGMSGFVAELIVFFGIITSQKFFLMPKIVITFVMAIGMILTPIYSLSMLRQMFYGYKLFNAPNSYFFDSGPRELFVLISILLPVIGIGIYPDFVLSLSADKAEAIISNFF 712
            IRINMELLPHAHSIFSPW MIVGTVQIIYAASTS GQRNLKKRIAYSSVSHMGFII+GI SITDTGLNGAVLQIISHG I AALFFLAGTSYDRIR  YLDEMGG+AIP+PKIFT+FS  SMASLALPGMSGFVAELIVFFGIITS K+ LMPK++ITFVMAIG+ILTPIYSLSMLRQMFYGYKLFN PNSYF DSGPRELF+ I ILLPVIGIGIYPDFVLSL  DK E I+SN+F
Sbjct:  262 IRINMELLPHAHSIFSPWLMIVGTVQIIYAASTSFGQRNLKKRIAYSSVSHMGFIIIGICSITDTGLNGAVLQIISHGFIGAALFFLAGTSYDRIRIVYLDEMGGIAIPMPKIFTMFSSFSMASLALPGMSGFVAELIVFFGIITSPKYLLMPKVLITFVMAIGIILTPIYSLSMLRQMFYGYKLFNVPNSYFVDSGPRELFISICILLPVIGIGIYPDFVLSLLGDKVEDILSNYF 498          
BLAST of CV712684 vs. ExPASy Swiss-Prot
Match: NU4C_OENEH (NAD(P)H-quinone oxidoreductase chain 4, chloroplastic OS=Oenothera elata subsp. hookeri GN=ndhD PE=2 SV=2)

HSP 1 Score: 407.527 bits (1046), Expect = 3.829e-113
Identity = 201/242 (83.06%), Postives = 223/242 (92.15%), Query Frame = 2
Query:    2 IRINMELLPHAHSIFSPWFMIVGTVQIIYAASTSPGQRNLKKRIAYSSVSHMGFIILGIGSITDTGLNGAVLQIISHGLISAALFFLAGTSYDRIRFAYLDEMGGLAIPIPKIFTLFSILSMASLALPGMSGFVAELIVFFGIITSQKFFLMPKIVITFVMAIGMILTPIYSLSMLRQMFYGYKLFNAPNSYFFDSGPRELFVLISILLPVIGIGIYPDFVLSLSADKAEAIISNFFL*IVF 727
            +RINMELLPHAH +FSP  +IVG +QIIYAASTSPGQ NLKKRIAYSS+SHMGFII+GIGS++DTGLNGA+LQIISHG I AALFFLAGTSYDRIR  YLDEMGG+AIP+PK+FT+ SILSMASLALPG+SGFVAEL+VFFGIITSQK+ LMPKI+I F+MAIGMILTPIYSLSMLRQMFYGYKLFN PN YFFDSGPRELFV IS+LLP+IGIGIYPDFVLSLS +K EAIIS+FF  IVF
Sbjct:  262 VRINMELLPHAHCLFSPGLIIVGAIQIIYAASTSPGQLNLKKRIAYSSISHMGFIIIGIGSLSDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLLYLDEMGGMAIPLPKLFTMLSILSMASLALPGLSGFVAELLVFFGIITSQKYLLMPKILIAFLMAIGMILTPIYSLSMLRQMFYGYKLFNVPNYYFFDSGPRELFVSISLLLPIIGIGIYPDFVLSLSVEKVEAIISHFFFSIVF 503          
BLAST of CV712684 vs. ExPASy Swiss-Prot
Match: NU4C_CARPA (NAD(P)H-quinone oxidoreductase chain 4, chloroplastic OS=Carica papaya GN=ndhD PE=3 SV=1)

HSP 1 Score: 407.527 bits (1046), Expect = 3.829e-113
Identity = 204/237 (86.08%), Postives = 221/237 (93.25%), Query Frame = 2
Query:    2 IRINMELLPHAHSIFSPWFMIVGTVQIIYAASTSPGQRNLKKRIAYSSVSHMGFIILGIGSITDTGLNGAVLQIISHGLISAALFFLAGTSYDRIRFAYLDEMGGLAIPIPKIFTLFSILSMASLALPGMSGFVAELIVFFGIITSQKFFLMPKIVITFVMAIGMILTPIYSLSMLRQMFYGYKLFNAPNSYFFDSGPRELFVLISILLPVIGIGIYPDFVLSLSADKAEAIISNFF 712
            +RINMELLPHAHS+FSPW ++VGT+QIIYAASTS GQRNLKKRIAYSSVSHMGFII+GIGSITD GLNGA+LQI+SHG I AALFFLAGTSYDRIR  YLDEMGG+AI +PKIFT+FSILSMASLALPGMSGFVAELIVFFGIITSQK+FLM KI+ITFVMAIGMILTPIYSLSM RQMFYGYKL NA N  FFDSGPRELFV ISILLPVIGIGIYPDF+LSLS+DK EAI+SN+F
Sbjct:  262 VRINMELLPHAHSLFSPWLVVVGTMQIIYAASTSSGQRNLKKRIAYSSVSHMGFIIIGIGSITDPGLNGAILQIVSHGFIGAALFFLAGTSYDRIRLVYLDEMGGMAISMPKIFTMFSILSMASLALPGMSGFVAELIVFFGIITSQKYFLMAKILITFVMAIGMILTPIYSLSMSRQMFYGYKLINAQNFSFFDSGPRELFVSISILLPVIGIGIYPDFLLSLSSDKVEAILSNYF 498          
BLAST of CV712684 vs. ExPASy Swiss-Prot
Match: NU4C_LIRTU (NAD(P)H-quinone oxidoreductase chain 4, chloroplastic OS=Liriodendron tulipifera GN=ndhD PE=3 SV=1)

HSP 1 Score: 405.986 bits (1042), Expect = 1.114e-112
Identity = 202/237 (85.23%), Postives = 216/237 (91.14%), Query Frame = 2
Query:    2 IRINMELLPHAHSIFSPWFMIVGTVQIIYAASTSPGQRNLKKRIAYSSVSHMGFIILGIGSITDTGLNGAVLQIISHGLISAALFFLAGTSYDRIRFAYLDEMGGLAIPIPKIFTLFSILSMASLALPGMSGFVAELIVFFGIITSQKFFLMPKIVITFVMAIGMILTPIYSLSMLRQMFYGYKLFNAPNSYFFDSGPRELFVLISILLPVIGIGIYPDFVLSLSADKAEAIISNFF 712
            +RINMELLPHAHSIFSPW MIVGT+QIIYAASTS GQ NLKKRIAYSSVSHMGF I+GIGSITDTGLNGA+LQIISHG I AALFFLAGTSYDRIR  YLDEMGG+AIP+PKIFT+FS  SMASLALPGMSGFVAE +VF+GIITS K+ LMPKI+ITFVMAIGMILTPIYSLSM RQMFYGYKLFN PNSYF DSGPRELFV I I LPVIGIGIYPDFVLSLS DK EAI++N+F
Sbjct:  262 VRINMELLPHAHSIFSPWLMIVGTIQIIYAASTSSGQSNLKKRIAYSSVSHMGFTIIGIGSITDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYLDEMGGIAIPMPKIFTMFSSFSMASLALPGMSGFVAESVVFWGIITSPKYLLMPKILITFVMAIGMILTPIYSLSMSRQMFYGYKLFNVPNSYFLDSGPRELFVSICIFLPVIGIGIYPDFVLSLSVDKVEAILANYF 498          
BLAST of CV712684 vs. ExPASy Swiss-Prot
Match: NU4C_GUIAB (NAD(P)H-quinone oxidoreductase chain 4, chloroplastic OS=Guizotia abyssinica GN=ndhD PE=3 SV=1)

HSP 1 Score: 404.06 bits (1037), Expect = 4.233e-112
Identity = 202/237 (85.23%), Postives = 217/237 (91.56%), Query Frame = 2
Query:    2 IRINMELLPHAHSIFSPWFMIVGTVQIIYAASTSPGQRNLKKRIAYSSVSHMGFIILGIGSITDTGLNGAVLQIISHGLISAALFFLAGTSYDRIRFAYLDEMGGLAIPIPKIFTLFSILSMASLALPGMSGFVAELIVFFGIITSQKFFLMPKIVITFVMAIGMILTPIYSLSMLRQMFYGYKLFNAPNSYFFDSGPRELFVLISILLPVIGIGIYPDFVLSLSADKAEAIISNFF 712
            IRINMELLPHAHSIFSPW MIVGT+QIIYAASTS GQRNLKKRIAYSSVSHMGFI++GI SITDTGLNGA+LQIISHG I AALFFLAGTSYDRIR  YLDEMGG+AIP+PKIFT+FS  S++SLALPGMSGFVAE+IVF GIITSQK+ LMPKIVITFVMAIGMILTPIY LSM RQMFYGYKLFN PNS+ FDSGPRELFV ISI LPVIGIG+YPDFVLSLS DK E I+SN+F
Sbjct:  262 IRINMELLPHAHSIFSPWLMIVGTIQIIYAASTSLGQRNLKKRIAYSSVSHMGFILIGIASITDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYLDEMGGVAIPMPKIFTMFSSFSISSLALPGMSGFVAEVIVFLGIITSQKYLLMPKIVITFVMAIGMILTPIYLLSMSRQMFYGYKLFNIPNSFVFDSGPRELFVSISIFLPVIGIGMYPDFVLSLSVDKVEGILSNYF 498          
BLAST of CV712684 vs. ExPASy Swiss-Prot
Match: NU4C_OENPA (NAD(P)H-quinone oxidoreductase chain 4, chloroplastic OS=Oenothera parviflora GN=ndhD PE=3 SV=1)

HSP 1 Score: 403.675 bits (1036), Expect = 5.529e-112
Identity = 198/237 (83.54%), Postives = 220/237 (92.83%), Query Frame = 2
Query:    2 IRINMELLPHAHSIFSPWFMIVGTVQIIYAASTSPGQRNLKKRIAYSSVSHMGFIILGIGSITDTGLNGAVLQIISHGLISAALFFLAGTSYDRIRFAYLDEMGGLAIPIPKIFTLFSILSMASLALPGMSGFVAELIVFFGIITSQKFFLMPKIVITFVMAIGMILTPIYSLSMLRQMFYGYKLFNAPNSYFFDSGPRELFVLISILLPVIGIGIYPDFVLSLSADKAEAIISNFF 712
            +RINMELLPHAH +FSP  +IVG +QIIYAASTSPGQ NLKKRIAYSS+SHMGFII+GIGS++DTGLNGA+LQIISHG I AALFFLAGTSYDRIR  YLDEMGG+AIP+PK+FT+ SILSMASLALPG+SGFVAEL+VFFGIITSQK+ LMPKI+I F+MAIGMILTPIYSLSMLRQMFYGYKLFN PN YFFDSGPRELFV IS+LLP+IGIGIYPDFVLSLS +K EAIIS+FF
Sbjct:  262 VRINMELLPHAHCLFSPGLIIVGAIQIIYAASTSPGQLNLKKRIAYSSISHMGFIIIGIGSLSDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLLYLDEMGGMAIPLPKLFTMLSILSMASLALPGLSGFVAELLVFFGIITSQKYLLMPKILIAFLMAIGMILTPIYSLSMLRQMFYGYKLFNVPNYYFFDSGPRELFVSISLLLPIIGIGIYPDFVLSLSVEKVEAIISHFF 498          
BLAST of CV712684 vs. ExPASy Swiss-Prot
Match: NU4C_OENGL (NAD(P)H-quinone oxidoreductase chain 4, chloroplastic OS=Oenothera glazioviana GN=ndhD PE=3 SV=1)

HSP 1 Score: 403.675 bits (1036), Expect = 5.529e-112
Identity = 198/237 (83.54%), Postives = 220/237 (92.83%), Query Frame = 2
Query:    2 IRINMELLPHAHSIFSPWFMIVGTVQIIYAASTSPGQRNLKKRIAYSSVSHMGFIILGIGSITDTGLNGAVLQIISHGLISAALFFLAGTSYDRIRFAYLDEMGGLAIPIPKIFTLFSILSMASLALPGMSGFVAELIVFFGIITSQKFFLMPKIVITFVMAIGMILTPIYSLSMLRQMFYGYKLFNAPNSYFFDSGPRELFVLISILLPVIGIGIYPDFVLSLSADKAEAIISNFF 712
            +RINMELLPHAH +FSP  +IVG +QIIYAASTSPGQ NLKKRIAYSS+SHMGFII+GIGS++DTGLNGA+LQIISHG I AALFFLAGTSYDRIR  YLDEMGG+AIP+PK+FT+ SILSMASLALPG+SGFVAEL+VFFGIITSQK+ LMPKI+I F+MAIGMILTPIYSLSMLRQMFYGYKLFN PN YFFDSGPRELFV IS+LLP+IGIGIYPDFVLSLS +K EAIIS+FF
Sbjct:  262 VRINMELLPHAHCLFSPGLIIVGAIQIIYAASTSPGQLNLKKRIAYSSISHMGFIIIGIGSLSDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLLYLDEMGGMAIPLPKLFTMLSILSMASLALPGLSGFVAELLVFFGIITSQKYLLMPKILIAFLMAIGMILTPIYSLSMLRQMFYGYKLFNVPNYYFFDSGPRELFVSISLLLPIIGIGIYPDFVLSLSVEKVEAIISHFF 498          
The following BLAST results are available for this feature:
BLAST of CV712684 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 325
Match NameE-valueIdentityDescription
NU4C_EUCGG3.463e-11486.50NAD(P)H-quinone oxidoreductase chain 4, chloroplas... [more]
NU4C_NANDO4.523e-11486.50NAD(P)H-quinone oxidoreductase chain 4, chloroplas... [more]
NU4C_MORIN7.715e-11486.50NAD(P)H-quinone oxidoreductase chain 4, chloroplas... [more]
NU4C_CERDE1.316e-11387.34NAD(P)H-quinone oxidoreductase chain 4, chloroplas... [more]
NU4C_OENEH3.829e-11383.06NAD(P)H-quinone oxidoreductase chain 4, chloroplas... [more]
NU4C_CARPA3.829e-11386.08NAD(P)H-quinone oxidoreductase chain 4, chloroplas... [more]
NU4C_LIRTU1.114e-11285.23NAD(P)H-quinone oxidoreductase chain 4, chloroplas... [more]
NU4C_GUIAB4.233e-11285.23NAD(P)H-quinone oxidoreductase chain 4, chloroplas... [more]
NU4C_OENPA5.529e-11283.54NAD(P)H-quinone oxidoreductase chain 4, chloroplas... [more]
NU4C_OENGL5.529e-11283.54NAD(P)H-quinone oxidoreductase chain 4, chloroplas... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001M02_r Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001M02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712684 ID=CV712684; Name=CV712684; organism=Citrus sinensis; type=EST; length=746bp
GATTCGAATCAATATGGAACTATTACCGCACGCTCATTCTATATTTTCCC
CCTGGTTCATGATAGTAGGTACCGTGCAAATAATTTATGCAGCTTCAACA
TCTCCCGGCCAACGGAATTTAAAAAAAAGAATAGCCTATTCCTCTGTATC
TCATATGGGTTTCATAATTCTAGGAATAGGCTCGATAACCGATACAGGTC
TCAATGGAGCCGTTTTACAAATAATTTCTCATGGGTTGATTAGTGCTGCA
CTTTTTTTCTTGGCAGGAACGAGTTATGATAGAATACGTTTTGCTTATCT
AGACGAAATGGGCGGACTAGCTATACCAATTCCAAAGATCTTCACGCTAT
TCAGTATCTTATCGATGGCCTCCCTTGCATTACCCGGCATGAGTGGTTTT
GTTGCAGAATTGATAGTATTTTTTGGAATAATTACCAGCCAAAAATTTTT
TTTAATGCCAAAAATAGTAATCACTTTTGTAATGGCAATTGGAATGATAT
TAACTCCTATTTATTCATTATCTATGTTACGGCAAATGTTCTATGGGTAC
AAGCTATTTAATGCCCCAAACTCTTATTTTTTTGATTCTGGACCACGGGA
GTTATTTGTTTTGATCTCGATTCTTCTACCCGTAATAGGTATTGGTATTT
ATCCCGATTTCGTTCTCTCACTATCAGCGGACAAGGCCGAAGCTATTATA
TCGAATTTTTTTTTGTAGATAGTTTTCATGACTAANAAAAATCAAA
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