CV712684

Overview
NameCV712684
Unique NameCV712684
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length746
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CV712684 vs. ExPASy Swiss-Prot
Match: NU4C_OENBI (NAD(P)H-quinone oxidoreductase chain 4, chloroplastic OS=Oenothera biennis GN=ndhD PE=3 SV=1)

HSP 1 Score: 403.675 bits (1036), Expect = 5.529e-112
Identity = 198/237 (83.54%), Postives = 220/237 (92.83%), Query Frame = 2 
Query:    2 IRINMELLPHAHSIFSPWFMIVGTVQIIYAASTSPGQRNLKKRIAYSSVSHMGFIILGIGSITDTGLNGAVLQIISHGLISAALFFLAGTSYDRIRFAYLDEMGGLAIPIPKIFTLFSILSMASLALPGMSGFVAELIVFFGIITSQKFFLMPKIVITFVMAIGMILTPIYSLSMLRQMFYGYKLFNAPNSYFFDSGPRELFVLISILLPVIGIGIYPDFVLSLSADKAEAIISNFF 712
            +RINMELLPHAH +FSP  +IVG +QIIYAASTSPGQ NLKKRIAYSS+SHMGFII+GIGS++DTGLNGA+LQIISHG I AALFFLAGTSYDRIR  YLDEMGG+AIP+PK+FT+ SILSMASLALPG+SGFVAEL+VFFGIITSQK+ LMPKI+I F+MAIGMILTPIYSLSMLRQMFYGYKLFN PN YFFDSGPRELFV IS+LLP+IGIGIYPDFVLSLS +K EAIIS+FF
Sbjct:  262 VRINMELLPHAHCLFSPGLIIVGAIQIIYAASTSPGQLNLKKRIAYSSISHMGFIIIGIGSLSDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLLYLDEMGGMAIPLPKLFTMLSILSMASLALPGLSGFVAELLVFFGIITSQKYLLMPKILIAFLMAIGMILTPIYSLSMLRQMFYGYKLFNVPNYYFFDSGPRELFVSISLLLPIIGIGIYPDFVLSLSVEKVEAIISHFF 498
[Close]
BLAST of CV712684 vs. ExPASy Swiss-Prot
Match: NU4C_HELAN (NAD(P)H-quinone oxidoreductase chain 4, chloroplastic OS=Helianthus annuus GN=ndhD PE=3 SV=1)

HSP 1 Score: 403.675 bits (1036), Expect = 5.529e-112
Identity = 200/237 (84.39%), Postives = 216/237 (91.14%), Query Frame = 2 
Query:    2 IRINMELLPHAHSIFSPWFMIVGTVQIIYAASTSPGQRNLKKRIAYSSVSHMGFIILGIGSITDTGLNGAVLQIISHGLISAALFFLAGTSYDRIRFAYLDEMGGLAIPIPKIFTLFSILSMASLALPGMSGFVAELIVFFGIITSQKFFLMPKIVITFVMAIGMILTPIYSLSMLRQMFYGYKLFNAPNSYFFDSGPRELFVLISILLPVIGIGIYPDFVLSLSADKAEAIISNFF 712
            IRINMELLPHAHSIFSPW M+VGT+QIIYAASTS GQRNLKKRIAYSSVSHMGFI++GI SITDTGLNGA+LQIISHG I AALFFLAGTSYDRIR  YLDEMGG+AIP+PKIFT+FS  SMASLALPGMSGFVAE++VF GIITSQK+ LMPKI ITFVMAIGMILTPIY LSM RQ+FYGYKLFN PNSY FDSGPRELFV ISI +PVIGIG+YPDFVLSLS DK E I+SN+F
Sbjct:  262 IRINMELLPHAHSIFSPWLMVVGTIQIIYAASTSLGQRNLKKRIAYSSVSHMGFILIGIASITDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYLDEMGGVAIPMPKIFTMFSSFSMASLALPGMSGFVAEVLVFLGIITSQKYLLMPKIAITFVMAIGMILTPIYLLSMSRQIFYGYKLFNTPNSYVFDSGPRELFVSISIFIPVIGIGMYPDFVLSLSVDKVEGILSNYF 498
[Close]
BLAST of CV712684 vs. ExPASy Swiss-Prot
Match: NU4C_ATRBE (NAD(P)H-quinone oxidoreductase chain 4, chloroplastic OS=Atropa belladonna GN=ndhD PE=3 SV=1)

HSP 1 Score: 403.675 bits (1036), Expect = 5.529e-112
Identity = 201/237 (84.81%), Postives = 217/237 (91.56%), Query Frame = 2 
Query:    2 IRINMELLPHAHSIFSPWFMIVGTVQIIYAASTSPGQRNLKKRIAYSSVSHMGFIILGIGSITDTGLNGAVLQIISHGLISAALFFLAGTSYDRIRFAYLDEMGGLAIPIPKIFTLFSILSMASLALPGMSGFVAELIVFFGIITSQKFFLMPKIVITFVMAIGMILTPIYSLSMLRQMFYGYKLFNAPNSYFFDSGPRELFVLISILLPVIGIGIYPDFVLSLSADKAEAIISNFF 712
            IRINMELLPHAHSIFSPW MI+GT+QIIYAASTS GQRNLKKRIAYSSVSHMGFII+GI S+TDTGLNGA+LQIISHG I AALFFLAGT+YDRIR  YLDEMGG+AIP+PK+FT+FS  SMASLALPGMSGFVAELIVFFGIIT QK+ L+PKI+ITFVMAIGMILTPIYSLSM RQMFYGYKLFNAP   FFDSGPRELF+ ISI LPVIGIGIYPDFVLSL+ DK E I+SNFF
Sbjct:  262 IRINMELLPHAHSIFSPWLMIIGTIQIIYAASTSLGQRNLKKRIAYSSVSHMGFIIIGISSLTDTGLNGALLQIISHGFIGAALFFLAGTTYDRIRLVYLDEMGGIAIPMPKMFTMFSSFSMASLALPGMSGFVAELIVFFGIITGQKYVLIPKILITFVMAIGMILTPIYSLSMSRQMFYGYKLFNAPKDSFFDSGPRELFLSISIFLPVIGIGIYPDFVLSLAVDKVEVILSNFF 498
[Close]
BLAST of CV712684 vs. ExPASy Swiss-Prot
Match: NU4C_SOLLC (NAD(P)H-quinone oxidoreductase chain 4, chloroplastic OS=Solanum lycopersicum GN=ndhD PE=3 SV=1)

HSP 1 Score: 402.905 bits (1034), Expect = 9.431e-112
Identity = 200/237 (84.39%), Postives = 217/237 (91.56%), Query Frame = 2 
Query:    2 IRINMELLPHAHSIFSPWFMIVGTVQIIYAASTSPGQRNLKKRIAYSSVSHMGFIILGIGSITDTGLNGAVLQIISHGLISAALFFLAGTSYDRIRFAYLDEMGGLAIPIPKIFTLFSILSMASLALPGMSGFVAELIVFFGIITSQKFFLMPKIVITFVMAIGMILTPIYSLSMLRQMFYGYKLFNAPNSYFFDSGPRELFVLISILLPVIGIGIYPDFVLSLSADKAEAIISNFF 712
            IRINMELLPHAHSIFSPW MI+GT+QIIYAASTS GQRNLKKRIAYSSVSHMGFII+GI S+TDTGLNGA+LQIISHG I AALFFLAGT+YDRIR  YLDEMGG+AIP+PK+FT+FS  SMASLALPGMSGFVAELIVFFGIIT QK+ LMPK++ITFVMAIG+ILTPIYSLSM RQMFYGYKLFNAP   FFDSGPRELF+ ISI LPVIGIGIYPDFVLSL+ DK E I+SNFF
Sbjct:  262 IRINMELLPHAHSIFSPWLMIIGTIQIIYAASTSLGQRNLKKRIAYSSVSHMGFIIIGISSLTDTGLNGALLQIISHGFIGAALFFLAGTTYDRIRLVYLDEMGGIAIPMPKMFTMFSSFSMASLALPGMSGFVAELIVFFGIITGQKYLLMPKLLITFVMAIGIILTPIYSLSMPRQMFYGYKLFNAPKDSFFDSGPRELFLSISIFLPVIGIGIYPDFVLSLAVDKVEVILSNFF 498
[Close]
BLAST of CV712684 vs. ExPASy Swiss-Prot
Match: NU4C_OENAR (NAD(P)H-quinone oxidoreductase chain 4, chloroplastic OS=Oenothera argillicola GN=ndhD PE=3 SV=1)

HSP 1 Score: 402.519 bits (1033), Expect = 1.232e-111
Identity = 197/237 (83.12%), Postives = 220/237 (92.83%), Query Frame = 2 
Query:    2 IRINMELLPHAHSIFSPWFMIVGTVQIIYAASTSPGQRNLKKRIAYSSVSHMGFIILGIGSITDTGLNGAVLQIISHGLISAALFFLAGTSYDRIRFAYLDEMGGLAIPIPKIFTLFSILSMASLALPGMSGFVAELIVFFGIITSQKFFLMPKIVITFVMAIGMILTPIYSLSMLRQMFYGYKLFNAPNSYFFDSGPRELFVLISILLPVIGIGIYPDFVLSLSADKAEAIISNFF 712
            +RINMELLPHAH +FSP  +IVG +QIIYAASTSPGQ NLKKRIAYSS+SHMGFII+GIGS++DTGLNGA+LQIISHG I AALFFLAGTSYDRIR  YLDEMGG+AIP+PK+FT+ SILSM+SLALPG+SGFVAEL+VFFGIITSQK+ LMPKI+I F+MAIGMILTPIYSLSMLRQMFYGYKLFN PN YFFDSGPRELFV IS+LLP+IGIGIYPDFVLSLS +K EAIIS+FF
Sbjct:  262 VRINMELLPHAHCLFSPGLIIVGAIQIIYAASTSPGQLNLKKRIAYSSISHMGFIIIGIGSLSDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLLYLDEMGGMAIPLPKLFTMLSILSMSSLALPGLSGFVAELLVFFGIITSQKYLLMPKILIAFLMAIGMILTPIYSLSMLRQMFYGYKLFNVPNYYFFDSGPRELFVSISLLLPIIGIGIYPDFVLSLSVEKVEAIISHFF 498
[Close]
BLAST of CV712684 vs. ExPASy Swiss-Prot
Match: NU4C_LOBMA (NAD(P)H-quinone oxidoreductase chain 4, chloroplastic OS=Lobularia maritima GN=ndhD PE=3 SV=2)

HSP 1 Score: 402.519 bits (1033), Expect = 1.232e-111
Identity = 200/237 (84.39%), Postives = 219/237 (92.41%), Query Frame = 2 
Query:    2 IRINMELLPHAHSIFSPWFMIVGTVQIIYAASTSPGQRNLKKRIAYSSVSHMGFIILGIGSITDTGLNGAVLQIISHGLISAALFFLAGTSYDRIRFAYLDEMGGLAIPIPKIFTLFSILSMASLALPGMSGFVAELIVFFGIITSQKFFLMPKIVITFVMAIGMILTPIYSLSMLRQMFYGYKLFNAPNSYFFDSGPRELFVLISILLPVIGIGIYPDFVLSLSADKAEAIISNFF 712
            +RINMELLPHAHS+FSPW M+VGT+QIIYAASTSPGQRNLKKRIAYSSVSHMGFII+GIGSITD GLNGA+LQIISHG I AALFFLAGTSYDRIR  YLDEMGG+AI IPKIFT+F+ILSMASLALPGMSGFVAELIVFFGIITSQK+FL+ KI+I FVMAIGMILTPIY LSM RQMFYGYKL N  N  FFDSGPRELF+ ISILLP+IGIGIYPDFVLSL++DK E+I+SN+F
Sbjct:  262 VRINMELLPHAHSMFSPWLMVVGTIQIIYAASTSPGQRNLKKRIAYSSVSHMGFIIIGIGSITDPGLNGAILQIISHGFIGAALFFLAGTSYDRIRLGYLDEMGGMAISIPKIFTMFTILSMASLALPGMSGFVAELIVFFGIITSQKYFLISKILIIFVMAIGMILTPIYLLSMSRQMFYGYKLINVKNFSFFDSGPRELFLSISILLPIIGIGIYPDFVLSLASDKVESILSNYF 498
[Close]
BLAST of CV712684 vs. ExPASy Swiss-Prot
Match: NU4C_PELHO (NAD(P)H-quinone oxidoreductase chain 4, chloroplastic OS=Pelargonium hortorum GN=ndhD PE=3 SV=2)

HSP 1 Score: 402.134 bits (1032), Expect = 1.609e-111
Identity = 201/237 (84.81%), Postives = 219/237 (92.41%), Query Frame = 2 
Query:    2 IRINMELLPHAHSIFSPWFMIVGTVQIIYAASTSPGQRNLKKRIAYSSVSHMGFIILGIGSITDTGLNGAVLQIISHGLISAALFFLAGTSYDRIRFAYLDEMGGLAIPIPKIFTLFSILSMASLALPGMSGFVAELIVFFGIITSQKFFLMPKIVITFVMAIGMILTPIYSLSMLRQMFYGYKLFNAPNSYFFDSGPRELFVLISILLPVIGIGIYPDFVLSLSADKAEAIISNFF 712
            +RINMELLPHAHSIF+P+ +IVG +QI+YAASTS GQRNLKKRIAYSSVSHMGFII+GIGSITD GL+GA+LQIISHG I AALFFLAGTSYDRIR  + DEMGG+A+ IPKIFT+FSILSMASLALPGMSGFVAELIVFFGIITSQKF LMPKI+ITFVMAIGMILTPIYSLSMLRQMFYGY+LFNAPN  FFDSGPRELFV ISILLPVIG+GIYPDF+LSLS DK E I+S FF
Sbjct:  262 VRINMELLPHAHSIFAPYLIIVGAIQIVYAASTSLGQRNLKKRIAYSSVSHMGFIIIGIGSITDAGLSGALLQIISHGFIGAALFFLAGTSYDRIRLGFFDEMGGMAVAIPKIFTMFSILSMASLALPGMSGFVAELIVFFGIITSQKFLLMPKILITFVMAIGMILTPIYSLSMLRQMFYGYRLFNAPNPSFFDSGPRELFVSISILLPVIGMGIYPDFLLSLSVDKVELIVSQFF 498
[Close]
BLAST of CV712684 vs. ExPASy Swiss-Prot
Match: NU4C_TOBAC (NAD(P)H-quinone oxidoreductase chain 4, chloroplastic OS=Nicotiana tabacum GN=ndhD PE=2 SV=2)

HSP 1 Score: 401.749 bits (1031), Expect = 2.101e-111
Identity = 200/237 (84.39%), Postives = 216/237 (91.14%), Query Frame = 2 
Query:    2 IRINMELLPHAHSIFSPWFMIVGTVQIIYAASTSPGQRNLKKRIAYSSVSHMGFIILGIGSITDTGLNGAVLQIISHGLISAALFFLAGTSYDRIRFAYLDEMGGLAIPIPKIFTLFSILSMASLALPGMSGFVAELIVFFGIITSQKFFLMPKIVITFVMAIGMILTPIYSLSMLRQMFYGYKLFNAPNSYFFDSGPRELFVLISILLPVIGIGIYPDFVLSLSADKAEAIISNFF 712
            IRINMELLPHAHSIFSPW MI+GT+QIIYAA TS GQRNLKKRIAYSSVSHMGFII+GI S+TDTGLNGA+LQIISHG I AALFFLAGT+YDRIR  YLDEMGG+AIP+PK+FT+FS  SMASLALPGMSGFVAELIVFFGIIT QK+ L+PKI+ITFVMAIGMILTPIYSLSM RQMFYGYKLFNAP   FFDSGPRELF+ ISI LPVIGIGIYPDFVLSL+ DK E I+SNFF
Sbjct:  262 IRINMELLPHAHSIFSPWLMIIGTIQIIYAALTSLGQRNLKKRIAYSSVSHMGFIIIGISSLTDTGLNGALLQIISHGFIGAALFFLAGTTYDRIRLVYLDEMGGIAIPMPKMFTMFSSFSMASLALPGMSGFVAELIVFFGIITGQKYLLIPKILITFVMAIGMILTPIYSLSMSRQMFYGYKLFNAPKDSFFDSGPRELFLSISIFLPVIGIGIYPDFVLSLAVDKVEVILSNFF 498
[Close]
BLAST of CV712684 vs. ExPASy Swiss-Prot
Match: NU4C_NICTO (NAD(P)H-quinone oxidoreductase chain 4, chloroplastic OS=Nicotiana tomentosiformis GN=ndhD PE=3 SV=1)

HSP 1 Score: 401.749 bits (1031), Expect = 2.101e-111
Identity = 200/237 (84.39%), Postives = 216/237 (91.14%), Query Frame = 2 
Query:    2 IRINMELLPHAHSIFSPWFMIVGTVQIIYAASTSPGQRNLKKRIAYSSVSHMGFIILGIGSITDTGLNGAVLQIISHGLISAALFFLAGTSYDRIRFAYLDEMGGLAIPIPKIFTLFSILSMASLALPGMSGFVAELIVFFGIITSQKFFLMPKIVITFVMAIGMILTPIYSLSMLRQMFYGYKLFNAPNSYFFDSGPRELFVLISILLPVIGIGIYPDFVLSLSADKAEAIISNFF 712
            IRINMELLPHAHSIFSPW MI+GT+QIIYAASTS GQRNLKKRIAYSSVSHMGFII+GI S+TDTGLNGA+LQIISHG I AALFFLAGT+YDRIR  YLDEMGG+A P+PK+FT+FS  SMASLALPGMSGFVAELIVFFGIIT QK+ L+PKI+ITFVMAIGMILTPIYSLSM RQMFYGYKLFNAP   FFDSGPRELF+ ISI LPVIGIGIYPDFVLSL+ DK E I+SNFF
Sbjct:  262 IRINMELLPHAHSIFSPWLMIIGTIQIIYAASTSLGQRNLKKRIAYSSVSHMGFIIIGISSLTDTGLNGALLQIISHGFIGAALFFLAGTTYDRIRLVYLDEMGGIASPMPKMFTMFSSFSMASLALPGMSGFVAELIVFFGIITGQKYLLIPKILITFVMAIGMILTPIYSLSMSRQMFYGYKLFNAPKDSFFDSGPRELFLSISIFLPVIGIGIYPDFVLSLAVDKVEVILSNFF 498
[Close]
BLAST of CV712684 vs. ExPASy Swiss-Prot
Match: NU4C_NICSY (NAD(P)H-quinone oxidoreductase chain 4, chloroplastic OS=Nicotiana sylvestris GN=ndhD PE=3 SV=1)

HSP 1 Score: 401.749 bits (1031), Expect = 2.101e-111
Identity = 200/237 (84.39%), Postives = 216/237 (91.14%), Query Frame = 2 
Query:    2 IRINMELLPHAHSIFSPWFMIVGTVQIIYAASTSPGQRNLKKRIAYSSVSHMGFIILGIGSITDTGLNGAVLQIISHGLISAALFFLAGTSYDRIRFAYLDEMGGLAIPIPKIFTLFSILSMASLALPGMSGFVAELIVFFGIITSQKFFLMPKIVITFVMAIGMILTPIYSLSMLRQMFYGYKLFNAPNSYFFDSGPRELFVLISILLPVIGIGIYPDFVLSLSADKAEAIISNFF 712
            IRINMELLPHAHSIFSPW MI+GT+QIIYAA TS GQRNLKKRIAYSSVSHMGFII+GI S+TDTGLNGA+LQIISHG I AALFFLAGT+YDRIR  YLDEMGG+AIP+PK+FT+FS  SMASLALPGMSGFVAELIVFFGIIT QK+ L+PKI+ITFVMAIGMILTPIYSLSM RQMFYGYKLFNAP   FFDSGPRELF+ ISI LPVIGIGIYPDFVLSL+ DK E I+SNFF
Sbjct:  262 IRINMELLPHAHSIFSPWLMIIGTIQIIYAALTSLGQRNLKKRIAYSSVSHMGFIIIGISSLTDTGLNGALLQIISHGFIGAALFFLAGTTYDRIRLVYLDEMGGIAIPMPKMFTMFSSFSMASLALPGMSGFVAELIVFFGIITGQKYLLIPKILITFVMAIGMILTPIYSLSMSRQMFYGYKLFNAPKDSFFDSGPRELFLSISIFLPVIGIGIYPDFVLSLAVDKVEVILSNFF 498
The following BLAST results are available for this feature:
BLAST of CV712684 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 325
Match NameE-valueIdentityDescription
NU4C_OENBI5.529e-11283.54NAD(P)H-quinone oxidoreductase chain 4, chloroplas... [more]
NU4C_HELAN5.529e-11284.39NAD(P)H-quinone oxidoreductase chain 4, chloroplas... [more]
NU4C_ATRBE5.529e-11284.81NAD(P)H-quinone oxidoreductase chain 4, chloroplas... [more]
NU4C_SOLLC9.431e-11284.39NAD(P)H-quinone oxidoreductase chain 4, chloroplas... [more]
NU4C_OENAR1.232e-11183.12NAD(P)H-quinone oxidoreductase chain 4, chloroplas... [more]
NU4C_LOBMA1.232e-11184.39NAD(P)H-quinone oxidoreductase chain 4, chloroplas... [more]
NU4C_PELHO1.609e-11184.81NAD(P)H-quinone oxidoreductase chain 4, chloroplas... [more]
NU4C_TOBAC2.101e-11184.39NAD(P)H-quinone oxidoreductase chain 4, chloroplas... [more]
NU4C_NICTO2.101e-11184.39NAD(P)H-quinone oxidoreductase chain 4, chloroplas... [more]
NU4C_NICSY2.101e-11184.39NAD(P)H-quinone oxidoreductase chain 4, chloroplas... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001M02_r Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001M02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712684 ID=CV712684; Name=CV712684; organism=Citrus sinensis; type=EST; length=746bp
GATTCGAATCAATATGGAACTATTACCGCACGCTCATTCTATATTTTCCC
CCTGGTTCATGATAGTAGGTACCGTGCAAATAATTTATGCAGCTTCAACA
TCTCCCGGCCAACGGAATTTAAAAAAAAGAATAGCCTATTCCTCTGTATC
TCATATGGGTTTCATAATTCTAGGAATAGGCTCGATAACCGATACAGGTC
TCAATGGAGCCGTTTTACAAATAATTTCTCATGGGTTGATTAGTGCTGCA
CTTTTTTTCTTGGCAGGAACGAGTTATGATAGAATACGTTTTGCTTATCT
AGACGAAATGGGCGGACTAGCTATACCAATTCCAAAGATCTTCACGCTAT
TCAGTATCTTATCGATGGCCTCCCTTGCATTACCCGGCATGAGTGGTTTT
GTTGCAGAATTGATAGTATTTTTTGGAATAATTACCAGCCAAAAATTTTT
TTTAATGCCAAAAATAGTAATCACTTTTGTAATGGCAATTGGAATGATAT
TAACTCCTATTTATTCATTATCTATGTTACGGCAAATGTTCTATGGGTAC
AAGCTATTTAATGCCCCAAACTCTTATTTTTTTGATTCTGGACCACGGGA
GTTATTTGTTTTGATCTCGATTCTTCTACCCGTAATAGGTATTGGTATTT
ATCCCGATTTCGTTCTCTCACTATCAGCGGACAAGGCCGAAGCTATTATA
TCGAATTTTTTTTTGTAGATAGTTTTCATGACTAANAAAAATCAAA
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