CV712684

Overview
NameCV712684
Unique NameCV712684
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length746
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6698 contig Csv1_Contig6698:1455..2200. BLAST: Citrus Unigene V1 Contigs to TAIR9
Homology
BLAST of CV712684 vs. ExPASy Swiss-Prot
Match: NU4C_CHAVU (NAD(P)H-quinone oxidoreductase chain 4, chloroplastic OS=Chara vulgaris GN=ndhD PE=3 SV=1)

HSP 1 Score: 274.248 bits (700), Expect = 5.059e-73
Identity = 133/224 (59.38%), Postives = 178/224 (79.46%), Query Frame = 2
Query:    2 IRINMELLPHAHSIFSPWFMIVGTVQIIYAASTSPGQRNLKKRIAYSSVSHMGFIILGIGSITDTGLNGAVLQIISHGLISAALFFLAGTSYDRIRFAYLDEMGGLAIPIPKIFTLFSILSMASLALPGMSGFVAELIVFFGIITSQKFFLMPKIVITFVMAIGMILTPIYSLSMLRQMFYGYKLFNAPNSYFFDSGPRELFVLISILLPVIGIGIYPDFVLSL 673
            IRINM L P+AH+ F+PW +I+GTVQIIYAAS    Q+NLK+RIAYSS+SHMGF+++GI S T+ GL+GA+ Q+ISHGLI A+LFFLAGT+YDRIR   L EMGG+A+ +PK+F++F+  S+ASLALP MSGFVAE+++F GII+S  +    +  I    A+G+ILTPIY LSMLRQMFYG   F+  +  F DSGPRE+F+++S+ +PVI IG+YP+ +LS+
Sbjct:  262 IRINMTLFPNAHAYFAPWLVILGTVQIIYAASVCLSQKNLKRRIAYSSISHMGFVLIGICSFTNIGLSGAICQMISHGLIGASLFFLAGTTYDRIRTVSLSEMGGIALKMPKMFSMFTGFSLASLALPTMSGFVAEMMIFLGIISSTFYSPSFRCFIILFQALGVILTPIYLLSMLRQMFYGVDTFHFESMSFIDSGPREVFIIVSLFIPVIIIGLYPNILLSI 485          
BLAST of CV712684 vs. ExPASy Swiss-Prot
Match: NU4C_MESVI (NAD(P)H-quinone oxidoreductase chain 4, chloroplastic OS=Mesostigma viride GN=ndhD PE=3 SV=1)

HSP 1 Score: 260.766 bits (665), Expect = 5.788e-69
Identity = 133/238 (55.88%), Postives = 177/238 (74.37%), Query Frame = 2
Query:    2 IRINMELLPHAHSIFSPWFMIVGTVQIIYAASTSPGQRNLKKRIAYSSVSHMGFIILGIGSITDTGLNGAVLQIISHGLISAALFFLAGTSYDRIRFAYLDEMGGLAIPIPKIFTLFSILSMASLALPGMSGFVAELIVFFGIITSQKFFLMPKIVITFVMAIGMILTPIYSLSMLRQMFYG---YKLFNAPNSYFFDSGPRELFVLISILLPVIGIGIYPDFVLSLSADKAEAIISN 706
            IRINM +LP+AH  F+P+  I+G + IIYAA TS  QRN+K++IAYSS+SHMGF+++GI S TD GL+GA+LQ++SHGLI A+LFFLAGT+YDR R   L++MGG+A  +PKIF +F+  S+ASLALPGMSGFVAEL+VF G   S  + +  + +ITF+ AIG+I+TPIY LSMLRQ+FYG    KL    N    D+  RE+F++  +L+PVIGIGIYP  +  +   K  AII +
Sbjct:  261 IRINMNMLPNAHIYFAPYLAIIGVINIIYAALTSFAQRNIKRKIAYSSISHMGFVLIGISSFTDIGLSGAMLQMVSHGLIGASLFFLAGTTYDRTRTLILEDMGGIAKYMPKIFAMFTTCSLASLALPGMSGFVAELMVFLGFANSNAYSIEFRGIITFLEAIGIIVTPIYLLSMLRQVFYGSENLKLLKVNN--LIDASAREIFIISCLLVPVIGIGIYPRILTQIYDLKTNAIIEH 496          
BLAST of CV712684 vs. ExPASy Swiss-Prot
Match: NU4C_ACAM1 (NAD(P)H-quinone oxidoreductase chain 4 OS=Acaryochloris marina (strain MBIC 11017) GN=ndhD PE=3 SV=1)

HSP 1 Score: 253.447 bits (646), Expect = 9.241e-67
Identity = 126/235 (53.62%), Postives = 173/235 (73.62%), Query Frame = 2
Query:    2 IRINMELLPHAHSIFSPWFMIVGTVQIIYAASTSPGQRNLKKRIAYSSVSHMGFIILGIGSITDTGLNGAVLQIISHGLISAALFFLAGTSYDRIRFAYLDEMGGLAIPIPKIFTLFSILSMASLALPGMSGFVAELIVFFGIITSQKFFLMPKIVITFVMAIGMILTPIYSLSMLRQMFYGYKLFN-APNSYFFDSGPRELFVLISILLPVIGIGIYPDFVLSLSADKAEAIIS 703
            IR+N+ELLP AH+ F+P  +I+G V IIYAA TS  QRNLK++IAYSS+SHMGF+++GI S TD G++GAVLQ++SHGLI A+LFFL G +YDR     L+EMGG+A  +PKIF +F+  SMASLALPGMSGFVAEL+VF G+ TS  + L  ++ +  +  IG+ILTPIY LSMLR++FYG +      +    D+ PRE+FV+  +L+P+IGIG+YP  +  +   K   +++
Sbjct:  265 IRMNVELLPDAHAYFAPALIILGVVNIIYAALTSFAQRNLKRKIAYSSISHMGFVLIGIASFTDLGMSGAVLQMVSHGLIGASLFFLVGATYDRTHTLILEEMGGVAQNMPKIFAMFTTCSMASLALPGMSGFVAELMVFVGLATSDAYSLAFRVPVVILAGIGVILTPIYLLSMLREIFYGPENKELTSHEKLVDAEPREIFVIACLLVPIIGIGLYPKIITQIYDAKTTQLVA 499          
BLAST of CV712684 vs. ExPASy Swiss-Prot
Match: NU4C2_SYNJA (NAD(P)H-quinone oxidoreductase chain 4 2 OS=Synechococcus sp. (strain JA-3-3Ab) GN=ndhD2 PE=3 SV=1)

HSP 1 Score: 253.062 bits (645), Expect = 1.207e-66
Identity = 122/235 (51.91%), Postives = 178/235 (75.74%), Query Frame = 2
Query:    2 IRINMELLPHAHSIFSPWFMIVGTVQIIYAASTSPGQRNLKKRIAYSSVSHMGFIILGIGSITDTGLNGAVLQIISHGLISAALFFLAGTSYDRIRFAYLDEMGGLAIPIPKIFTLFSILSMASLALPGMSGFVAELIVFFGIITSQKFFLMPKIVITFVMAIGMILTPIYSLSMLRQMFYGYKLFN-APNSYFFDSGPRELFVLISILLPVIGIGIYPDFVLSLSADKAEAIIS 703
            +R+N+ +LP AH  F+P  +++G V II+AA TS  QRNLK++IAYSS+SHMGF+++GIGS+T+ G++GA+LQ+ISHGLI A+LFFL G +YDR     L+EMGG+ + +PKIF++F+  S+ASLALPGMSGFVAEL+VF G+ T+  + L  ++V+ F+ A+G+ILTPIY LSMLRQ+F+G +      +    D+ PRE+F++  +L+P+IGIG+YP  V SL      A+++
Sbjct:  278 MRMNVGMLPDAHLYFAPVLIVLGVVNIIFAALTSFAQRNLKRKIAYSSISHMGFVLIGIGSLTEIGMSGAMLQMISHGLIGASLFFLVGATYDRTHTLELEEMGGVGLKMPKIFSMFTACSLASLALPGMSGFVAELMVFIGMATTDAYSLPFRLVVVFLAAVGVILTPIYLLSMLRQIFFGPENKELTEHEELVDAEPREVFIIACLLIPIIGIGLYPKLVTSLYDQSTNALVA 512          
BLAST of CV712684 vs. ExPASy Swiss-Prot
Match: NU4C2_ANASP (NAD(P)H-quinone oxidoreductase chain 4-2 OS=Anabaena sp. (strain PCC 7120) GN=ndhD2 PE=3 SV=1)

HSP 1 Score: 252.677 bits (644), Expect = 1.576e-66
Identity = 125/225 (55.56%), Postives = 166/225 (73.78%), Query Frame = 2
Query:    2 IRINMELLPHAHSIFSPWFMIVGTVQIIYAASTSPGQRNLKKRIAYSSVSHMGFIILGIGSITDTGLNGAVLQIISHGLISAALFFLAGTSYDRIRFAYLDEMGGLAIPIPKIFTLFSILSMASLALPGMSGFVAELIVFFGIITSQKFFLMPKIVITFVMAIGMILTPIYSLSMLRQMFYGYKLFN-APNSYFFDSGPRELFVLISILLPVIGIGIYPDFVLSL 673
            IR+N  +LP AH+ F+P  +++G V IIYAA TS  QRNLK++IAYSS+SHMGF+I+G  S TD GL+GAVLQ++SHGLI A+LFFL G +YDR     LDEMGG+   +PKIF +F+  SMASLALPGMSGFVAEL+VF G  TS  +    K+++ F+MA+G+ILTPIY LSMLR++FYG +      +    D+ PRE+FV+  +L+P+IGIG YP  +  +
Sbjct:  263 IRMNAGILPDAHAYFAPVLVVLGVVNIIYAALTSFAQRNLKRKIAYSSISHMGFVIIGFASFTDLGLSGAVLQMVSHGLIGASLFFLVGATYDRTHTLMLDEMGGVGKRMPKIFAMFTACSMASLALPGMSGFVAELMVFVGFATSDAYSSTFKVIVVFLMAVGVILTPIYLLSMLREIFYGKENEELVSHQQLIDAEPREVFVIACLLVPIIGIGFYPKLLTQM 487          
BLAST of CV712684 vs. ExPASy Swiss-Prot
Match: NU4C1_ANAVT (NAD(P)H-quinone oxidoreductase chain 4 1 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=ndhD1 PE=3 SV=1)

HSP 1 Score: 252.677 bits (644), Expect = 1.576e-66
Identity = 125/225 (55.56%), Postives = 166/225 (73.78%), Query Frame = 2
Query:    2 IRINMELLPHAHSIFSPWFMIVGTVQIIYAASTSPGQRNLKKRIAYSSVSHMGFIILGIGSITDTGLNGAVLQIISHGLISAALFFLAGTSYDRIRFAYLDEMGGLAIPIPKIFTLFSILSMASLALPGMSGFVAELIVFFGIITSQKFFLMPKIVITFVMAIGMILTPIYSLSMLRQMFYGYKLFN-APNSYFFDSGPRELFVLISILLPVIGIGIYPDFVLSL 673
            IR+N  +LP AH+ F+P  +++G V IIYAA TS  QRNLK++IAYSS+SHMGF+I+G  S TD GL+GAVLQ++SHGLI A+LFFL G +YDR     LDEMGG+   +PKIF +F+  SMASLALPGMSGFVAEL+VF G  TS  +    K+++ F+MA+G+ILTPIY LSMLR++FYG +      +    D+ PRE+FV+  +L+P+IGIG YP  +  +
Sbjct:  263 IRMNAGILPDAHAYFAPVLVVLGVVNIIYAALTSFAQRNLKRKIAYSSISHMGFVIIGFASFTDLGLSGAVLQMVSHGLIGASLFFLVGATYDRTHTLMLDEMGGVGKRMPKIFAMFTACSMASLALPGMSGFVAELMVFVGFATSDAYSSTFKVIVVFLMAVGVILTPIYLLSMLREIFYGKENEELVSHQQLIDAEPREVFVIACLLVPIIGIGFYPKLLTQM 487          
BLAST of CV712684 vs. ExPASy Swiss-Prot
Match: NU4C2_SYNJB (NAD(P)H-quinone oxidoreductase chain 4 2 OS=Synechococcus sp. GN=ndhD2 PE=3 SV=1)

HSP 1 Score: 248.054 bits (632), Expect = 3.883e-65
Identity = 120/235 (51.06%), Postives = 176/235 (74.89%), Query Frame = 2
Query:    2 IRINMELLPHAHSIFSPWFMIVGTVQIIYAASTSPGQRNLKKRIAYSSVSHMGFIILGIGSITDTGLNGAVLQIISHGLISAALFFLAGTSYDRIRFAYLDEMGGLAIPIPKIFTLFSILSMASLALPGMSGFVAELIVFFGIITSQKFFLMPKIVITFVMAIGMILTPIYSLSMLRQMFYGYKLFN-APNSYFFDSGPRELFVLISILLPVIGIGIYPDFVLSLSADKAEAIIS 703
            +R+N  +LP AH  F+P  +++G V II+AA TS  QRNLK++IA SS+SHMGF+++GIGS+T+ G++GA+LQ+ISHGLI A+LFFL G +YDR     L+EMGG+ + +PKIF++F+  S+ASLALPGMSGFVAE++VF G+ T+  + L  ++V+ F+ A+G+ILTPIY LSMLRQ+F+G +      +    D+ PRE+F++  +L+P+IGIG+YP  V SL      A+++
Sbjct:  278 MRMNAGMLPDAHLYFAPVLIVLGVVNIIFAALTSFAQRNLKRKIACSSISHMGFVLIGIGSLTEIGMSGAMLQMISHGLIGASLFFLVGATYDRTHTLELEEMGGVGLKMPKIFSMFTACSLASLALPGMSGFVAEIMVFIGMATTDAYSLPFRLVVVFLAAVGVILTPIYLLSMLRQIFFGPENKELTEHEELVDAEPREVFIIACLLIPIIGIGLYPKLVTSLYDQSTNALVA 512          
BLAST of CV712684 vs. ExPASy Swiss-Prot
Match: NU4C1_THEEB (NAD(P)H-quinone oxidoreductase chain 4 1 OS=Thermosynechococcus elongatus (strain BP-1) GN=ndhD1 PE=3 SV=2)

HSP 1 Score: 243.817 bits (621), Expect = 7.322e-64
Identity = 118/225 (52.44%), Postives = 169/225 (75.11%), Query Frame = 2
Query:    2 IRINMELLPHAHSIFSPWFMIVGTVQIIYAASTSPGQRNLKKRIAYSSVSHMGFIILGIGSITDTGLNGAVLQIISHGLISAALFFLAGTSYDRIRFAYLDEMGGLAIPIPKIFTLFSILSMASLALPGMSGFVAELIVFFGIITSQKFFLMPKIVITFVMAIGMILTPIYSLSMLRQMFYGYKLFN-APNSYFFDSGPRELFVLISILLPVIGIGIYPDFVLSL 673
            IR+N+++LP AH+ F+P  +I+G V IIYAA TS  QRNLK++IAYSS+SH+GF+++GI S T+ G++GAVLQ++SHGLI A+LFFL G +YDR     L+EMGG+   + KIF +F+  S+ASLALPGMSGFVAEL+VF G  TS  + L  ++++ F+ A+G+ILTPIY LSMLR++FYG +      +    D+ PRE+F++  +L+P+IGIG+YP  +  +
Sbjct:  263 IRMNVDMLPAAHAKFAPVLVILGVVNIIYAALTSYAQRNLKRKIAYSSISHIGFVLIGIASFTNLGMSGAVLQMVSHGLIGASLFFLVGATYDRTHTLILEEMGGVGQKMKKIFAMFTACSLASLALPGMSGFVAELMVFIGFATSDAYSLPFRVIVVFLAAVGVILTPIYLLSMLREIFYGPENKELVEHEALVDAEPREVFIIACLLVPIIGIGLYPKLLTQI 487          
BLAST of CV712684 vs. ExPASy Swiss-Prot
Match: NU4C1_MICAN (NAD(P)H-quinone oxidoreductase chain 4 1 OS=Microcystis aeruginosa (strain NIES-843) GN=ndhD1 PE=3 SV=1)

HSP 1 Score: 243.817 bits (621), Expect = 7.322e-64
Identity = 121/239 (50.63%), Postives = 174/239 (72.80%), Query Frame = 2
Query:    2 IRINMELLPHAHSIFSPWFMIVGTVQIIYAASTSPGQRNLKKRIAYSSVSHMGFIILGIGSITDTGLNGAVLQIISHGLISAALFFLAGTSYDRIRFAYLDEMGGLAIPIPKIFTLFSILSMASLALPGMSGFVAELIVFFGIITSQKFFLMPKIVITFVMAIGMILTPIYSLSMLRQMFYGYKLFNAPNSY-FFDSGPRELFVLISILLPVIGIGIYPDFVLSL---SADKAEAIISN 706
            +R+NM +LP AH++F+P  +I+G V IIYAA TS  QRNLK++IAYSS+SHMGF+++G+ S TD G +GA+LQ+ISHGLI A+LFF+ G +YDR     LDEMGG+   + K+F +++  S+ASLALPGMSGFVAEL+VF G  TS  +    +++I F+ AIG+ILTPIY LSMLR++ YG +       +   D+ PRE+F++ S+L+P+IGIG+YP    ++   + +K  A++ N
Sbjct:  263 LRMNMGMLPDAHAVFAPVLVILGVVNIIYAALTSFAQRNLKRKIAYSSISHMGFVLIGMASFTDIGTSGAMLQMISHGLIGASLFFMVGCTYDRTHTLMLDEMGGVGKKMKKVFAMWTTCSLASLALPGMSGFVAELMVFIGFATSDAYSPTFRVIIVFLAAIGVILTPIYLLSMLREILYGPENKELEEHHALVDAEPREVFIIASLLVPIIGIGLYPKVATTIYDATTNKLTALVRN 501          
BLAST of CV712684 vs. ExPASy Swiss-Prot
Match: NU4C2_SYNP2 (NAD(P)H-quinone oxidoreductase chain 4 2 OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=ndhD2 PE=3 SV=1)

HSP 1 Score: 241.506 bits (615), Expect = 3.634e-63
Identity = 120/231 (51.95%), Postives = 166/231 (71.86%), Query Frame = 2
Query:    2 IRINMELLPHAHSIFSPWFMIVGTVQIIYAASTSPGQRNLKKRIAYSSVSHMGFIILGIGSITDTGLNGAVLQIISHGLISAALFFLAGTSYDRIRFAYLDEMGGLAIPIPKIFTLFSILSMASLALPGMSGFVAELIVFFGIITSQKFFLMPKIVITFVMAIGMILTPIYSLSMLRQMFYGYKLFN-APNSYFFDSGPRELFVLISILLPVIGIGIYPDFVLSLSADKAE 691
            +R+N  +LP AH++F P  +I+G V I+YAA TS  QRNLK++IAYSS+SHMGF+++G+ S TD G +GA+LQ+ISHGLI A+LFF+ G +YDR     LDEMGG+   + KIF +++  SMASLALPGMSGFVAEL+VF G  TS  +    +++I F+ A+G+ILTPIY LSMLR++ YG +      +    D+ PRE+FV+  +L+P+IGIG+YP  V  + A   E
Sbjct:  263 LRMNAGMLPDAHALFGPVLVILGVVNIVYAALTSFAQRNLKRKIAYSSISHMGFVLIGMASFTDLGTSGAMLQMISHGLIGASLFFMVGATYDRTHTLMLDEMGGVGKKMKKIFAMWTTCSMASLALPGMSGFVAELMVFVGFATSDAYSPTFRVIIVFLAAVGVILTPIYLLSMLREILYGPENKELVAHEKLIDAEPREVFVIACLLIPIIGIGLYPKAVTQIYASTTE 493          
The following BLAST results are available for this feature:
BLAST of CV712684 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 325
Match NameE-valueIdentityDescription
NU4C_CHAVU5.059e-7359.38NAD(P)H-quinone oxidoreductase chain 4, chloroplas... [more]
NU4C_MESVI5.788e-6955.88NAD(P)H-quinone oxidoreductase chain 4, chloroplas... [more]
NU4C_ACAM19.241e-6753.62NAD(P)H-quinone oxidoreductase chain 4 OS=Acaryoch... [more]
NU4C2_SYNJA1.207e-6651.91NAD(P)H-quinone oxidoreductase chain 4 2 OS=Synech... [more]
NU4C2_ANASP1.576e-6655.56NAD(P)H-quinone oxidoreductase chain 4-2 OS=Anabae... [more]
NU4C1_ANAVT1.576e-6655.56NAD(P)H-quinone oxidoreductase chain 4 1 OS=Anabae... [more]
NU4C2_SYNJB3.883e-6551.06NAD(P)H-quinone oxidoreductase chain 4 2 OS=Synech... [more]
NU4C1_THEEB7.322e-6452.44NAD(P)H-quinone oxidoreductase chain 4 1 OS=Thermo... [more]
NU4C1_MICAN7.322e-6450.63NAD(P)H-quinone oxidoreductase chain 4 1 OS=Microc... [more]
NU4C2_SYNP23.634e-6351.95NAD(P)H-quinone oxidoreductase chain 4 2 OS=Synech... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001M02_r Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001M02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712684 ID=CV712684; Name=CV712684; organism=Citrus sinensis; type=EST; length=746bp
GATTCGAATCAATATGGAACTATTACCGCACGCTCATTCTATATTTTCCC
CCTGGTTCATGATAGTAGGTACCGTGCAAATAATTTATGCAGCTTCAACA
TCTCCCGGCCAACGGAATTTAAAAAAAAGAATAGCCTATTCCTCTGTATC
TCATATGGGTTTCATAATTCTAGGAATAGGCTCGATAACCGATACAGGTC
TCAATGGAGCCGTTTTACAAATAATTTCTCATGGGTTGATTAGTGCTGCA
CTTTTTTTCTTGGCAGGAACGAGTTATGATAGAATACGTTTTGCTTATCT
AGACGAAATGGGCGGACTAGCTATACCAATTCCAAAGATCTTCACGCTAT
TCAGTATCTTATCGATGGCCTCCCTTGCATTACCCGGCATGAGTGGTTTT
GTTGCAGAATTGATAGTATTTTTTGGAATAATTACCAGCCAAAAATTTTT
TTTAATGCCAAAAATAGTAATCACTTTTGTAATGGCAATTGGAATGATAT
TAACTCCTATTTATTCATTATCTATGTTACGGCAAATGTTCTATGGGTAC
AAGCTATTTAATGCCCCAAACTCTTATTTTTTTGATTCTGGACCACGGGA
GTTATTTGTTTTGATCTCGATTCTTCTACCCGTAATAGGTATTGGTATTT
ATCCCGATTTCGTTCTCTCACTATCAGCGGACAAGGCCGAAGCTATTATA
TCGAATTTTTTTTTGTAGATAGTTTTCATGACTAANAAAAATCAAA
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