CV712684
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CV712684 vs. ExPASy Swiss-Prot
Match: NU4C_CHAVU (NAD(P)H-quinone oxidoreductase chain 4, chloroplastic OS=Chara vulgaris GN=ndhD PE=3 SV=1) HSP 1 Score: 274.248 bits (700), Expect = 5.059e-73 Identity = 133/224 (59.38%), Postives = 178/224 (79.46%), Query Frame = 2 Query: 2 IRINMELLPHAHSIFSPWFMIVGTVQIIYAASTSPGQRNLKKRIAYSSVSHMGFIILGIGSITDTGLNGAVLQIISHGLISAALFFLAGTSYDRIRFAYLDEMGGLAIPIPKIFTLFSILSMASLALPGMSGFVAELIVFFGIITSQKFFLMPKIVITFVMAIGMILTPIYSLSMLRQMFYGYKLFNAPNSYFFDSGPRELFVLISILLPVIGIGIYPDFVLSL 673 IRINM L P+AH+ F+PW +I+GTVQIIYAAS Q+NLK+RIAYSS+SHMGF+++GI S T+ GL+GA+ Q+ISHGLI A+LFFLAGT+YDRIR L EMGG+A+ +PK+F++F+ S+ASLALP MSGFVAE+++F GII+S + + I A+G+ILTPIY LSMLRQMFYG F+ + F DSGPRE+F+++S+ +PVI IG+YP+ +LS+ Sbjct: 262 IRINMTLFPNAHAYFAPWLVILGTVQIIYAASVCLSQKNLKRRIAYSSISHMGFVLIGICSFTNIGLSGAICQMISHGLIGASLFFLAGTTYDRIRTVSLSEMGGIALKMPKMFSMFTGFSLASLALPTMSGFVAEMMIFLGIISSTFYSPSFRCFIILFQALGVILTPIYLLSMLRQMFYGVDTFHFESMSFIDSGPREVFIIVSLFIPVIIIGLYPNILLSI 485
BLAST of CV712684 vs. ExPASy Swiss-Prot
Match: NU4C_MESVI (NAD(P)H-quinone oxidoreductase chain 4, chloroplastic OS=Mesostigma viride GN=ndhD PE=3 SV=1) HSP 1 Score: 260.766 bits (665), Expect = 5.788e-69 Identity = 133/238 (55.88%), Postives = 177/238 (74.37%), Query Frame = 2 Query: 2 IRINMELLPHAHSIFSPWFMIVGTVQIIYAASTSPGQRNLKKRIAYSSVSHMGFIILGIGSITDTGLNGAVLQIISHGLISAALFFLAGTSYDRIRFAYLDEMGGLAIPIPKIFTLFSILSMASLALPGMSGFVAELIVFFGIITSQKFFLMPKIVITFVMAIGMILTPIYSLSMLRQMFYG---YKLFNAPNSYFFDSGPRELFVLISILLPVIGIGIYPDFVLSLSADKAEAIISN 706 IRINM +LP+AH F+P+ I+G + IIYAA TS QRN+K++IAYSS+SHMGF+++GI S TD GL+GA+LQ++SHGLI A+LFFLAGT+YDR R L++MGG+A +PKIF +F+ S+ASLALPGMSGFVAEL+VF G S + + + +ITF+ AIG+I+TPIY LSMLRQ+FYG KL N D+ RE+F++ +L+PVIGIGIYP + + K AII + Sbjct: 261 IRINMNMLPNAHIYFAPYLAIIGVINIIYAALTSFAQRNIKRKIAYSSISHMGFVLIGISSFTDIGLSGAMLQMVSHGLIGASLFFLAGTTYDRTRTLILEDMGGIAKYMPKIFAMFTTCSLASLALPGMSGFVAELMVFLGFANSNAYSIEFRGIITFLEAIGIIVTPIYLLSMLRQVFYGSENLKLLKVNN--LIDASAREIFIISCLLVPVIGIGIYPRILTQIYDLKTNAIIEH 496
BLAST of CV712684 vs. ExPASy Swiss-Prot
Match: NU4C_ACAM1 (NAD(P)H-quinone oxidoreductase chain 4 OS=Acaryochloris marina (strain MBIC 11017) GN=ndhD PE=3 SV=1) HSP 1 Score: 253.447 bits (646), Expect = 9.241e-67 Identity = 126/235 (53.62%), Postives = 173/235 (73.62%), Query Frame = 2 Query: 2 IRINMELLPHAHSIFSPWFMIVGTVQIIYAASTSPGQRNLKKRIAYSSVSHMGFIILGIGSITDTGLNGAVLQIISHGLISAALFFLAGTSYDRIRFAYLDEMGGLAIPIPKIFTLFSILSMASLALPGMSGFVAELIVFFGIITSQKFFLMPKIVITFVMAIGMILTPIYSLSMLRQMFYGYKLFN-APNSYFFDSGPRELFVLISILLPVIGIGIYPDFVLSLSADKAEAIIS 703 IR+N+ELLP AH+ F+P +I+G V IIYAA TS QRNLK++IAYSS+SHMGF+++GI S TD G++GAVLQ++SHGLI A+LFFL G +YDR L+EMGG+A +PKIF +F+ SMASLALPGMSGFVAEL+VF G+ TS + L ++ + + IG+ILTPIY LSMLR++FYG + + D+ PRE+FV+ +L+P+IGIG+YP + + K +++ Sbjct: 265 IRMNVELLPDAHAYFAPALIILGVVNIIYAALTSFAQRNLKRKIAYSSISHMGFVLIGIASFTDLGMSGAVLQMVSHGLIGASLFFLVGATYDRTHTLILEEMGGVAQNMPKIFAMFTTCSMASLALPGMSGFVAELMVFVGLATSDAYSLAFRVPVVILAGIGVILTPIYLLSMLREIFYGPENKELTSHEKLVDAEPREIFVIACLLVPIIGIGLYPKIITQIYDAKTTQLVA 499
BLAST of CV712684 vs. ExPASy Swiss-Prot
Match: NU4C2_SYNJA (NAD(P)H-quinone oxidoreductase chain 4 2 OS=Synechococcus sp. (strain JA-3-3Ab) GN=ndhD2 PE=3 SV=1) HSP 1 Score: 253.062 bits (645), Expect = 1.207e-66 Identity = 122/235 (51.91%), Postives = 178/235 (75.74%), Query Frame = 2 Query: 2 IRINMELLPHAHSIFSPWFMIVGTVQIIYAASTSPGQRNLKKRIAYSSVSHMGFIILGIGSITDTGLNGAVLQIISHGLISAALFFLAGTSYDRIRFAYLDEMGGLAIPIPKIFTLFSILSMASLALPGMSGFVAELIVFFGIITSQKFFLMPKIVITFVMAIGMILTPIYSLSMLRQMFYGYKLFN-APNSYFFDSGPRELFVLISILLPVIGIGIYPDFVLSLSADKAEAIIS 703 +R+N+ +LP AH F+P +++G V II+AA TS QRNLK++IAYSS+SHMGF+++GIGS+T+ G++GA+LQ+ISHGLI A+LFFL G +YDR L+EMGG+ + +PKIF++F+ S+ASLALPGMSGFVAEL+VF G+ T+ + L ++V+ F+ A+G+ILTPIY LSMLRQ+F+G + + D+ PRE+F++ +L+P+IGIG+YP V SL A+++ Sbjct: 278 MRMNVGMLPDAHLYFAPVLIVLGVVNIIFAALTSFAQRNLKRKIAYSSISHMGFVLIGIGSLTEIGMSGAMLQMISHGLIGASLFFLVGATYDRTHTLELEEMGGVGLKMPKIFSMFTACSLASLALPGMSGFVAELMVFIGMATTDAYSLPFRLVVVFLAAVGVILTPIYLLSMLRQIFFGPENKELTEHEELVDAEPREVFIIACLLIPIIGIGLYPKLVTSLYDQSTNALVA 512
BLAST of CV712684 vs. ExPASy Swiss-Prot
Match: NU4C2_ANASP (NAD(P)H-quinone oxidoreductase chain 4-2 OS=Anabaena sp. (strain PCC 7120) GN=ndhD2 PE=3 SV=1) HSP 1 Score: 252.677 bits (644), Expect = 1.576e-66 Identity = 125/225 (55.56%), Postives = 166/225 (73.78%), Query Frame = 2 Query: 2 IRINMELLPHAHSIFSPWFMIVGTVQIIYAASTSPGQRNLKKRIAYSSVSHMGFIILGIGSITDTGLNGAVLQIISHGLISAALFFLAGTSYDRIRFAYLDEMGGLAIPIPKIFTLFSILSMASLALPGMSGFVAELIVFFGIITSQKFFLMPKIVITFVMAIGMILTPIYSLSMLRQMFYGYKLFN-APNSYFFDSGPRELFVLISILLPVIGIGIYPDFVLSL 673 IR+N +LP AH+ F+P +++G V IIYAA TS QRNLK++IAYSS+SHMGF+I+G S TD GL+GAVLQ++SHGLI A+LFFL G +YDR LDEMGG+ +PKIF +F+ SMASLALPGMSGFVAEL+VF G TS + K+++ F+MA+G+ILTPIY LSMLR++FYG + + D+ PRE+FV+ +L+P+IGIG YP + + Sbjct: 263 IRMNAGILPDAHAYFAPVLVVLGVVNIIYAALTSFAQRNLKRKIAYSSISHMGFVIIGFASFTDLGLSGAVLQMVSHGLIGASLFFLVGATYDRTHTLMLDEMGGVGKRMPKIFAMFTACSMASLALPGMSGFVAELMVFVGFATSDAYSSTFKVIVVFLMAVGVILTPIYLLSMLREIFYGKENEELVSHQQLIDAEPREVFVIACLLVPIIGIGFYPKLLTQM 487
BLAST of CV712684 vs. ExPASy Swiss-Prot
Match: NU4C1_ANAVT (NAD(P)H-quinone oxidoreductase chain 4 1 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=ndhD1 PE=3 SV=1) HSP 1 Score: 252.677 bits (644), Expect = 1.576e-66 Identity = 125/225 (55.56%), Postives = 166/225 (73.78%), Query Frame = 2 Query: 2 IRINMELLPHAHSIFSPWFMIVGTVQIIYAASTSPGQRNLKKRIAYSSVSHMGFIILGIGSITDTGLNGAVLQIISHGLISAALFFLAGTSYDRIRFAYLDEMGGLAIPIPKIFTLFSILSMASLALPGMSGFVAELIVFFGIITSQKFFLMPKIVITFVMAIGMILTPIYSLSMLRQMFYGYKLFN-APNSYFFDSGPRELFVLISILLPVIGIGIYPDFVLSL 673 IR+N +LP AH+ F+P +++G V IIYAA TS QRNLK++IAYSS+SHMGF+I+G S TD GL+GAVLQ++SHGLI A+LFFL G +YDR LDEMGG+ +PKIF +F+ SMASLALPGMSGFVAEL+VF G TS + K+++ F+MA+G+ILTPIY LSMLR++FYG + + D+ PRE+FV+ +L+P+IGIG YP + + Sbjct: 263 IRMNAGILPDAHAYFAPVLVVLGVVNIIYAALTSFAQRNLKRKIAYSSISHMGFVIIGFASFTDLGLSGAVLQMVSHGLIGASLFFLVGATYDRTHTLMLDEMGGVGKRMPKIFAMFTACSMASLALPGMSGFVAELMVFVGFATSDAYSSTFKVIVVFLMAVGVILTPIYLLSMLREIFYGKENEELVSHQQLIDAEPREVFVIACLLVPIIGIGFYPKLLTQM 487
BLAST of CV712684 vs. ExPASy Swiss-Prot
Match: NU4C2_SYNJB (NAD(P)H-quinone oxidoreductase chain 4 2 OS=Synechococcus sp. GN=ndhD2 PE=3 SV=1) HSP 1 Score: 248.054 bits (632), Expect = 3.883e-65 Identity = 120/235 (51.06%), Postives = 176/235 (74.89%), Query Frame = 2 Query: 2 IRINMELLPHAHSIFSPWFMIVGTVQIIYAASTSPGQRNLKKRIAYSSVSHMGFIILGIGSITDTGLNGAVLQIISHGLISAALFFLAGTSYDRIRFAYLDEMGGLAIPIPKIFTLFSILSMASLALPGMSGFVAELIVFFGIITSQKFFLMPKIVITFVMAIGMILTPIYSLSMLRQMFYGYKLFN-APNSYFFDSGPRELFVLISILLPVIGIGIYPDFVLSLSADKAEAIIS 703 +R+N +LP AH F+P +++G V II+AA TS QRNLK++IA SS+SHMGF+++GIGS+T+ G++GA+LQ+ISHGLI A+LFFL G +YDR L+EMGG+ + +PKIF++F+ S+ASLALPGMSGFVAE++VF G+ T+ + L ++V+ F+ A+G+ILTPIY LSMLRQ+F+G + + D+ PRE+F++ +L+P+IGIG+YP V SL A+++ Sbjct: 278 MRMNAGMLPDAHLYFAPVLIVLGVVNIIFAALTSFAQRNLKRKIACSSISHMGFVLIGIGSLTEIGMSGAMLQMISHGLIGASLFFLVGATYDRTHTLELEEMGGVGLKMPKIFSMFTACSLASLALPGMSGFVAEIMVFIGMATTDAYSLPFRLVVVFLAAVGVILTPIYLLSMLRQIFFGPENKELTEHEELVDAEPREVFIIACLLIPIIGIGLYPKLVTSLYDQSTNALVA 512
BLAST of CV712684 vs. ExPASy Swiss-Prot
Match: NU4C1_THEEB (NAD(P)H-quinone oxidoreductase chain 4 1 OS=Thermosynechococcus elongatus (strain BP-1) GN=ndhD1 PE=3 SV=2) HSP 1 Score: 243.817 bits (621), Expect = 7.322e-64 Identity = 118/225 (52.44%), Postives = 169/225 (75.11%), Query Frame = 2 Query: 2 IRINMELLPHAHSIFSPWFMIVGTVQIIYAASTSPGQRNLKKRIAYSSVSHMGFIILGIGSITDTGLNGAVLQIISHGLISAALFFLAGTSYDRIRFAYLDEMGGLAIPIPKIFTLFSILSMASLALPGMSGFVAELIVFFGIITSQKFFLMPKIVITFVMAIGMILTPIYSLSMLRQMFYGYKLFN-APNSYFFDSGPRELFVLISILLPVIGIGIYPDFVLSL 673 IR+N+++LP AH+ F+P +I+G V IIYAA TS QRNLK++IAYSS+SH+GF+++GI S T+ G++GAVLQ++SHGLI A+LFFL G +YDR L+EMGG+ + KIF +F+ S+ASLALPGMSGFVAEL+VF G TS + L ++++ F+ A+G+ILTPIY LSMLR++FYG + + D+ PRE+F++ +L+P+IGIG+YP + + Sbjct: 263 IRMNVDMLPAAHAKFAPVLVILGVVNIIYAALTSYAQRNLKRKIAYSSISHIGFVLIGIASFTNLGMSGAVLQMVSHGLIGASLFFLVGATYDRTHTLILEEMGGVGQKMKKIFAMFTACSLASLALPGMSGFVAELMVFIGFATSDAYSLPFRVIVVFLAAVGVILTPIYLLSMLREIFYGPENKELVEHEALVDAEPREVFIIACLLVPIIGIGLYPKLLTQI 487
BLAST of CV712684 vs. ExPASy Swiss-Prot
Match: NU4C1_MICAN (NAD(P)H-quinone oxidoreductase chain 4 1 OS=Microcystis aeruginosa (strain NIES-843) GN=ndhD1 PE=3 SV=1) HSP 1 Score: 243.817 bits (621), Expect = 7.322e-64 Identity = 121/239 (50.63%), Postives = 174/239 (72.80%), Query Frame = 2 Query: 2 IRINMELLPHAHSIFSPWFMIVGTVQIIYAASTSPGQRNLKKRIAYSSVSHMGFIILGIGSITDTGLNGAVLQIISHGLISAALFFLAGTSYDRIRFAYLDEMGGLAIPIPKIFTLFSILSMASLALPGMSGFVAELIVFFGIITSQKFFLMPKIVITFVMAIGMILTPIYSLSMLRQMFYGYKLFNAPNSY-FFDSGPRELFVLISILLPVIGIGIYPDFVLSL---SADKAEAIISN 706 +R+NM +LP AH++F+P +I+G V IIYAA TS QRNLK++IAYSS+SHMGF+++G+ S TD G +GA+LQ+ISHGLI A+LFF+ G +YDR LDEMGG+ + K+F +++ S+ASLALPGMSGFVAEL+VF G TS + +++I F+ AIG+ILTPIY LSMLR++ YG + + D+ PRE+F++ S+L+P+IGIG+YP ++ + +K A++ N Sbjct: 263 LRMNMGMLPDAHAVFAPVLVILGVVNIIYAALTSFAQRNLKRKIAYSSISHMGFVLIGMASFTDIGTSGAMLQMISHGLIGASLFFMVGCTYDRTHTLMLDEMGGVGKKMKKVFAMWTTCSLASLALPGMSGFVAELMVFIGFATSDAYSPTFRVIIVFLAAIGVILTPIYLLSMLREILYGPENKELEEHHALVDAEPREVFIIASLLVPIIGIGLYPKVATTIYDATTNKLTALVRN 501
BLAST of CV712684 vs. ExPASy Swiss-Prot
Match: NU4C2_SYNP2 (NAD(P)H-quinone oxidoreductase chain 4 2 OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=ndhD2 PE=3 SV=1) HSP 1 Score: 241.506 bits (615), Expect = 3.634e-63 Identity = 120/231 (51.95%), Postives = 166/231 (71.86%), Query Frame = 2 Query: 2 IRINMELLPHAHSIFSPWFMIVGTVQIIYAASTSPGQRNLKKRIAYSSVSHMGFIILGIGSITDTGLNGAVLQIISHGLISAALFFLAGTSYDRIRFAYLDEMGGLAIPIPKIFTLFSILSMASLALPGMSGFVAELIVFFGIITSQKFFLMPKIVITFVMAIGMILTPIYSLSMLRQMFYGYKLFN-APNSYFFDSGPRELFVLISILLPVIGIGIYPDFVLSLSADKAE 691 +R+N +LP AH++F P +I+G V I+YAA TS QRNLK++IAYSS+SHMGF+++G+ S TD G +GA+LQ+ISHGLI A+LFF+ G +YDR LDEMGG+ + KIF +++ SMASLALPGMSGFVAEL+VF G TS + +++I F+ A+G+ILTPIY LSMLR++ YG + + D+ PRE+FV+ +L+P+IGIG+YP V + A E Sbjct: 263 LRMNAGMLPDAHALFGPVLVILGVVNIVYAALTSFAQRNLKRKIAYSSISHMGFVLIGMASFTDLGTSGAMLQMISHGLIGASLFFMVGATYDRTHTLMLDEMGGVGKKMKKIFAMWTTCSMASLALPGMSGFVAELMVFVGFATSDAYSPTFRVIIVFLAAVGVILTPIYLLSMLREILYGPENKELVAHEKLIDAEPREVFVIACLLIPIIGIGLYPKAVTQIYASTTE 493 The following BLAST results are available for this feature:
BLAST of CV712684 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 325
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Sequences
The
following sequences are available for this feature:
EST sequence >CV712684 ID=CV712684; Name=CV712684; organism=Citrus sinensis; type=EST; length=746bpback to top |