CV712678

Overview
NameCV712678
Unique NameCV712678
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length759
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV712678 vs. ExPASy Swiss-Prot
Match: OLEO3_MAIZE (Oleosin Zm-II OS=Zea mays GN=OLE18 PE=1 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.439e-22
Identity = 55/128 (42.97%), Postives = 76/128 (59.38%), Query Frame = 3
Query:  144 GPSASKVLAVLAMLPLGGTFLALAGVALTGTIIGLCVTTPLFIIFSXXXXXXXXXXXXXXTGFLTSGAFGLTALSSLSWVLSILRQKTGSVPEMADQAKKRVAGMADYVGQKTKEVGQDIQSKVHEAG 527
            GP+AS+ L V  + PLGG  L L+G+ALT +++GL V TP+F+IFS               GFLTSGA GL  LSSL+ + +  RQ     P+  ++A++R+A  A   G KT + GQ IQ +  EAG
Sbjct:   43 GPTASQALTVATLFPLGGLLLVLSGLALTASVVGLAVATPVFLIFSPVLVPAALLIGTAVMGFLTSGALGLGGLSSLTCLANTARQAFQRTPDYVEEARRRMAEAAAQAGHKTAQAGQAIQGRAQEAG 170          
BLAST of CV712678 vs. ExPASy Swiss-Prot
Match: OLEO2_ORYSJ (Oleosin 18 kDa OS=Oryza sativa subsp. japonica GN=OLE18 PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.879e-22
Identity = 64/173 (36.99%), Postives = 88/173 (50.87%), Query Frame = 3
Query:   48 MAERDRXXXXXXXXXXXXXGKSLMGQRGAAGG---------GPSASKVLAVLAMLPLGGTFLALAGVALTGTIIGLCVTTPLFIIFSXXXXXXXXXXXXXXTGFLTSGAFGLTALSSLSWVLSILRQKTGSVPEMADQAKKRVAGMADYVGQKTKEVGQDIQSKVHEAGGKTG 539
            MA+RDR             G+    QRG  G           PSAS+ L V  + PLGG  L L+G+AL  +++GL V TP+F+IFS               GFLTSGA GL  LSSL+++ +  RQ     P+  +QA++R+A  A + G KT + G  IQ +  +AG   G
Sbjct:    1 MADRDRA------------GQYYQQQRGQVGETVKGILPEKAPSASQALTVATLFPLGGLLLVLSGLALAASVVGLAVATPVFLIFSPVLVPAALLIGLAVAGFLTSGALGLGGLSSLTFLANTARQAFQRTPDYVEQARRRMAEAAAHAGHKTAQAGHAIQGRADQAGTGAG 161          
BLAST of CV712678 vs. ExPASy Swiss-Prot
Match: OLEO2_ORYSI (Oleosin 18 kDa OS=Oryza sativa subsp. indica GN=OLE18 PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.879e-22
Identity = 64/173 (36.99%), Postives = 88/173 (50.87%), Query Frame = 3
Query:   48 MAERDRXXXXXXXXXXXXXGKSLMGQRGAAGG---------GPSASKVLAVLAMLPLGGTFLALAGVALTGTIIGLCVTTPLFIIFSXXXXXXXXXXXXXXTGFLTSGAFGLTALSSLSWVLSILRQKTGSVPEMADQAKKRVAGMADYVGQKTKEVGQDIQSKVHEAGGKTG 539
            MA+RDR             G+    QRG  G           PSAS+ L V  + PLGG  L L+G+AL  +++GL V TP+F+IFS               GFLTSGA GL  LSSL+++ +  RQ     P+  +QA++R+A  A + G KT + G  IQ +  +AG   G
Sbjct:    1 MADRDRA------------GQYYQQQRGQVGETVKGILPEKAPSASQALTVATLFPLGGLLLVLSGLALAASVVGLAVATPVFLIFSPVLVPAALLIGLAVAGFLTSGALGLGGLSSLTFLANTARQAFQRTPDYVEQARRRMAEAAAHAGHKTAQAGHAIQGRADQAGTGAG 161          
BLAST of CV712678 vs. ExPASy Swiss-Prot
Match: OLEO1_PRUDU (Oleosin 1 OS=Prunus dulcis GN=OLE1 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.594e-13
Identity = 39/117 (33.33%), Postives = 61/117 (52.14%), Query Frame = 3
Query:  147 PSASKVLAVLAMLPLGGTFLALAGVALTGTIIGLCVTTPLFIIFSXXXXXXXXXXXXXXTGFLTSGAFGLTALSSLSWVLSILRQKTGSVPEMADQAKKRVAGMADYVGQKTKEVGQ 497
            P + +V      +  GG+ L L+G+ L GT+I L + TPL +IFS               GFLTSG FG+ A++ LSW+   +  K     +  DQA+ ++AG A  +  + ++ GQ
Sbjct:   21 PRSYQVAKAATAVTAGGSLLVLSGLVLAGTVIALTIATPLLVIFSPVLVPALITVALITMGFLTSGGFGVAAVTVLSWIYKYVTGKQPPGADQLDQARHKLAGKARDIKDRAEQFGQ 137          
BLAST of CV712678 vs. ExPASy Swiss-Prot
Match: OLEO3_ARATH (Oleosin 14.9 kDa OS=Arabidopsis thaliana GN=OL3 PE=2 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 1.949e-11
Identity = 36/101 (35.64%), Postives = 54/101 (53.47%), Query Frame = 3
Query:  147 PSASKVLAVLAMLPLGGTFLALAGVALTGTIIGLCVTTPLFIIFSXXXXXXXXXXXXXXTGFLTSGAFGLTALSSLSWVLSILRQKTGSVPEMADQAKKRV 449
            P A +++     +  GG+ L L+G+ L GT+I L V TPL +IFS              TGFL SG FG+ A+++ SW   + R  TGS  +  + A+ +V
Sbjct:   22 PKARQMVKAATAVTAGGSLLVLSGLTLAGTVIALTVATPLLVIFSPVLVPAVVTVALIITGFLASGGFGIAAITAFSW---LYRHMTGSGSDKIENARMKV 119          
BLAST of CV712678 vs. ExPASy Swiss-Prot
Match: OLEO1_MAIZE (Oleosin Zm-I OS=Zea mays GN=OLE16 PE=2 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 5.671e-11
Identity = 39/113 (34.51%), Postives = 55/113 (48.67%), Query Frame = 3
Query:  192 GGTFLALAGVALTGTIIGLCVTTPLFIIFSXXXXXXXXXXXXXXTGFLTSGAFGLTALSSLSWVLSILRQKTGSVPEMADQAKKRVAGMADYVGQKTKEVGQDIQSKVHEAGG 530
            GG+ L L+G+ L GT+I L V TP+ +IFS               GF+TSG  G+ ALS  SW+   L  K     +  D AK R+A        K ++V    Q ++ +A G
Sbjct:   50 GGSMLVLSGLILAGTVIALTVATPVLVIFSPVLVPAAIALALMAAGFVTSGGLGVAALSVFSWMYKYLTGKHPPAADQLDHAKARLA-------SKARDVKDAAQHRIDQAQG 155          
The following BLAST results are available for this feature:
BLAST of CV712678 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
OLEO3_MAIZE1.439e-2242.97Oleosin Zm-II OS=Zea mays GN=OLE18 PE=1 SV=1[more]
OLEO2_ORYSJ1.879e-2236.99Oleosin 18 kDa OS=Oryza sativa subsp. japonica GN=... [more]
OLEO2_ORYSI1.879e-2236.99Oleosin 18 kDa OS=Oryza sativa subsp. indica GN=OL... [more]
OLEO1_PRUDU1.594e-1333.33Oleosin 1 OS=Prunus dulcis GN=OLE1 PE=2 SV=1[more]
OLEO3_ARATH1.949e-1135.64Oleosin 14.9 kDa OS=Arabidopsis thaliana GN=OL3 PE... [more]
OLEO1_MAIZE5.671e-1134.51Oleosin Zm-I OS=Zea mays GN=OLE16 PE=2 SV=2[more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001L23_r Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001L23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712678 ID=CV712678; Name=CV712678; organism=Citrus sinensis; type=EST; length=759bp
ATTTACTGCTCGATATTTCTCTCTTTACTCTTGAATTAAGCATCTCAATG
GCTGAACGCGATCGCCCGCAGCCACACCAGCTTCAAGTGCACCCACAACA
GCACGGTAAGTCTCTTATGGGCCAAAGAGGAGCAGCAGGAGGAGGCCCTT
CAGCAAGCAAAGTTCTTGCAGTTTTGGCCATGCTGCCCCTCGGTGGAACC
TTTCTTGCTCTTGCCGGTGTCGCGCTGACTGGAACCATCATCGGGCTTTG
CGTCACCACTCCTCTCTTCATAATCTTCAGCCCCGTTATTGTCCCCGCCG
CCATTGTTCTTGCTCTTGCAGTGACTGGGTTTTTAACGTCGGGGGCTTTC
GGGCTGACGGCCTTGTCTTCGCTCTCGTGGGTCCTGAGCATATTGCGGCA
GAAGACTGGGTCGGTGCCGGAGATGGCGGACCAGGCGAAGAAGCGGGTGG
CGGGAATGGCGGATTATGTGGGCCAGAAGACTAAGGAAGTTGGGCAGGAT
ATTCAGAGTAAGGTTCATGAAGCAGGAGGGAAGACGGGGAGGACATAAAA
TGTTGATCTGATATGATCGGTTGATGGGGAAGACAATGTGTGGTTTCTTT
TTAGGGCTTTAGTGTTGGTTTTGTAGTTGTAATAAGTTTTGTGTATTTAG
TTGTAGGAGAGTCCGTACTCTGTTGTGGCTTGTGAGGTGCAAGGGTTTGG
CTCTTGGGCTTACTTGGAATGCAAGGCATTTGGTGCTTTTGTTTTTGGGT
TTAATTATC
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