CV712676

Overview
NameCV712676
Unique NameCV712676
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length632
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CV712676_ssr590 microsatellite CV712676_ssr590:590..601. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig9428 contig Csv1_Contig9428:613..1244. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV712676 vs. ExPASy Swiss-Prot
Match: 14336_ORYSJ (14-3-3-like protein GF14-F OS=Oryza sativa subsp. japonica GN=GF14F PE=1 SV=2)

HSP 1 Score: 149.058 bits (375), Expect = 1.810e-35
Identity = 73/92 (79.35%), Postives = 82/92 (89.13%), Query Frame = 3
Query:    3 AASTTAEAELSPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAISELDTLSEESYKDSTLIMQLLRDNLTLWTSDIPEDGGDEAQK 278
            +A   A A+L  THPIRLGLALNFSVFYYEI+NSP+RAC+LAKQAFD+AI+ELDTL EESYKDSTLIMQLLRDNLTLWTSD  EDGGDE ++
Sbjct:  160 SAQDIALADLPTTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDDAIAELDTLGEESYKDSTLIMQLLRDNLTLWTSDNAEDGGDEIKE 251          
BLAST of CV712676 vs. ExPASy Swiss-Prot
Match: RAD24_SCHPO (DNA damage checkpoint protein rad24 OS=Schizosaccharomyces pombe GN=rad24 PE=1 SV=2)

HSP 1 Score: 148.288 bits (373), Expect = 3.088e-35
Identity = 73/81 (90.12%), Postives = 78/81 (96.30%), Query Frame = 3
Query:    3 AASTTAEAELSPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAISELDTLSEESYKDSTLIMQLLRDNLTLWTSD 245
            AAS  A AEL+PTHPIRLGLALNFSVFYYEI+NSP+RAC+LAKQAFDEAISELD+LSEESYKDSTLIMQLLRDNLTLWTSD
Sbjct:  156 AASEIATAELAPTHPIRLGLALNFSVFYYEILNSPDRACYLAKQAFDEAISELDSLSEESYKDSTLIMQLLRDNLTLWTSD 236          
BLAST of CV712676 vs. ExPASy Swiss-Prot
Match: 14331_SOLTU (14-3-3-like protein OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 3.088e-35
Identity = 72/92 (78.26%), Postives = 82/92 (89.13%), Query Frame = 3
Query:    3 AASTTAEAELSPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAISELDTLSEESYKDSTLIMQLLRDNLTLWTSDIPEDGGDEAQK 278
            +A   A AEL+PTHPIRLGLALNFSVFYYEI+NSP+RAC+LAKQAFD+AI+ELDTL EESYKDSTLIMQLLRDNLTLWTSD  +D  DE ++
Sbjct:  157 SAQDIALAELTPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDDAIAELDTLGEESYKDSTLIMQLLRDNLTLWTSDTTDDAEDEIRE 248          
BLAST of CV712676 vs. ExPASy Swiss-Prot
Match: 14311_ARATH (14-3-3-like protein GF14 omicron OS=Arabidopsis thaliana GN=GRF11 PE=2 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 3.088e-35
Identity = 71/86 (82.56%), Postives = 81/86 (94.19%), Query Frame = 3
Query:    3 AASTTAEAELSPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAISELDTLSEESYKDSTLIMQLLRDNLTLWTSDIPEDG 260
            AA+++A  ELS THPIRLGLALNFSVFYYEI+NSPERACHLAK+AFDEAI+ELD+L+E+SYKDSTLIMQLLRDNLTLWTSD+ E G
Sbjct:  155 AATSSASTELSTTHPIRLGLALNFSVFYYEILNSPERACHLAKRAFDEAIAELDSLNEDSYKDSTLIMQLLRDNLTLWTSDLEEGG 240          
BLAST of CV712676 vs. ExPASy Swiss-Prot
Match: 14335_ARATH (14-3-3-like protein GF14 upsilon OS=Arabidopsis thaliana GN=GRF5 PE=1 SV=2)

HSP 1 Score: 147.902 bits (372), Expect = 4.033e-35
Identity = 76/105 (72.38%), Postives = 86/105 (81.90%), Query Frame = 3
Query:    3 AASTTAEAELSPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAISELDTLSEESYKDSTLIMQLLRDNLTLWTSDIPEDGGD-------EAQKMDISAK 296
            +A   A A+L+PTHPIRLGLALNFSVFYYEI+NS +RAC LAKQAFDEAISELDTL EESYKDSTLIMQLLRDNLTLWTSD+ ++ GD       E QK+D  A+
Sbjct:  159 SAQDIALADLAPTHPIRLGLALNFSVFYYEILNSSDRACSLAKQAFDEAISELDTLGEESYKDSTLIMQLLRDNLTLWTSDLNDEAGDDIKEAPKEVQKVDEQAQ 263          
BLAST of CV712676 vs. ExPASy Swiss-Prot
Match: 14337_ARATH (14-3-3-like protein GF14 nu OS=Arabidopsis thaliana GN=GRF7 PE=1 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 5.267e-35
Identity = 75/93 (80.65%), Postives = 82/93 (88.17%), Query Frame = 3
Query:    3 AASTTAEAELSPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAISELDTLSEESYKDSTLIMQLLRDNLTLWTSDI-PEDGGDEAQK 278
            +A   A A+L+PTHPIRLGLALNFSVFYYEI+NSP+RAC LAKQAFDEAISELDTL EESYKDSTLIMQLLRDNLTLW SDI  E GGDE ++
Sbjct:  157 SAQDIALADLAPTHPIRLGLALNFSVFYYEILNSPDRACSLAKQAFDEAISELDTLGEESYKDSTLIMQLLRDNLTLWNSDINDEAGGDEIKE 249          
BLAST of CV712676 vs. ExPASy Swiss-Prot
Match: 1433A_HORVU (14-3-3-like protein A OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 6.879e-35
Identity = 72/92 (78.26%), Postives = 82/92 (89.13%), Query Frame = 3
Query:    3 AASTTAEAELSPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAISELDTLSEESYKDSTLIMQLLRDNLTLWTSDIPEDGGDEAQK 278
            +A   A A+L  THPIRLGLALNFSVFYYEI+NSP+RAC+LAKQAFDEAI+ELD+L EESYKDSTLIMQLLRDNLTLWTSD  E+GGDE ++
Sbjct:  160 SAQDIALADLPTTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEAIAELDSLGEESYKDSTLIMQLLRDNLTLWTSDNAEEGGDEIKE 251          
BLAST of CV712676 vs. ExPASy Swiss-Prot
Match: 1433_SPIOL (14-3-3-like protein (Fragment) OS=Spinacia oleracea PE=2 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 8.984e-35
Identity = 71/89 (79.78%), Postives = 80/89 (89.89%), Query Frame = 3
Query:    3 AASTTAEAELSPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAISELDTLSEESYKDSTLIMQLLRDNLTLWTSDIPEDGGDE 269
            AA   A AEL+PTHPIRLGLALNFSVFYYEI+NSP+RAC+LAKQAF EAI+ELDTL E+SYKDSTLIMQLLRDNLTLWTSD+ ++  DE
Sbjct:  113 AAQDIANAELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFVEAIAELDTLGEDSYKDSTLIMQLLRDNLTLWTSDMQDEAADE 201          
BLAST of CV712676 vs. ExPASy Swiss-Prot
Match: 1433_CHLRE (14-3-3-like protein OS=Chlamydomonas reinhardtii PE=2 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 8.984e-35
Identity = 73/99 (73.74%), Postives = 83/99 (83.84%), Query Frame = 3
Query:    3 AASTTAEAELSPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAISELDTLSEESYKDSTLIMQLLRDNLTLWTSDIPED-GGDEAQKMDISAK 296
            AA   A  +L PTHPIRLGLALNFSVFYYEI+NSPERACHLAKQAFDEAI+ELD+L EESYKDSTLIMQLLRDNLTLWTSD+ +   GD+ +  D+  +
Sbjct:  157 AAQDIALVDLPPTHPIRLGLALNFSVFYYEILNSPERACHLAKQAFDEAIAELDSLGEESYKDSTLIMQLLRDNLTLWTSDMQDPAAGDDREGADMKVE 255          
BLAST of CV712676 vs. ExPASy Swiss-Prot
Match: 1433E_SHEEP (14-3-3 protein epsilon OS=Ovis aries GN=YWHAE PE=1 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.173e-34
Identity = 72/89 (80.90%), Postives = 79/89 (88.76%), Query Frame = 3
Query:    3 AASTTAEAELSPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAISELDTLSEESYKDSTLIMQLLRDNLTLWTSDIPEDGGDE 269
            AAS  A  EL PTHPIRLGLALNFSVFYYEI+NSP+RAC LAK AFD+AI+ELDTLSEESYKDSTLIMQLLRDNLTLWTSD+  DG ++
Sbjct:  154 AASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFDDAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSDMQGDGEEQ 242          
The following BLAST results are available for this feature:
BLAST of CV712676 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 143
Match NameE-valueIdentityDescription
14336_ORYSJ1.810e-3579.3514-3-3-like protein GF14-F OS=Oryza sativa subsp. ... [more]
RAD24_SCHPO3.088e-3590.12DNA damage checkpoint protein rad24 OS=Schizosacch... [more]
14331_SOLTU3.088e-3578.2614-3-3-like protein OS=Solanum tuberosum PE=2 SV=1[more]
14311_ARATH3.088e-3582.5614-3-3-like protein GF14 omicron OS=Arabidopsis th... [more]
14335_ARATH4.033e-3572.3814-3-3-like protein GF14 upsilon OS=Arabidopsis th... [more]
14337_ARATH5.267e-3580.6514-3-3-like protein GF14 nu OS=Arabidopsis thalian... [more]
1433A_HORVU6.879e-3578.2614-3-3-like protein A OS=Hordeum vulgare PE=2 SV=1[more]
1433_SPIOL8.984e-3579.7814-3-3-like protein (Fragment) OS=Spinacia olerace... [more]
1433_CHLRE8.984e-3573.7414-3-3-like protein OS=Chlamydomonas reinhardtii P... [more]
1433E_SHEEP1.173e-3480.9014-3-3 protein epsilon OS=Ovis aries GN=YWHAE PE=1... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001L22_r Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001L22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712676 ID=CV712676; Name=CV712676; organism=Citrus sinensis; type=EST; length=632bp
AGGCAGCTTCTACTACCGCAGAAGCTGAATTGTCTCCTACCCACCCCATC
CGACTTGGTTTGGCCTTGAACTTCTCAGTTTTTTACTATGAGATTATGAA
CTCTCCTGAAAGGGCATGCCACCTTGCAAAGCAGGCCTTTGATGAAGCCA
TCTCAGAATTGGATACATTAAGTGAGGAATCTTACAAAGACAGCACGTTG
ATAATGCAGCTATTGAGGGACAACCTCACTCTTTGGACTTCTGACATACC
AGAGGATGGAGGTGATGAAGCCCAGAAAATGGACATCTCTGCTAAAGAGG
GTGAAGGTGAAGATTGAAGAAGCAGAGGTGGGTTTGTTTTCCTATTTTGG
AGCAGAGTTGCAATCTTTGTTGTTTTCTGTCCTCAGTGAACCAGCCAGGA
GCTTGGGAGCTCTAGCATATGATAGCAAGGAAGCTGCAATACCTTTATGA
CTCCCGGTGTTTTTCTTAGTTTACAAGAGACACTCAAGTACTGTTATTGT
GCTGTTCCTATAATGTGGGTGTTATCTTCACTGTCAAGAGTTTCATGATT
GGACTGCTTGTATCATTTGCATCCCAGAATCTTTTATATCTGCTGCTGCT
GATCAATTTGGACTTAGTGTTAAGACCAAAAA
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