CV712675

Overview
NameCV712675
Unique NameCV712675
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length641
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CV712675_ssr38 microsatellite CV712675_ssr38:38..49. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig9428 contig Csv1_Contig9428:610..1250. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CV712675 vs. ExPASy Swiss-Prot
Match: 1433X_MAIZE (14-3-3-like protein (Fragment) OS=Zea mays PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.811e-22
Identity = 51/59 (86.44%), Postives = 55/59 (93.22%), Query Frame = -3 
Query:  370 IMNSPERACHLAKQAFDEAISELDTLSEESYKDSTLIMQLLRDNLTLWTSDIPEDGGDE 546
            I+NSP+RAC+LAKQAFDEAISELD+L EESYKDSTLIMQLL DNLTLWTSD  EDGGDE
Sbjct:    1 ILNSPDRACNLAKQAFDEAISELDSLGEESYKDSTLIMQLLXDNLTLWTSDTNEDGGDE 59
[Close]
BLAST of CV712675 vs. ExPASy Swiss-Prot
Match: 1433G_SHEEP (14-3-3 protein gamma (Fragments) OS=Ovis aries GN=YWHAG PE=1 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.811e-22
Identity = 54/78 (69.23%), Postives = 61/78 (78.21%), Query Frame = -3 
Query:  376 LSPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAISELDTLSEESYKDSTLIMQLLRDNLTLWTSDIPEDGG 609
            + PTHPIRLGLALN+SVFYYEI             AFD+AI+ELDTL+E+SYKDSTLIMQLLRDNLTLWTSD  +D G
Sbjct:   92 MQPTHPIRLGLALNYSVFYYEIT------------AFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDQQDDDG 157
[Close]
BLAST of CV712675 vs. ExPASy Swiss-Prot
Match: 14338_ORYSJ (Putative 14-3-3-like protein GF14-H OS=Oryza sativa subsp. japonica GN=GF14H PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 5.840e-13
Identity = 36/66 (54.55%), Postives = 50/66 (75.76%), Query Frame = -3 
Query:  352 EIMNSPERACHLAKQAFDEAISELDTLSEESYKDSTLIMQLLRDNLTLWTSDIPEDGGDEAQKMDI 549
            EIMNSPERA  +AKQA DEA +E+++   E YKDS L+MQLL++NL LWTS++   GG+ ++  D+
Sbjct:  163 EIMNSPERASQVAKQALDEATAEINSAGVEGYKDSMLMMQLLKENLALWTSEL--TGGETSKDDDV 226
The following BLAST results are available for this feature:
BLAST of CV712675 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 143
Match NameE-valueIdentityDescription
1433X_MAIZE1.811e-2286.4414-3-3-like protein (Fragment) OS=Zea mays PE=3 SV... [more]
1433G_SHEEP1.811e-2269.2314-3-3 protein gamma (Fragments) OS=Ovis aries GN=... [more]
14338_ORYSJ5.840e-1354.55Putative 14-3-3-like protein GF14-H OS=Oryza sativ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS08_0001L22_f Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001L22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712675 ID=CV712675; Name=CV712675; organism=Citrus sinensis; type=EST; length=641bp
CCCCCTTTTTTTGGTCTTACACTAAGTCCAAATTGATCAGCAGCAGCAGA
TATAAAAGATTCTGGGATGCAAATGATACAAGCAGTCCAATCATGAAACT
CTTGACAGTGAAGATAACACCCACATTATAGGAACAGCACAATAACAGTA
CTTGAGTGTCTCTTGTAAACTAAGAAAAACACCGGGAGTCATAAAGGTAT
TGCAGCTTCCTTGCTATCATATGCTAGAGCTCCCAAGCTCCTGGCTGGTT
CACTGAGGACAGAAAACAACAAAGATTGCAACTCTGCTCCAAAATAGGAA
AACAAACCCACCTCTGCTTCTTCAATCTTCACCTTCACCCTCTTTAGCAG
AGATGTCCATTTTCTGGGCTTCATCACCTCCATCCTCTGGTATGTCAGAA
GTCCAAAGAGTGAGGTTGTCCCTCAATAGCTGCATTATCAACGTGCTGTC
TTTGTAAGATTCCTCACTTAATGTATCCAATTCTGAGATGGCTTCATCAA
AGGCCTGCTTTGCAAGGTGGCATGCCCTTTCAGGAGAGTTCATAATCTCA
TAGTAAAAAACTGAGAAGTTCAAGGCCAAACCAAGTCGGATGGGGTGGGT
AGGAGACAATTCAGCTTCTGCGGTAGTAGAAGCTGCCTCCT
back to top