CV712666

Overview
NameCV712666
Unique NameCV712666
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length759
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV712666 vs. ExPASy Swiss-Prot
Match: RL2_RICCK (50S ribosomal protein L2 OS=Rickettsia canadensis (strain McKiel) GN=rplB PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.913e-13
Identity = 36/72 (50.00%), Postives = 50/72 (69.44%), Query Frame = 2
Query:  158 RALRQFTLGKGKSAGRNSSGRITIFHRGGGSKRLQRRIDLKRTTSSI-GIVERVEYDPNRSSWIAPVRWIEG 370
            R  +  T G  K+ GRN+ GRIT +HRGGG K+L R ID KR    I  +VER+EYDPNR+++IA +++ +G
Sbjct:   28 RPFKSLTKGISKTGGRNNHGRITSWHRGGGHKKLYRIIDFKRNKIDISAVVERIEYDPNRTAFIALIKYEDG 99          
BLAST of CV712666 vs. ExPASy Swiss-Prot
Match: RL2_JANSC (50S ribosomal protein L2 OS=Jannaschia sp. (strain CCS1) GN=rplB PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.913e-13
Identity = 38/74 (51.35%), Postives = 51/74 (68.92%), Query Frame = 2
Query:  158 RALRQFTLGKGKSAGRNSSGRITIFHRGGGSKRLQRRIDLKRTTSSI-GIVERVEYDPNRSSWIAPVRWIEGVQ 376
            R ++  T G  K  GRN++GRIT   RGGG+KRL R +D KRT   +   VER+EYDPNR+++IA VR+ +G Q
Sbjct:   28 RPVKSLTEGLTKKGGRNNTGRITARRRGGGAKRLYRIVDFKRTKFDVSATVERIEYDPNRTAFIALVRYEDGEQ 101          
BLAST of CV712666 vs. ExPASy Swiss-Prot
Match: RL2_WOLPP (50S ribosomal protein L2 OS=Wolbachia pipientis subsp. Culex pipiens (strain wPip) GN=rplB PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.033e-12
Identity = 40/86 (46.51%), Postives = 54/86 (62.79%), Query Frame = 2
Query:  110 GNRMGTKQAMTKFKEVRALRQFTLGKGKSAGRNSSGRITIFHRGGGSKRLQRRIDLKRTTSSIGIVERVEYDPNRSSWIAPVRWIE 367
            G  + +K  ++K K  ++L     GK  S GRN+ GRIT  HRGGG K+  R ID KR  S  GIVE++EYDPNRS ++A + + E
Sbjct:   15 GTILISKIGLSKDKPEKSL---VFGKKSSGGRNNHGRITTRHRGGGHKKKYRVIDFKRNRSDQGIVEKIEYDPNRSGFLALISYKE 97          
BLAST of CV712666 vs. ExPASy Swiss-Prot
Match: RL2_RHOSK (50S ribosomal protein L2 OS=Rhodobacter sphaeroides (strain KD131 / KCTC 12085) GN=rplB PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.350e-12
Identity = 34/72 (47.22%), Postives = 53/72 (73.61%), Query Frame = 2
Query:  158 RALRQFTLGKGKSAGRNSSGRITIFHRGGGSKRLQRRIDLKRTTSSI-GIVERVEYDPNRSSWIAPVRWIEG 370
            R ++    G  K+ GRN++GR+T++H+GGG+KRL R +D KR    +  +VER+EYDPNR+++IA VR+ +G
Sbjct:   28 RPVKTLVEGLIKTGGRNNTGRVTMWHKGGGAKRLYRIVDFKRRKFDVPAVVERIEYDPNRTAFIALVRYEDG 99          
BLAST of CV712666 vs. ExPASy Swiss-Prot
Match: RL2_RHOS5 (50S ribosomal protein L2 OS=Rhodobacter sphaeroides (strain ATCC 17025 / ATH 2.4.3) GN=rplB PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.350e-12
Identity = 34/72 (47.22%), Postives = 53/72 (73.61%), Query Frame = 2
Query:  158 RALRQFTLGKGKSAGRNSSGRITIFHRGGGSKRLQRRIDLKRTTSSI-GIVERVEYDPNRSSWIAPVRWIEG 370
            R ++    G  K+ GRN++GR+T++H+GGG+KRL R +D KR    +  +VER+EYDPNR+++IA VR+ +G
Sbjct:   28 RPVKTLVEGLIKTGGRNNTGRVTMWHKGGGAKRLYRIVDFKRRKFDVPAVVERIEYDPNRTAFIALVRYEDG 99          
BLAST of CV712666 vs. ExPASy Swiss-Prot
Match: RL2_RHOS4 (50S ribosomal protein L2 OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=rplB PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.350e-12
Identity = 34/72 (47.22%), Postives = 53/72 (73.61%), Query Frame = 2
Query:  158 RALRQFTLGKGKSAGRNSSGRITIFHRGGGSKRLQRRIDLKRTTSSI-GIVERVEYDPNRSSWIAPVRWIEG 370
            R ++    G  K+ GRN++GR+T++H+GGG+KRL R +D KR    +  +VER+EYDPNR+++IA VR+ +G
Sbjct:   28 RPVKTLVEGLIKTGGRNNTGRVTMWHKGGGAKRLYRIVDFKRRKFDVPAVVERIEYDPNRTAFIALVRYEDG 99          
BLAST of CV712666 vs. ExPASy Swiss-Prot
Match: RL2_RHOS1 (50S ribosomal protein L2 OS=Rhodobacter sphaeroides (strain ATCC 17029 / ATH 2.4.9) GN=rplB PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.350e-12
Identity = 34/72 (47.22%), Postives = 53/72 (73.61%), Query Frame = 2
Query:  158 RALRQFTLGKGKSAGRNSSGRITIFHRGGGSKRLQRRIDLKRTTSSI-GIVERVEYDPNRSSWIAPVRWIEG 370
            R ++    G  K+ GRN++GR+T++H+GGG+KRL R +D KR    +  +VER+EYDPNR+++IA VR+ +G
Sbjct:   28 RPVKTLVEGLIKTGGRNNTGRVTMWHKGGGAKRLYRIVDFKRRKFDVPAVVERIEYDPNRTAFIALVRYEDG 99          
BLAST of CV712666 vs. ExPASy Swiss-Prot
Match: RL2_NITHX (50S ribosomal protein L2 OS=Nitrobacter hamburgensis (strain X14 / DSM 10229) GN=rplB PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.350e-12
Identity = 40/87 (45.98%), Postives = 58/87 (66.67%), Query Frame = 2
Query:  119 MGTKQAMTKFKEVRALRQFTLGKGKSAGRNSSGRITIFHRGGGSKRLQRRIDLKRTTSSI-GIVERVEYDPNRSSWIAPVRWIEGVQ 376
            M  + A+ K K V+AL +   GKG   GRN++GRIT+  RGGG K+  R +D KR    +  IVER+EYDPNR+++IA +++ +G Q
Sbjct:   18 MVDRSALYKGKPVKALTEGKRGKG---GRNNTGRITVRFRGGGHKQAYRNVDFKRGKEDVPAIVERLEYDPNRTAFIALIKYQDGEQ 101          
BLAST of CV712666 vs. ExPASy Swiss-Prot
Match: RL2_ORITB (50S ribosomal protein L2 OS=Orientia tsutsugamushi (strain Boryong) GN=rplB PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.763e-12
Identity = 37/72 (51.39%), Postives = 50/72 (69.44%), Query Frame = 2
Query:  158 RALRQFTLGKGKSAGRNSSGRITIFHRGGGSKRLQRRIDLKRTTSSI-GIVERVEYDPNRSSWIAPVRWIEG 370
            R L++   G  K+ GRN+ GRITI+HRG G K+L R ID KR    I   VER+EYDPNR+++IA +R+ +G
Sbjct:   28 RPLKKLAKGISKTGGRNNLGRITIWHRGKGHKQLYRMIDFKRRVFDIYATVERIEYDPNRTAFIALIRYDDG 99          
BLAST of CV712666 vs. ExPASy Swiss-Prot
Match: RL2_DINSH (50S ribosomal protein L2 OS=Dinoroseobacter shibae (strain DFL 12) GN=rplB PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.763e-12
Identity = 35/74 (47.30%), Postives = 51/74 (68.92%), Query Frame = 2
Query:  158 RALRQFTLGKGKSAGRNSSGRITIFHRGGGSKRLQRRIDLKRTTSSI-GIVERVEYDPNRSSWIAPVRWIEGVQ 376
            R ++  T G  K  GRN++GRIT+  RGGG+KRL R +D KR    + G++ R+EYDPNR+++IA V + +G Q
Sbjct:   28 RPVKSLTEGLSKKGGRNNTGRITMRRRGGGAKRLYRIVDFKRRKFDVEGVITRIEYDPNRTAFIALVTYTDGEQ 101          
The following BLAST results are available for this feature:
BLAST of CV712666 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 90
Match NameE-valueIdentityDescription
RL2_RICCK7.913e-1350.0050S ribosomal protein L2 OS=Rickettsia canadensis ... [more]
RL2_JANSC7.913e-1351.3550S ribosomal protein L2 OS=Jannaschia sp. (strain... [more]
RL2_WOLPP1.033e-1246.5150S ribosomal protein L2 OS=Wolbachia pipientis su... [more]
RL2_RHOSK1.350e-1247.2250S ribosomal protein L2 OS=Rhodobacter sphaeroide... [more]
RL2_RHOS51.350e-1247.2250S ribosomal protein L2 OS=Rhodobacter sphaeroide... [more]
RL2_RHOS41.350e-1247.2250S ribosomal protein L2 OS=Rhodobacter sphaeroide... [more]
RL2_RHOS11.350e-1247.2250S ribosomal protein L2 OS=Rhodobacter sphaeroide... [more]
RL2_NITHX1.350e-1245.9850S ribosomal protein L2 OS=Nitrobacter hamburgens... [more]
RL2_ORITB1.763e-1251.3950S ribosomal protein L2 OS=Orientia tsutsugamushi... [more]
RL2_DINSH1.763e-1247.3050S ribosomal protein L2 OS=Dinoroseobacter shibae... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001L16_r Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001L16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712666 ID=CV712666; Name=CV712666; organism=Citrus sinensis; type=EST; length=759bp
GCTGCAGGAATTCTGGCACGAGGGATCTTTTTACAAGGGGCTTTTGCTTG
TATTAAAGTTTTTTTTTTTTTTTAATGTGTATGTTATAGGAGTAGGGGCT
AATTTGTAAGGGAATCGAATGGGTACGAAACAGGCAATGACAAAATTTAA
AGAGGTGAGAGCACTGAGACAATTCACTTTGGGTAAAGGGAAGTCCGCTG
GTAGGAACTCCTCGGGGCGTATTACGATTTTTCACCGGGGGGGTGGTTCG
AAGCGATTGCAGCGAAGAATTGATCTGAAACGTACCACTTCCTCTATTGG
TATTGTTGAAAGGGTTGAATATGACCCTAATCGTTCCTCTTGGATCGCTC
CTGTACGATGGATCGAAGGGGTTCAGATGCAGCAGAAGAAGTGCAACACC
ATAGAAGAGTTTGATCCGCCGCCGCTACGTAAGTTCTTCGAACCTACCAC
CGCCGCCATCAGCGGCAAATTTTCGTTCTCTTTCCTCTCCCAGAATGTGG
ATCAAAGAAAGGTAGCTTCCTTCTCACCTGGACTGATGGCGGCTGATGTA
AATGCCATGGTTAGCATTCCTAGTTCGAAGAGCCCCTTTACGACTACTAG
TGATAGCAAGGGTGCAGGAGGAAAAAGTAAAATAACTTGCGCAAAGGATG
TCTTCTTTTCTGCATTCTCATCTCCAATGGCCAGTGGAGAGACTGCCTCC
CTTTCCTACCCTAGGATGGCAGTAGCTGGAGCGAAGCCCACTTTCTTCGC
CCCTCGAAT
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