CV712666

Overview
NameCV712666
Unique NameCV712666
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length759
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV712666 vs. ExPASy Swiss-Prot
Match: RL2_ANAMF (50S ribosomal protein L2 OS=Anaplasma marginale (strain Florida) GN=rplB PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.927e-12
Identity = 39/91 (42.86%), Postives = 60/91 (65.93%), Query Frame = 2
Query:  101 NL*GNRMGTKQAMTKFKEVRALRQFTLGKGKSAGRNSSGRITIFHRGGGSKRLQRRIDLKRTTSSI-GIVERVEYDPNRSSWIAPVRWIEG 370
            +L G  M  + A+ + K  ++L    +G+  S GRN+ G IT+ HRGGG KRL R +DLKR    +  +V+R+EYDPNR++++A VR+ +G
Sbjct:   12 SLRGTVMVNRVALWRGKPEKSL---VVGRVSSGGRNAHGVITVRHRGGGHKRLHRVVDLKRNKDGVQAVVQRLEYDPNRTAFLALVRYEDG 99          
BLAST of CV712666 vs. ExPASy Swiss-Prot
Match: RL2_RHOPB (50S ribosomal protein L2 OS=Rhodopseudomonas palustris (strain BisB18) GN=rplB PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 5.129e-12
Identity = 38/87 (43.68%), Postives = 58/87 (66.67%), Query Frame = 2
Query:  119 MGTKQAMTKFKEVRALRQFTLGKGKSAGRNSSGRITIFHRGGGSKRLQRRIDLKRTTSSI-GIVERVEYDPNRSSWIAPVRWIEGVQ 376
            M  + A+ K K V++L   T GK  + GRN++GRI +  RGGG K+  R +D KRT   +  +VER+EYDPNR+++IA +++ +G Q
Sbjct:   18 MVDRSALYKGKPVKSL---TEGKHSAGGRNNTGRIVVRFRGGGHKQTYRIVDFKRTKVDMPAVVERLEYDPNRTAFIALIKYTDGTQ 101          
BLAST of CV712666 vs. ExPASy Swiss-Prot
Match: RL2_ROSDO (50S ribosomal protein L2 OS=Roseobacter denitrificans (strain ATCC 33942 / OCh 114) GN=rplB PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.699e-12
Identity = 35/74 (47.30%), Postives = 51/74 (68.92%), Query Frame = 2
Query:  158 RALRQFTLGKGKSAGRNSSGRITIFHRGGGSKRLQRRIDLKRTTSSI-GIVERVEYDPNRSSWIAPVRWIEGVQ 376
            R ++  T G  K  GRN++GRIT+  +GGG+KRL R +D KR    +   VER+EYDPNR+++IA V++ +G Q
Sbjct:   28 RPVKALTEGLSKHGGRNNTGRITMRRKGGGAKRLYRIVDFKRNKMDVAATVERIEYDPNRTAFIALVKYEDGEQ 101          
BLAST of CV712666 vs. ExPASy Swiss-Prot
Match: RL2_RHOP5 (50S ribosomal protein L2 OS=Rhodopseudomonas palustris (strain BisA53) GN=rplB PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.699e-12
Identity = 39/87 (44.83%), Postives = 57/87 (65.52%), Query Frame = 2
Query:  119 MGTKQAMTKFKEVRALRQFTLGKGKSAGRNSSGRITIFHRGGGSKRLQRRIDLKRTTSSI-GIVERVEYDPNRSSWIAPVRWIEGVQ 376
            M  + A+ K K V+ L   T GK  + GRN++GRIT+  RGGG K+  R +D KRT   +   VER+EYDPNR+++IA +++ +G Q
Sbjct:   18 MVDRSALYKGKPVKVL---TEGKHSNGGRNNTGRITVRFRGGGHKKTYRIVDFKRTKVDVPAKVERLEYDPNRTAFIALIKYADGEQ 101          
BLAST of CV712666 vs. ExPASy Swiss-Prot
Match: RL2_ORITI (50S ribosomal protein L2 OS=Orientia tsutsugamushi (strain Ikeda) GN=rplB PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.699e-12
Identity = 36/72 (50.00%), Postives = 50/72 (69.44%), Query Frame = 2
Query:  158 RALRQFTLGKGKSAGRNSSGRITIFHRGGGSKRLQRRIDLKRTTSSI-GIVERVEYDPNRSSWIAPVRWIEG 370
            R L++   G  K+ GRN+ GRITI+HRG G K+L R ID KR    I   VER+EYDPNR+++IA +++ +G
Sbjct:   28 RPLKKLAKGITKTGGRNNLGRITIWHRGKGHKQLYRMIDFKRRVFDIYATVERIEYDPNRTAFIALIKYDDG 99          
BLAST of CV712666 vs. ExPASy Swiss-Prot
Match: RL2_METNO (50S ribosomal protein L2 OS=Methylobacterium nodulans (strain ORS2060 / LMG 21967) GN=rplB PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.699e-12
Identity = 40/85 (47.06%), Postives = 53/85 (62.35%), Query Frame = 2
Query:  128 KQAMTKFKEVRALRQFTLGKGKSAGRNSSGRITIFHRGGGSKRLQRRIDLKRT--TSSIGIVERVEYDPNRSSWIAPVRWIEGVQ 376
            +  + K K V+AL   T GK  S GRN+ GR+T+  RGGG KR  R +D KR      +G VER+EYDPNR+++IA V +  G Q
Sbjct:   21 RSELYKGKPVKAL---TEGKISSGGRNNLGRVTVRFRGGGHKRTLRNVDFKRREHAGKVGTVERIEYDPNRTAFIALVTYEGGAQ 102          
BLAST of CV712666 vs. ExPASy Swiss-Prot
Match: RL2_BRAJA (50S ribosomal protein L2 OS=Bradyrhizobium japonicum GN=rplB PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.699e-12
Identity = 41/87 (47.13%), Postives = 57/87 (65.52%), Query Frame = 2
Query:  119 MGTKQAMTKFKEVRALRQFTLGKGKSAGRNSSGRITIFHRGGGSKRLQRRIDLKR-TTSSIGIVERVEYDPNRSSWIAPVRWIEGVQ 376
            M  + A+ K K V+AL   T GK  S GRN++GRIT+  RGGG K+  R +D KR    +   VER+EYDPNR+++IA V++ +G Q
Sbjct:   18 MVDRSALYKGKPVKAL---TEGKHSSGGRNNTGRITVRFRGGGHKQTLRIVDFKRDKVDAPATVERLEYDPNRTAFIALVKYEDGTQ 101          
BLAST of CV712666 vs. ExPASy Swiss-Prot
Match: RL2_RHOPT (50S ribosomal protein L2 OS=Rhodopseudomonas palustris (strain TIE-1) GN=rplB PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 8.749e-12
Identity = 39/87 (44.83%), Postives = 57/87 (65.52%), Query Frame = 2
Query:  119 MGTKQAMTKFKEVRALRQFTLGKGKSAGRNSSGRITIFHRGGGSKRLQRRIDLKRTTSSI-GIVERVEYDPNRSSWIAPVRWIEGVQ 376
            M  + A+ K K V+ L   T GK  + GRN++GRIT+  RGGG K+  R +D KRT   +   VER+EYDPNR+++IA +++ +G Q
Sbjct:   18 MVDRSALYKGKPVKRL---TEGKNSNGGRNNTGRITVRFRGGGHKQAYRLVDFKRTKVDVPAKVERLEYDPNRTAFIALIKYEDGEQ 101          
BLAST of CV712666 vs. ExPASy Swiss-Prot
Match: RL2_RHOPA (50S ribosomal protein L2 OS=Rhodopseudomonas palustris GN=rplB PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 8.749e-12
Identity = 39/87 (44.83%), Postives = 57/87 (65.52%), Query Frame = 2
Query:  119 MGTKQAMTKFKEVRALRQFTLGKGKSAGRNSSGRITIFHRGGGSKRLQRRIDLKRTTSSI-GIVERVEYDPNRSSWIAPVRWIEGVQ 376
            M  + A+ K K V+ L   T GK  + GRN++GRIT+  RGGG K+  R +D KRT   +   VER+EYDPNR+++IA +++ +G Q
Sbjct:   18 MVDRSALYKGKPVKRL---TEGKNSNGGRNNTGRITVRFRGGGHKQAYRLVDFKRTKVDVPAKVERLEYDPNRTAFIALIKYEDGEQ 101          
BLAST of CV712666 vs. ExPASy Swiss-Prot
Match: RL2_RHOP2 (50S ribosomal protein L2 OS=Rhodopseudomonas palustris (strain HaA2) GN=rplB PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 8.749e-12
Identity = 39/87 (44.83%), Postives = 57/87 (65.52%), Query Frame = 2
Query:  119 MGTKQAMTKFKEVRALRQFTLGKGKSAGRNSSGRITIFHRGGGSKRLQRRIDLKRTTSSI-GIVERVEYDPNRSSWIAPVRWIEGVQ 376
            M  + A+ K K V+ L   T GK  + GRN++GRIT+  RGGG K+  R +D KRT   +   VER+EYDPNR+++IA +++ +G Q
Sbjct:   18 MVDRSALYKGKPVKTL---TEGKHSNGGRNNTGRITVRFRGGGHKKTYRLVDFKRTKVDVPAKVERLEYDPNRTAFIALIKYEDGEQ 101          
The following BLAST results are available for this feature:
BLAST of CV712666 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 90
Match NameE-valueIdentityDescription
RL2_ANAMF3.927e-1242.8650S ribosomal protein L2 OS=Anaplasma marginale (s... [more]
RL2_RHOPB5.129e-1243.6850S ribosomal protein L2 OS=Rhodopseudomonas palus... [more]
RL2_ROSDO6.699e-1247.3050S ribosomal protein L2 OS=Roseobacter denitrific... [more]
RL2_RHOP56.699e-1244.8350S ribosomal protein L2 OS=Rhodopseudomonas palus... [more]
RL2_ORITI6.699e-1250.0050S ribosomal protein L2 OS=Orientia tsutsugamushi... [more]
RL2_METNO6.699e-1247.0650S ribosomal protein L2 OS=Methylobacterium nodul... [more]
RL2_BRAJA6.699e-1247.1350S ribosomal protein L2 OS=Bradyrhizobium japonic... [more]
RL2_RHOPT8.749e-1244.8350S ribosomal protein L2 OS=Rhodopseudomonas palus... [more]
RL2_RHOPA8.749e-1244.8350S ribosomal protein L2 OS=Rhodopseudomonas palus... [more]
RL2_RHOP28.749e-1244.8350S ribosomal protein L2 OS=Rhodopseudomonas palus... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001L16_r Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001L16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712666 ID=CV712666; Name=CV712666; organism=Citrus sinensis; type=EST; length=759bp
GCTGCAGGAATTCTGGCACGAGGGATCTTTTTACAAGGGGCTTTTGCTTG
TATTAAAGTTTTTTTTTTTTTTTAATGTGTATGTTATAGGAGTAGGGGCT
AATTTGTAAGGGAATCGAATGGGTACGAAACAGGCAATGACAAAATTTAA
AGAGGTGAGAGCACTGAGACAATTCACTTTGGGTAAAGGGAAGTCCGCTG
GTAGGAACTCCTCGGGGCGTATTACGATTTTTCACCGGGGGGGTGGTTCG
AAGCGATTGCAGCGAAGAATTGATCTGAAACGTACCACTTCCTCTATTGG
TATTGTTGAAAGGGTTGAATATGACCCTAATCGTTCCTCTTGGATCGCTC
CTGTACGATGGATCGAAGGGGTTCAGATGCAGCAGAAGAAGTGCAACACC
ATAGAAGAGTTTGATCCGCCGCCGCTACGTAAGTTCTTCGAACCTACCAC
CGCCGCCATCAGCGGCAAATTTTCGTTCTCTTTCCTCTCCCAGAATGTGG
ATCAAAGAAAGGTAGCTTCCTTCTCACCTGGACTGATGGCGGCTGATGTA
AATGCCATGGTTAGCATTCCTAGTTCGAAGAGCCCCTTTACGACTACTAG
TGATAGCAAGGGTGCAGGAGGAAAAAGTAAAATAACTTGCGCAAAGGATG
TCTTCTTTTCTGCATTCTCATCTCCAATGGCCAGTGGAGAGACTGCCTCC
CTTTCCTACCCTAGGATGGCAGTAGCTGGAGCGAAGCCCACTTTCTTCGC
CCCTCGAAT
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