CV712666

Overview
NameCV712666
Unique NameCV712666
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length759
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CV712666 vs. ExPASy Swiss-Prot
Match: RL2_METPB (50S ribosomal protein L2 OS=Methylobacterium populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001) GN=rplB PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.545e-11
Identity = 39/85 (45.88%), Postives = 55/85 (64.71%), Query Frame = 2 
Query:  128 KQAMTKFKEVRALRQFTLGKGKSAGRNSSGRITIFHRGGGSKRLQRRIDLKR--TTSSIGIVERVEYDPNRSSWIAPVRWIEGVQ 376
            ++ + K K V+AL   T GK  S GRN+ GRIT+  RGGG KR+ R +D KR    +    VER+EYDPNR+++IA + + +G Q
Sbjct:   21 RRELYKGKPVKAL---TEGKSSSGGRNNLGRITVRFRGGGHKRVLRNVDFKRRENLNVPATVERIEYDPNRTAFIALITFPDGKQ 102
[Close]
BLAST of CV712666 vs. ExPASy Swiss-Prot
Match: RL2_METEP (50S ribosomal protein L2 OS=Methylobacterium extorquens (strain PA1) GN=rplB PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.545e-11
Identity = 39/85 (45.88%), Postives = 55/85 (64.71%), Query Frame = 2 
Query:  128 KQAMTKFKEVRALRQFTLGKGKSAGRNSSGRITIFHRGGGSKRLQRRIDLKR--TTSSIGIVERVEYDPNRSSWIAPVRWIEGVQ 376
            ++ + K K V+AL   T GK  S GRN+ GRIT+  RGGG KR+ R +D KR    +    VER+EYDPNR+++IA + + +G Q
Sbjct:   21 RRELYKGKPVKAL---TEGKSSSGGRNNLGRITVRFRGGGHKRVLRNVDFKRRENLNVPATVERIEYDPNRTAFIALITFPDGKQ 102
[Close]
BLAST of CV712666 vs. ExPASy Swiss-Prot
Match: RL2_METC4 (50S ribosomal protein L2 OS=Methylobacterium chloromethanicum (strain CM4 / NCIMB 13688) GN=rplB PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.545e-11
Identity = 39/85 (45.88%), Postives = 55/85 (64.71%), Query Frame = 2 
Query:  128 KQAMTKFKEVRALRQFTLGKGKSAGRNSSGRITIFHRGGGSKRLQRRIDLKR--TTSSIGIVERVEYDPNRSSWIAPVRWIEGVQ 376
            ++ + K K V+AL   T GK  S GRN+ GRIT+  RGGG KR+ R +D KR    +    VER+EYDPNR+++IA + + +G Q
Sbjct:   21 RRELYKGKPVKAL---TEGKSSSGGRNNLGRITVRFRGGGHKRVLRNVDFKRRENLNVPATVERIEYDPNRTAFIALITFPDGKQ 102
[Close]
BLAST of CV712666 vs. ExPASy Swiss-Prot
Match: RL2_BRUSU (50S ribosomal protein L2 OS=Brucella suis GN=rplB PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.545e-11
Identity = 34/72 (47.22%), Postives = 49/72 (68.06%), Query Frame = 2 
Query:  158 RALRQFTLGKGKSAGRNSSGRITIFHRGGGSKRLQRRIDLK-RTTSSIGIVERVEYDPNRSSWIAPVRWIEG 370
            + ++  T G  K  GRN++GRIT+  +GGG KR  R ID K R    +G VER+EYDPNR+++IA +R+ +G
Sbjct:   28 KPVKSLTEGLSKKGGRNNTGRITVRFQGGGHKRSYRFIDFKRRKLDVVGTVERLEYDPNRTAFIALIRYTDG 99
[Close]
BLAST of CV712666 vs. ExPASy Swiss-Prot
Match: RL2_BRUO2 (50S ribosomal protein L2 OS=Brucella ovis (strain ATCC 25840 / 63/290 / NCTC 10512) GN=rplB PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.545e-11
Identity = 34/72 (47.22%), Postives = 49/72 (68.06%), Query Frame = 2 
Query:  158 RALRQFTLGKGKSAGRNSSGRITIFHRGGGSKRLQRRIDLK-RTTSSIGIVERVEYDPNRSSWIAPVRWIEG 370
            + ++  T G  K  GRN++GRIT+  +GGG KR  R ID K R    +G VER+EYDPNR+++IA +R+ +G
Sbjct:   28 KPVKSLTEGLSKKGGRNNTGRITVRFQGGGHKRSYRFIDFKRRKLDVVGTVERLEYDPNRTAFIALIRYTDG 99
[Close]
BLAST of CV712666 vs. ExPASy Swiss-Prot
Match: RL2_BRUME (50S ribosomal protein L2 OS=Brucella melitensis GN=rplB PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.545e-11
Identity = 34/72 (47.22%), Postives = 49/72 (68.06%), Query Frame = 2 
Query:  158 RALRQFTLGKGKSAGRNSSGRITIFHRGGGSKRLQRRIDLK-RTTSSIGIVERVEYDPNRSSWIAPVRWIEG 370
            + ++  T G  K  GRN++GRIT+  +GGG KR  R ID K R    +G VER+EYDPNR+++IA +R+ +G
Sbjct:   28 KPVKSLTEGLSKKGGRNNTGRITVRFQGGGHKRSYRFIDFKRRKLDVVGTVERLEYDPNRTAFIALIRYTDG 99
[Close]
BLAST of CV712666 vs. ExPASy Swiss-Prot
Match: RL2_BRUMB (50S ribosomal protein L2 OS=Brucella melitensis biotype 2 (strain ATCC 23457) GN=rplB PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.545e-11
Identity = 34/72 (47.22%), Postives = 49/72 (68.06%), Query Frame = 2 
Query:  158 RALRQFTLGKGKSAGRNSSGRITIFHRGGGSKRLQRRIDLK-RTTSSIGIVERVEYDPNRSSWIAPVRWIEG 370
            + ++  T G  K  GRN++GRIT+  +GGG KR  R ID K R    +G VER+EYDPNR+++IA +R+ +G
Sbjct:   28 KPVKSLTEGLSKKGGRNNTGRITVRFQGGGHKRSYRFIDFKRRKLDVVGTVERLEYDPNRTAFIALIRYTDG 99
[Close]
BLAST of CV712666 vs. ExPASy Swiss-Prot
Match: RL2_BRUAB (50S ribosomal protein L2 OS=Brucella abortus GN=rplB PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.545e-11
Identity = 34/72 (47.22%), Postives = 49/72 (68.06%), Query Frame = 2 
Query:  158 RALRQFTLGKGKSAGRNSSGRITIFHRGGGSKRLQRRIDLK-RTTSSIGIVERVEYDPNRSSWIAPVRWIEG 370
            + ++  T G  K  GRN++GRIT+  +GGG KR  R ID K R    +G VER+EYDPNR+++IA +R+ +G
Sbjct:   28 KPVKSLTEGLSKKGGRNNTGRITVRFQGGGHKRSYRFIDFKRRKLDVVGTVERLEYDPNRTAFIALIRYTDG 99
[Close]
BLAST of CV712666 vs. ExPASy Swiss-Prot
Match: RL2_BRUA2 (50S ribosomal protein L2 OS=Brucella abortus (strain 2308) GN=rplB PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.545e-11
Identity = 34/72 (47.22%), Postives = 49/72 (68.06%), Query Frame = 2 
Query:  158 RALRQFTLGKGKSAGRNSSGRITIFHRGGGSKRLQRRIDLK-RTTSSIGIVERVEYDPNRSSWIAPVRWIEG 370
            + ++  T G  K  GRN++GRIT+  +GGG KR  R ID K R    +G VER+EYDPNR+++IA +R+ +G
Sbjct:   28 KPVKSLTEGLSKKGGRNNTGRITVRFQGGGHKRSYRFIDFKRRKLDVVGTVERLEYDPNRTAFIALIRYTDG 99
[Close]
BLAST of CV712666 vs. ExPASy Swiss-Prot
Match: RL2_BRUA1 (50S ribosomal protein L2 OS=Brucella abortus (strain S19) GN=rplB PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.545e-11
Identity = 34/72 (47.22%), Postives = 49/72 (68.06%), Query Frame = 2 
Query:  158 RALRQFTLGKGKSAGRNSSGRITIFHRGGGSKRLQRRIDLK-RTTSSIGIVERVEYDPNRSSWIAPVRWIEG 370
            + ++  T G  K  GRN++GRIT+  +GGG KR  R ID K R    +G VER+EYDPNR+++IA +R+ +G
Sbjct:   28 KPVKSLTEGLSKKGGRNNTGRITVRFQGGGHKRSYRFIDFKRRKLDVVGTVERLEYDPNRTAFIALIRYTDG 99
The following BLAST results are available for this feature:
BLAST of CV712666 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 90
Match NameE-valueIdentityDescription
RL2_METPB2.545e-1145.8850S ribosomal protein L2 OS=Methylobacterium popul... [more]
RL2_METEP2.545e-1145.8850S ribosomal protein L2 OS=Methylobacterium extor... [more]
RL2_METC42.545e-1145.8850S ribosomal protein L2 OS=Methylobacterium chlor... [more]
RL2_BRUSU2.545e-1147.2250S ribosomal protein L2 OS=Brucella suis GN=rplB ... [more]
RL2_BRUO22.545e-1147.2250S ribosomal protein L2 OS=Brucella ovis (strain ... [more]
RL2_BRUME2.545e-1147.2250S ribosomal protein L2 OS=Brucella melitensis GN... [more]
RL2_BRUMB2.545e-1147.2250S ribosomal protein L2 OS=Brucella melitensis bi... [more]
RL2_BRUAB2.545e-1147.2250S ribosomal protein L2 OS=Brucella abortus GN=rp... [more]
RL2_BRUA22.545e-1147.2250S ribosomal protein L2 OS=Brucella abortus (stra... [more]
RL2_BRUA12.545e-1147.2250S ribosomal protein L2 OS=Brucella abortus (stra... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001L16_r Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001L16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712666 ID=CV712666; Name=CV712666; organism=Citrus sinensis; type=EST; length=759bp
GCTGCAGGAATTCTGGCACGAGGGATCTTTTTACAAGGGGCTTTTGCTTG
TATTAAAGTTTTTTTTTTTTTTTAATGTGTATGTTATAGGAGTAGGGGCT
AATTTGTAAGGGAATCGAATGGGTACGAAACAGGCAATGACAAAATTTAA
AGAGGTGAGAGCACTGAGACAATTCACTTTGGGTAAAGGGAAGTCCGCTG
GTAGGAACTCCTCGGGGCGTATTACGATTTTTCACCGGGGGGGTGGTTCG
AAGCGATTGCAGCGAAGAATTGATCTGAAACGTACCACTTCCTCTATTGG
TATTGTTGAAAGGGTTGAATATGACCCTAATCGTTCCTCTTGGATCGCTC
CTGTACGATGGATCGAAGGGGTTCAGATGCAGCAGAAGAAGTGCAACACC
ATAGAAGAGTTTGATCCGCCGCCGCTACGTAAGTTCTTCGAACCTACCAC
CGCCGCCATCAGCGGCAAATTTTCGTTCTCTTTCCTCTCCCAGAATGTGG
ATCAAAGAAAGGTAGCTTCCTTCTCACCTGGACTGATGGCGGCTGATGTA
AATGCCATGGTTAGCATTCCTAGTTCGAAGAGCCCCTTTACGACTACTAG
TGATAGCAAGGGTGCAGGAGGAAAAAGTAAAATAACTTGCGCAAAGGATG
TCTTCTTTTCTGCATTCTCATCTCCAATGGCCAGTGGAGAGACTGCCTCC
CTTTCCTACCCTAGGATGGCAGTAGCTGGAGCGAAGCCCACTTTCTTCGC
CCCTCGAAT
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