CV712666

Overview
NameCV712666
Unique NameCV712666
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length759
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV712666 vs. ExPASy Swiss-Prot
Match: RL2_BEII9 (50S ribosomal protein L2 OS=Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712) GN=rplB PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.545e-11
Identity = 34/71 (47.89%), Postives = 49/71 (69.01%), Query Frame = 2
Query:  158 RALRQFTLGKGKSAGRNSSGRITIFHRGGGSKRLQRRIDLKRTTSSI-GIVERVEYDPNRSSWIAPVRWIE 367
            + ++Q T GK  S GRN++GR+T+  RGGG K+  R ID KR    +   VER+EYDPNR+S+IA +R+ +
Sbjct:   28 KPVKQLTEGKSSSGGRNNNGRVTVRFRGGGHKQTYRIIDFKRRKLDMPAKVERIEYDPNRTSFIALIRYAD 98          
BLAST of CV712666 vs. ExPASy Swiss-Prot
Match: RL2_AGRT5 (50S ribosomal protein L2 OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=rplB PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.545e-11
Identity = 39/84 (46.43%), Postives = 54/84 (64.29%), Query Frame = 2
Query:  128 KQAMTKFKEVRALRQFTLGKGKSAGRNSSGRITIFHRGGGSKRLQRRIDLKRTTSSI-GIVERVEYDPNRSSWIAPVRWIEGVQ 376
            + ++ K K V+AL Q    KG   GRN+ GRIT+  +GGG KR  R +D KR    + G VER+EYDPNR+++IA V + +G Q
Sbjct:   21 RASLYKGKPVKALTQGLSSKG---GRNNQGRITVRFQGGGHKRTYRLVDFKRRKFDVEGTVERLEYDPNRTAFIALVTYTDGEQ 101          
BLAST of CV712666 vs. ExPASy Swiss-Prot
Match: RL2_RHILW (50S ribosomal protein L2 OS=Rhizobium leguminosarum bv. trifolii (strain WSM2304) GN=rplB PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.324e-11
Identity = 41/82 (50.00%), Postives = 52/82 (63.41%), Query Frame = 2
Query:  128 KQAMTKFKEVRALRQFTLGKGKSAGRNSSGRITIFHRGGGSKRLQRRIDLKRTTSSI-GIVERVEYDPNRSSWIAPVRWIEG 370
            + A+ K K V+AL   T G  KS GRN+ GRIT    GGG KR  R ID KR    + G VER+EYDPNR+++IA V + +G
Sbjct:   21 RSALYKGKPVKAL---TEGLTKSGGRNNLGRITARFIGGGHKRTYRLIDFKRRKFDVEGTVERIEYDPNRTAFIALVNYADG 99          
BLAST of CV712666 vs. ExPASy Swiss-Prot
Match: RL2_RHIL3 (50S ribosomal protein L2 OS=Rhizobium leguminosarum bv. viciae (strain 3841) GN=rplB PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.324e-11
Identity = 41/82 (50.00%), Postives = 52/82 (63.41%), Query Frame = 2
Query:  128 KQAMTKFKEVRALRQFTLGKGKSAGRNSSGRITIFHRGGGSKRLQRRIDLKRTTSSI-GIVERVEYDPNRSSWIAPVRWIEG 370
            + A+ K K V+AL   T G  KS GRN+ GRIT    GGG KR  R ID KR    + G VER+EYDPNR+++IA V + +G
Sbjct:   21 RSALYKGKPVKAL---TEGLTKSGGRNNLGRITARFIGGGHKRTYRLIDFKRRKFDVEGTVERIEYDPNRTAFIALVNYADG 99          
BLAST of CV712666 vs. ExPASy Swiss-Prot
Match: RL2_BRUSI (50S ribosomal protein L2 OS=Brucella suis (strain ATCC 23445 / NCTC 10510) GN=rplB PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.324e-11
Identity = 34/72 (47.22%), Postives = 49/72 (68.06%), Query Frame = 2
Query:  158 RALRQFTLGKGKSAGRNSSGRITIFHRGGGSKRLQRRIDLK-RTTSSIGIVERVEYDPNRSSWIAPVRWIEG 370
            + ++  T G  K  GRN++GRIT+  +GGG KR  R ID K R    +G VER+EYDPNR+++IA +R+ +G
Sbjct:   28 KPVKPLTEGLSKKGGRNNTGRITVRFQGGGHKRSYRFIDFKRRKLDVVGTVERLEYDPNRTAFIALIRYTDG 99          
BLAST of CV712666 vs. ExPASy Swiss-Prot
Match: RL2_BRUC2 (50S ribosomal protein L2 OS=Brucella canis (strain ATCC 23365 / NCTC 10854) GN=rplB PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.324e-11
Identity = 34/72 (47.22%), Postives = 49/72 (68.06%), Query Frame = 2
Query:  158 RALRQFTLGKGKSAGRNSSGRITIFHRGGGSKRLQRRIDLK-RTTSSIGIVERVEYDPNRSSWIAPVRWIEG 370
            + ++  T G  K  GRN++GRIT+  +GGG KR  R ID K R    +G VER+EYDPNR+++IA +R+ +G
Sbjct:   28 KPVKPLTEGLSKKGGRNNTGRITVRFQGGGHKRSYRFIDFKRRKLDVVGTVERLEYDPNRTAFIALIRYTDG 99          
BLAST of CV712666 vs. ExPASy Swiss-Prot
Match: RL2_OLICO (50S ribosomal protein L2 OS=Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5) GN=rplB PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.342e-11
Identity = 33/72 (45.83%), Postives = 50/72 (69.44%), Query Frame = 2
Query:  158 RALRQFTLGKGKSAGRNSSGRITIFHRGGGSKRLQRRIDLKRTTSSI-GIVERVEYDPNRSSWIAPVRWIEG 370
            + L++ T GK  + GR ++GRIT+  RGGG K+  R ID KRT   +   VER+EYDPNR+++IA +++ +G
Sbjct:   28 KPLKKLTEGKHSNGGRGNTGRITVRFRGGGHKQTYRLIDFKRTKVDVPATVERLEYDPNRTAFIALIKYADG 99          
BLAST of CV712666 vs. ExPASy Swiss-Prot
Match: RL2_GLUOX (50S ribosomal protein L2 OS=Gluconobacter oxydans GN=rplB PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.342e-11
Identity = 33/72 (45.83%), Postives = 49/72 (68.06%), Query Frame = 2
Query:  158 RALRQFTLGKGKSAGRNSSGRITIFHRGGGSKRLQRRIDLKRTTSSI-GIVERVEYDPNRSSWIAPVRWIEG 370
            + ++Q T GK KS GRN+ GR T+  RGGG K+  R +D KR    +   VER+EYDPNR+++IA +++ +G
Sbjct:   28 KPVKQLTEGKNKSGGRNNHGRTTVRFRGGGHKQSYRYVDFKRRKFDVAATVERLEYDPNRTAFIALIKYEDG 99          
BLAST of CV712666 vs. ExPASy Swiss-Prot
Match: RL2_AZOC5 (50S ribosomal protein L2 OS=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) GN=rplB PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.342e-11
Identity = 36/82 (43.90%), Postives = 53/82 (64.63%), Query Frame = 2
Query:  128 KQAMTKFKEVRALRQFTLGKGKSAGRNSSGRITIFHRGGGSKRLQRRIDLKRTTSSI-GIVERVEYDPNRSSWIAPVRWIEG 370
            +  + K K V+ L   T GK  S GRN++GRIT+  RGGG K+  R +D KR    +   VER+EYDPNR+++IA +++ +G
Sbjct:   21 RSGLYKGKPVKTL---TEGKSSSGGRNNNGRITVRFRGGGHKQTYRLVDFKRAKRDVSATVERLEYDPNRTAFIALIKYEDG 99          
BLAST of CV712666 vs. ExPASy Swiss-Prot
Match: RL2_PARL1 (50S ribosomal protein L2 OS=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) GN=rplB PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.671e-11
Identity = 39/82 (47.56%), Postives = 53/82 (64.63%), Query Frame = 2
Query:  128 KQAMTKFKEVRALRQFTLGKGKSAGRNSSGRITIFHRGGGSKRLQRRIDLKRTTSSI-GIVERVEYDPNRSSWIAPVRWIEG 370
            + A+ K K V+ L   T G  KS GRN+ GRIT+  RGGG KR  R +D KR    +   VER+EYDPNR+++IA V++ +G
Sbjct:   21 RSALYKGKPVKDL---TEGLTKSGGRNNHGRITVRFRGGGHKRSYRTVDFKRRRYDVPATVERLEYDPNRTAFIALVKYEDG 99          
The following BLAST results are available for this feature:
BLAST of CV712666 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 90
Match NameE-valueIdentityDescription
RL2_BEII92.545e-1147.8950S ribosomal protein L2 OS=Beijerinckia indica su... [more]
RL2_AGRT52.545e-1146.4350S ribosomal protein L2 OS=Agrobacterium tumefaci... [more]
RL2_RHILW3.324e-1150.0050S ribosomal protein L2 OS=Rhizobium leguminosaru... [more]
RL2_RHIL33.324e-1150.0050S ribosomal protein L2 OS=Rhizobium leguminosaru... [more]
RL2_BRUSI3.324e-1147.2250S ribosomal protein L2 OS=Brucella suis (strain ... [more]
RL2_BRUC23.324e-1147.2250S ribosomal protein L2 OS=Brucella canis (strain... [more]
RL2_OLICO4.342e-1145.8350S ribosomal protein L2 OS=Oligotropha carboxidov... [more]
RL2_GLUOX4.342e-1145.8350S ribosomal protein L2 OS=Gluconobacter oxydans ... [more]
RL2_AZOC54.342e-1143.9050S ribosomal protein L2 OS=Azorhizobium caulinoda... [more]
RL2_PARL15.671e-1147.5650S ribosomal protein L2 OS=Parvibaculum lavamenti... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001L16_r Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001L16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712666 ID=CV712666; Name=CV712666; organism=Citrus sinensis; type=EST; length=759bp
GCTGCAGGAATTCTGGCACGAGGGATCTTTTTACAAGGGGCTTTTGCTTG
TATTAAAGTTTTTTTTTTTTTTTAATGTGTATGTTATAGGAGTAGGGGCT
AATTTGTAAGGGAATCGAATGGGTACGAAACAGGCAATGACAAAATTTAA
AGAGGTGAGAGCACTGAGACAATTCACTTTGGGTAAAGGGAAGTCCGCTG
GTAGGAACTCCTCGGGGCGTATTACGATTTTTCACCGGGGGGGTGGTTCG
AAGCGATTGCAGCGAAGAATTGATCTGAAACGTACCACTTCCTCTATTGG
TATTGTTGAAAGGGTTGAATATGACCCTAATCGTTCCTCTTGGATCGCTC
CTGTACGATGGATCGAAGGGGTTCAGATGCAGCAGAAGAAGTGCAACACC
ATAGAAGAGTTTGATCCGCCGCCGCTACGTAAGTTCTTCGAACCTACCAC
CGCCGCCATCAGCGGCAAATTTTCGTTCTCTTTCCTCTCCCAGAATGTGG
ATCAAAGAAAGGTAGCTTCCTTCTCACCTGGACTGATGGCGGCTGATGTA
AATGCCATGGTTAGCATTCCTAGTTCGAAGAGCCCCTTTACGACTACTAG
TGATAGCAAGGGTGCAGGAGGAAAAAGTAAAATAACTTGCGCAAAGGATG
TCTTCTTTTCTGCATTCTCATCTCCAATGGCCAGTGGAGAGACTGCCTCC
CTTTCCTACCCTAGGATGGCAGTAGCTGGAGCGAAGCCCACTTTCTTCGC
CCCTCGAAT
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