CV712666

Overview
NameCV712666
Unique NameCV712666
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length759
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV712666 vs. ExPASy Swiss-Prot
Match: RL2_BRASO (50S ribosomal protein L2 OS=Bradyrhizobium sp. (strain ORS278) GN=rplB PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.671e-11
Identity = 39/85 (45.88%), Postives = 55/85 (64.71%), Query Frame = 2
Query:  119 MGTKQAMTKFKEVRALRQFTLGKGKSAGRNSSGRITIFHRGGGSKRLQRRIDLKRTTSSI-GIVERVEYDPNRSSWIAPVRWIEG 370
            M  + A+ K K V+AL   T GK  S GRN++GRIT+   GGG K+  R +D KR    +   VER+EYDPNR+++IA V++ +G
Sbjct:   18 MVDRSALYKGKPVKAL---TEGKQSSGGRNNTGRITVRFLGGGHKQSYRTVDFKRDKVDVPATVERLEYDPNRTAFIALVKYQDG 99          
BLAST of CV712666 vs. ExPASy Swiss-Prot
Match: RL2_RHIEC (50S ribosomal protein L2 OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=rplB PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.406e-11
Identity = 41/84 (48.81%), Postives = 53/84 (63.10%), Query Frame = 2
Query:  128 KQAMTKFKEVRALRQFTLGKGKSAGRNSSGRITIFHRGGGSKRLQRRIDLKRTTSSI-GIVERVEYDPNRSSWIAPVRWIEGVQ 376
            + ++ K K V+AL   T G  KS GRN+ GRIT    GGG KR  R +D KR    I G VER+EYDPNR+++IA V + +G Q
Sbjct:   21 RSSLYKGKPVKAL---TEGLTKSGGRNNLGRITARFIGGGHKRSYRLVDFKRRKFDIEGTVERIEYDPNRTAFIALVTYSDGEQ 101          
BLAST of CV712666 vs. ExPASy Swiss-Prot
Match: RL2_RHIE6 (50S ribosomal protein L2 OS=Rhizobium etli (strain CIAT 652) GN=rplB PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.406e-11
Identity = 40/84 (47.62%), Postives = 53/84 (63.10%), Query Frame = 2
Query:  128 KQAMTKFKEVRALRQFTLGKGKSAGRNSSGRITIFHRGGGSKRLQRRIDLKRTTSSI-GIVERVEYDPNRSSWIAPVRWIEGVQ 376
            + ++ K K V+AL   T G  KS GRN+ GRIT    GGG KR  R +D KR    + G VER+EYDPNR+++IA V + +G Q
Sbjct:   21 RSSLYKGKPVKAL---TEGLTKSGGRNNLGRITARFIGGGHKRSYRLVDFKRRKFDVEGTVERIEYDPNRTAFIALVSYADGEQ 101          
BLAST of CV712666 vs. ExPASy Swiss-Prot
Match: RL2_MARAV (50S ribosomal protein L2 OS=Marinobacter aquaeolei (strain ATCC 700491 / DSM 11845 / VT8) GN=rplB PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.406e-11
Identity = 35/63 (55.56%), Postives = 44/63 (69.84%), Query Frame = 2
Query:  185 KGKSAGRNSSGRITIFHRGGGSKRLQRRIDLKRTTSSI-GIVERVEYDPNRSSWIAPVRWIEG 370
            K KS GRN+ GRIT  H GGG K+  R ID KRT   I  ++ER+EYDPNRS+ IA V++ +G
Sbjct:   37 KSKSGGRNNVGRITTRHIGGGHKQHYRVIDFKRTKDGIPAVIERLEYDPNRSAHIALVKYADG 99          
BLAST of CV712666 vs. ExPASy Swiss-Prot
Match: RL2_FINM2 (50S ribosomal protein L2 OS=Finegoldia magna (strain ATCC 29328) GN=rplB PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.406e-11
Identity = 34/69 (49.28%), Postives = 47/69 (68.12%), Query Frame = 2
Query:  167 RQFTLGKGKSAGRNSSGRITIFHRGGGSKRLQRRIDLKRTTSSI-GIVERVEYDPNRSSWIAPVRWIEG 370
            +  T+   KS GRNS GR+TI HRGGG+KR  R ID KR    I  +V+ +EYDPNR++ IA +++ +G
Sbjct:   31 KSLTVSLNKSGGRNSYGRVTIRHRGGGAKRKYRIIDFKRNKDGIKAVVKSIEYDPNRTANIALLQYEDG 99          
BLAST of CV712666 vs. ExPASy Swiss-Prot
Match: RK2_CHAVU (50S ribosomal protein L2, chloroplastic OS=Chara vulgaris GN=rpl2 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.406e-11
Identity = 39/88 (44.32%), Postives = 55/88 (62.50%), Query Frame = 2
Query:  122 GTK-QAMTKFKEVRALR---QFTLGKGKSAGRNSSGRITIFHRGGGSKRLQRRIDLKRTTSSI-GIVERVEYDPNRSSWIAPVRWIEG 370
            GT+ ++++ +K +  L+     T GK    GRN+ G IT  HRGGG KRL R+ID +R    I GIV+ +EYDPNR+S I  V + +G
Sbjct:   12 GTRNRSVSDYKNISCLKPEKSLTSGKMSKKGRNNQGIITSRHRGGGHKRLYRKIDFRRKKIGIYGIVKTIEYDPNRNSHICLVNYEDG 99          
BLAST of CV712666 vs. ExPASy Swiss-Prot
Match: RL2_SYNFM (50S ribosomal protein L2 OS=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) GN=rplB PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.673e-11
Identity = 37/88 (42.05%), Postives = 49/88 (55.68%), Query Frame = 2
Query:  110 GNRMGTKQAMTKFKEVRALRQFTLGKGKSAGRNSSGRITIFHRGGGSKRLQRRIDLKRTTSSI-GIVERVEYDPNRSSWIAPVRWIEG 370
            G R  T     +   V   +       +S GRN+SGR+T +HRGGG KR  R ID KR   +I   V  +EYDPNRSS IA +++ +G
Sbjct:   12 GRRFQTYATFEELSNVEPEKSLLEPLRRSGGRNASGRVTSWHRGGGHKRRYRIIDFKRNKENIPATVASIEYDPNRSSHIALLKYADG 99          
BLAST of CV712666 vs. ExPASy Swiss-Prot
Match: RL2_PHOPR (50S ribosomal protein L2 OS=Photobacterium profundum GN=rplB PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.673e-11
Identity = 36/63 (57.14%), Postives = 45/63 (71.43%), Query Frame = 2
Query:  185 KGKSAGRNSSGRITIFHRGGGSKRLQRRIDLKRTTSSI-GIVERVEYDPNRSSWIAPVRWIEG 370
            K KS GRN++GRIT+ H GGG+K+  R ID KRT   I   VER+EYDPNRS+ IA V + +G
Sbjct:   37 KSKSGGRNNNGRITVRHIGGGNKQHYRLIDFKRTKDGIPAKVERLEYDPNRSANIALVLYADG 99          
BLAST of CV712666 vs. ExPASy Swiss-Prot
Match: RL2_BRASB (50S ribosomal protein L2 OS=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) GN=rplB PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.673e-11
Identity = 39/85 (45.88%), Postives = 55/85 (64.71%), Query Frame = 2
Query:  119 MGTKQAMTKFKEVRALRQFTLGKGKSAGRNSSGRITIFHRGGGSKRLQRRIDLKRTTSSI-GIVERVEYDPNRSSWIAPVRWIEG 370
            M  + A+ K K V+AL   T GK  S GRN++GRIT+   GGG K+  R +D KR    +   VER+EYDPNR+++IA V++ +G
Sbjct:   18 MVDRSALYKGKPVKAL---TEGKLSSGGRNNTGRITVRFLGGGHKQSYRMVDFKRDKVDVPATVERLEYDPNRTAFIALVKYQDG 99          
BLAST of CV712666 vs. ExPASy Swiss-Prot
Match: RL2_AGRRK (50S ribosomal protein L2 OS=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) GN=rplB PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.673e-11
Identity = 36/84 (42.86%), Postives = 55/84 (65.48%), Query Frame = 2
Query:  128 KQAMTKFKEVRALRQFTLGKGKSAGRNSSGRITIFHRGGGSKRLQRRIDLKRTTSSI-GIVERVEYDPNRSSWIAPVRWIEGVQ 376
            + ++ K K V++L +    KG   GRN++GRIT+  +GGG KR  R +D KR    +   VER+EYDPNR+++IA V++ +G Q
Sbjct:   21 RSSLYKGKPVKSLTEGLSSKG---GRNNTGRITVRFQGGGHKRTYRLVDFKRRKFDVEATVERIEYDPNRTAYIALVKYADGDQ 101          
The following BLAST results are available for this feature:
BLAST of CV712666 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 90
Match NameE-valueIdentityDescription
RL2_BRASO5.671e-1145.8850S ribosomal protein L2 OS=Bradyrhizobium sp. (st... [more]
RL2_RHIEC7.406e-1148.8150S ribosomal protein L2 OS=Rhizobium etli (strain... [more]
RL2_RHIE67.406e-1147.6250S ribosomal protein L2 OS=Rhizobium etli (strain... [more]
RL2_MARAV7.406e-1155.5650S ribosomal protein L2 OS=Marinobacter aquaeolei... [more]
RL2_FINM27.406e-1149.2850S ribosomal protein L2 OS=Finegoldia magna (stra... [more]
RK2_CHAVU7.406e-1144.3250S ribosomal protein L2, chloroplastic OS=Chara v... [more]
RL2_SYNFM9.673e-1142.0550S ribosomal protein L2 OS=Syntrophobacter fumaro... [more]
RL2_PHOPR9.673e-1157.1450S ribosomal protein L2 OS=Photobacterium profund... [more]
RL2_BRASB9.673e-1145.8850S ribosomal protein L2 OS=Bradyrhizobium sp. (st... [more]
RL2_AGRRK9.673e-1142.8650S ribosomal protein L2 OS=Agrobacterium radiobac... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001L16_r Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001L16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712666 ID=CV712666; Name=CV712666; organism=Citrus sinensis; type=EST; length=759bp
GCTGCAGGAATTCTGGCACGAGGGATCTTTTTACAAGGGGCTTTTGCTTG
TATTAAAGTTTTTTTTTTTTTTTAATGTGTATGTTATAGGAGTAGGGGCT
AATTTGTAAGGGAATCGAATGGGTACGAAACAGGCAATGACAAAATTTAA
AGAGGTGAGAGCACTGAGACAATTCACTTTGGGTAAAGGGAAGTCCGCTG
GTAGGAACTCCTCGGGGCGTATTACGATTTTTCACCGGGGGGGTGGTTCG
AAGCGATTGCAGCGAAGAATTGATCTGAAACGTACCACTTCCTCTATTGG
TATTGTTGAAAGGGTTGAATATGACCCTAATCGTTCCTCTTGGATCGCTC
CTGTACGATGGATCGAAGGGGTTCAGATGCAGCAGAAGAAGTGCAACACC
ATAGAAGAGTTTGATCCGCCGCCGCTACGTAAGTTCTTCGAACCTACCAC
CGCCGCCATCAGCGGCAAATTTTCGTTCTCTTTCCTCTCCCAGAATGTGG
ATCAAAGAAAGGTAGCTTCCTTCTCACCTGGACTGATGGCGGCTGATGTA
AATGCCATGGTTAGCATTCCTAGTTCGAAGAGCCCCTTTACGACTACTAG
TGATAGCAAGGGTGCAGGAGGAAAAAGTAAAATAACTTGCGCAAAGGATG
TCTTCTTTTCTGCATTCTCATCTCCAATGGCCAGTGGAGAGACTGCCTCC
CTTTCCTACCCTAGGATGGCAGTAGCTGGAGCGAAGCCCACTTTCTTCGC
CCCTCGAAT
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