CV712624

Overview
NameCV712624
Unique NameCV712624
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length688
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV712624 vs. ExPASy Swiss-Prot
Match: RS3_BOVIN (40S ribosomal protein S3 OS=Bos taurus GN=RPS3 PE=2 SV=1)

HSP 1 Score: 224.557 bits (571), Expect = 3.996e-58
Identity = 114/139 (82.01%), Postives = 120/139 (86.33%), Query Frame = -2
Query:  265 FPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEV 681
            FPE SVELYAEKV  RGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEV+VSGKLR QRAKSMKF DG MI SG PVN Y+D+AVRHVLLRQGVLGIKVKIML WD  GK GP  PLPD V+I   K+E+
Sbjct:   79 FPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQGVLGIKVKIMLPWDPTGKIGPKKPLPDHVSIVEPKDEI 217          
BLAST of CV712624 vs. ExPASy Swiss-Prot
Match: RS3_AMBME (40S ribosomal protein S3 OS=Ambystoma mexicanum GN=RPS3 PE=2 SV=1)

HSP 1 Score: 223.787 bits (569), Expect = 6.816e-58
Identity = 113/139 (81.29%), Postives = 120/139 (86.33%), Query Frame = -2
Query:  265 FPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEV 681
            FPE SVELYAEKV  RGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESG+KGCEV+VSGKLR QRAKSMKF DG MI SG PVN Y+D+AVRHVLLRQGVLGIKVKIML WD  GK GP  PLPD V+I   K+E+
Sbjct:   79 FPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGSKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQGVLGIKVKIMLAWDPSGKIGPKKPLPDHVSIVEPKDEI 217          
BLAST of CV712624 vs. ExPASy Swiss-Prot
Match: RS3_PONAB (40S ribosomal protein S3 OS=Pongo abelii GN=RPS3 PE=2 SV=1)

HSP 1 Score: 223.016 bits (567), Expect = 1.163e-57
Identity = 113/139 (81.29%), Postives = 120/139 (86.33%), Query Frame = -2
Query:  265 FPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEV 681
            FPE SVELYAE+V  RGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEV+VSGKLR QRAKSMKF DG MI SG PVN Y+D+AVRHVLLRQGVLGIKVKIML WD  GK GP  PLPD V+I   K+E+
Sbjct:   79 FPEGSVELYAEEVATRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQGVLGIKVKIMLPWDPTGKIGPKKPLPDHVSIVEPKDEI 217          
BLAST of CV712624 vs. ExPASy Swiss-Prot
Match: RS3_MANSE (40S ribosomal protein S3 OS=Manduca sexta GN=RpS3 PE=2 SV=1)

HSP 1 Score: 216.853 bits (551), Expect = 8.333e-56
Identity = 110/147 (74.83%), Postives = 121/147 (82.31%), Query Frame = -2
Query:  238 PENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEVYVAPATATS 678
            PE SVELYAEKV  RGLCAIAQAESLRYKL+GGLAVRRACYGVLRFIMESGA+GCEV+VSGKLR QRAKSMKF DG MI SG P N+Y+++A RHVLLRQGVLGIKVKIML WDQ+GK GP  P PD + +   K+E   AP   TS
Sbjct:   81 PEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKVKIMLPWDQQGKNGPKKPQPDHILVTEPKDE--PAPLEPTS 225          
BLAST of CV712624 vs. ExPASy Swiss-Prot
Match: RS3_DROME (40S ribosomal protein S3 OS=Drosophila melanogaster GN=RpS3 PE=1 SV=1)

HSP 1 Score: 211.075 bits (536), Expect = 4.572e-54
Identity = 107/153 (69.93%), Postives = 121/153 (79.08%), Query Frame = -2
Query:  226 FPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVT-IHPLKEEVYVAPATATSIELP 681
            F    +ELYAEKV  RGLCAIAQAESLRYKL GGLAVRRACYGVLR+IMESGAKGCEV+VSGKLR QRAKSMKF DG MI SG P N+Y+++A RHVLLRQGVLGIKVK+ML +D K K GP  PLPD V+ + P +E++Y  P T   I  P
Sbjct:   81 FETGRIELYAEKVAARGLCAIAQAESLRYKLTGGLAVRRACYGVLRYIMESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVETATRHVLLRQGVLGIKVKVMLPYDPKNKIGPKKPLPDNVSVVEPKEEKIYETPETEYKIPPP 233          
BLAST of CV712624 vs. ExPASy Swiss-Prot
Match: RS3_CAEEL (40S ribosomal protein S3 OS=Caenorhabditis elegans GN=rps-3 PE=1 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 1.921e-52
Identity = 105/139 (75.54%), Postives = 116/139 (83.45%), Query Frame = -2
Query:  265 FPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEV 681
            F E SVELYAEKV+NRGLCA+AQ ESLRYKL+GGLAVRRACYGVLRFIMESGA+G EVIVSGKLR QRAK+MKF DG MI SG PVN+YI  AVRHV LRQGV+GIKVKIML +D +G+ GP   LPD V I   +EEV
Sbjct:   81 FEEGSVELYAEKVSNRGLCAVAQCESLRYKLVGGLAVRRACYGVLRFIMESGAQGVEVIVSGKLRGQRAKAMKFVDGLMIHSGHPVNDYIQQAVRHVQLRQGVIGIKVKIMLPYDPRGQNGPRNALPDHVQIVEPQEEV 219          
BLAST of CV712624 vs. ExPASy Swiss-Prot
Match: RS3_SCHPO (40S ribosomal protein S3 OS=Schizosaccharomyces pombe GN=rps3 PE=1 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 5.784e-49
Identity = 102/147 (69.39%), Postives = 119/147 (80.95%), Query Frame = -2
Query:  247 KFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTI-HPLKEEVYVAPAT 684
            KF EN+VELYAEKV NRGLCA+AQ ESLRYKLL GLAVRRA YGVLR++ME+GAKGCEV++SGKLRA RAKSMKF DG+MI SGQP  ++IDSA RHVLLRQGVLG+KVKIML  + K +Q  +  LPD+V +  P +EE    P T
Sbjct:   80 KFAENTVELYAEKVQNRGLCAVAQCESLRYKLLAGLAVRRAAYGVLRYVMEAGAKGCEVVISGKLRAARAKSMKFADGFMIHSGQPAVDFIDSATRHVLLRQGVLGVKVKIMLP-EPKTRQKKS--LPDIVVVLDPKEEEPITKPYT 223          
BLAST of CV712624 vs. ExPASy Swiss-Prot
Match: RS3_YEAST (40S ribosomal protein S3 OS=Saccharomyces cerevisiae GN=RPS3 PE=1 SV=5)

HSP 1 Score: 182.57 bits (462), Expect = 1.741e-45
Identity = 93/146 (63.70%), Postives = 119/146 (81.51%), Query Frame = -2
Query:  250 KFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVT-IHPLKEEVYVAPA 684
            K+   ++ LYAE+V +RGL A+AQAES+++KLL GLA+RRA YGV+R++MESGAKGCEV+VSGKLRA RAK+MKF DG++I SGQPVN++ID+A RHVL+RQGVLGIKVKIM +   K + GP   LPD VT I P +EE  +AP+
Sbjct:   78 KYAPGTIVLYAERVQDRGLSAVAQAESMKFKLLNGLAIRRAAYGVVRYVMESGAKGCEVVVSGKLRAARAKAMKFADGFLIHSGQPVNDFIDTATRHVLMRQGVLGIKVKIMRD-PAKSRTGPKA-LPDAVTIIEPKEEEPILAPS 221          
BLAST of CV712624 vs. ExPASy Swiss-Prot
Match: RS3_DICDI (40S ribosomal protein S3 OS=Dictyostelium discoideum GN=rps3 PE=2 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 4.015e-42
Identity = 88/134 (65.67%), Postives = 103/134 (76.87%), Query Frame = -2
Query:  286 FPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLEWDQKGK--QGPTTPLPDLVTI 681
            F E +V L+AEK+ NRGLCA+AQAESL+ KLL GL VR+ACY ++  IM  GAKGCEVIVSGKLRAQRAKSMKF+DGYMI SGQP  ++ID A RHVLLRQG LG+KV IML +D+  K       P PD+V I
Sbjct:   82 FKEGTVVLFAEKILNRGLCAVAQAESLKLKLLAGLPVRKACYAIVHQIMTRGAKGCEVIVSGKLRAQRAKSMKFRDGYMIKSGQPSKDFIDFACRHVLLRQGTLGVKVAIMLPYDETRKIHGACNIPQPDVVVI 215          
BLAST of CV712624 vs. ExPASy Swiss-Prot
Match: RS3_ENCCU (40S ribosomal protein S3 OS=Encephalitozoon cuniculi GN=RPS3 PE=1 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.441e-31
Identity = 66/131 (50.38%), Postives = 93/131 (70.99%), Query Frame = -2
Query:  286 PENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTI 678
            P+ SVE+  EKV+ +GLCA+ QA  +R K+LGG+  RRA    L+    + A+GC++IVSGKL+ QRAKS+KF+DG +I SG  V +YI++    V  +QGV+GI+V+IML +D +G  GP  PLPD +TI
Sbjct:   91 PDESVEIVVEKVHEKGLCALIQANFIREKILGGVQYRRAVNMALKTARHAKAQGCQIIVSGKLKGQRAKSVKFQDGVLIHSGDAVKDYINTGYATVETKQGVIGIQVRIMLPYDPEGVLGPNYPLPDRITI 221          
The following BLAST results are available for this feature:
BLAST of CV712624 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 57
Match NameE-valueIdentityDescription
RS3_BOVIN3.996e-5882.0140S ribosomal protein S3 OS=Bos taurus GN=RPS3 PE=... [more]
RS3_AMBME6.816e-5881.2940S ribosomal protein S3 OS=Ambystoma mexicanum GN... [more]
RS3_PONAB1.163e-5781.2940S ribosomal protein S3 OS=Pongo abelii GN=RPS3 P... [more]
RS3_MANSE8.333e-5674.8340S ribosomal protein S3 OS=Manduca sexta GN=RpS3 ... [more]
RS3_DROME4.572e-5469.9340S ribosomal protein S3 OS=Drosophila melanogaste... [more]
RS3_CAEEL1.921e-5275.5440S ribosomal protein S3 OS=Caenorhabditis elegans... [more]
RS3_SCHPO5.784e-4969.3940S ribosomal protein S3 OS=Schizosaccharomyces po... [more]
RS3_YEAST1.741e-4563.7040S ribosomal protein S3 OS=Saccharomyces cerevisi... [more]
RS3_DICDI4.015e-4265.6740S ribosomal protein S3 OS=Dictyostelium discoide... [more]
RS3_ENCCU2.441e-3150.3840S ribosomal protein S3 OS=Encephalitozoon cunicu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001K15_f Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001K15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712624 ID=CV712624; Name=CV712624; organism=Citrus sinensis; type=EST; length=688bp
GAAGCTTACGCATAAGATTTTAGCAAAGCTTCGCTCAAGTAAACGAACAA
AACTGAAACCAAATATTCTAATAACCAAAATTGTAGACAAGACAACATCA
TGCACAGTACCCAGTAGTATTCTCTTGCTCCTCCATAGATAATTAAAAGA
TAAAAGAAAACATAAAGCTATTACTAAATCATTACATCAGACATTGGACA
CAACTCAACTCAGGGTTTATGCTACTGGAAGCTCAATACTGGTTGCCGTC
GCTGGTGCAACATACACTTCTTCCTTCAGAGGGTGGATGGTAACCAGATC
AGGCAAAGGTGTTGTTGGCCCTTGCTTGCCCTTTTGATCCCATTCAAGCA
TGATCTTCACCTTGATACCAAGCACACCCTGTCTAAGAAGAACATGTCTT
ACAGCTGAGTCGATGTATTCATTCACAGGTTGACCTGAGGATATCATGTA
CCCATCTTTAAATTTCATGGACTTTGCACGTTGAGCCCGGAGCTTTCCAC
TCACAATAACCTCACATCCCTTGGCACCACTCTCCATGATAAATCTCAGC
ACACCATAGCATGCCCTTCGAACAGCGAGACCTCCAAGAAGCTTGTAACG
CAGAGACTCAGCCTGAGCAATGGCACAGAGACCCCTATTGTTAACTTTCT
CAGCATATAGCTCCACACTGTTCTCTGGAAACTTGCCT
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