CV712624

Overview
NameCV712624
Unique NameCV712624
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length688
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV712624 vs. ExPASy Swiss-Prot
Match: RS3_META3 (30S ribosomal protein S3P OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rps3p PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.030e-13
Identity = 45/142 (31.69%), Postives = 73/142 (51.41%), Query Frame = -2
Query:  259 KFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEVYV 684
            K+  N  ++  +++ +  L A   A+ +   L  G+  RR  +  +R +M  GAKG  VIVSGKL  +R+++ K+ +GYM   G+P  E +D   +   L+ GV+G+ VKIM          P   LPD + I  +  +  V
Sbjct:   71 KYGVNKPQIEVKQIESPDLDAGVVAQKIASSLERGMHFRRVAHSAIRRVMAQGAKGVVVIVSGKLTGERSRTEKYMEGYMKHCGEPSEELVDQCHKIAKLKLGVVGVTVKIM---------PPEITLPDEIVIKDVPSKTTV 203          
BLAST of CV712624 vs. ExPASy Swiss-Prot
Match: RS3_METB6 (30S ribosomal protein S3P OS=Methanoregula boonei (strain 6A8) GN=rps3p PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.296e-13
Identity = 38/107 (35.51%), Postives = 63/107 (58.88%), Query Frame = -2
Query:  349 SVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQGVLGIKVKIM 669
            S ++  ++V N    A   AE L   L  G   R+A   ++R +M+SGA GCEV+++GKL   RA++ KF +GY+   G+P N  ++      + + GV+G++VKI+
Sbjct:   77 SPQIEVQQVQNPSFNAQIMAERLANALERGWYFRKAGSSIMRRVMDSGALGCEVVIAGKLTGARARTQKFTEGYIKHCGEPSNTIVEKGYAIAIKKLGVIGVQVKIV 183          
BLAST of CV712624 vs. ExPASy Swiss-Prot
Match: RS3_METM5 (30S ribosomal protein S3P OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rps3p PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.998e-13
Identity = 43/126 (34.13%), Postives = 66/126 (52.38%), Query Frame = -2
Query:  286 ELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTI 663
            ++  ++V N  L        +   L  G+  RR  +  +R +M SGAKG  +IVSGKL  +R+++ KF DGYM   G+P    ++ + +   L+ GV+G+ VKIM          P   LPD +TI
Sbjct:   78 QIEVKQVENPDLDPAIVGHKIASSLERGMHFRRTAHSAIRRVMGSGAKGVSIIVSGKLSGERSRTEKFMDGYMKHCGEPAEALVNKSHQLAKLKLGVVGVTVKIM---------KPDVTLPDEITI 194          
BLAST of CV712624 vs. ExPASy Swiss-Prot
Match: RS3_METBF (30S ribosomal protein S3P OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rps3p PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.916e-13
Identity = 47/133 (35.34%), Postives = 67/133 (50.38%), Query Frame = -2
Query:  265 ELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEV 663
            ++ A++V    L A   A  L   +  G   R+A +  LR +M +GA GCEV++SGKL   R++  KF DGY+  SG PV+E +D      + + G LG KV+I+          P   LPD  T     E V
Sbjct:   79 QIDAQEVKKPELNAQMMASRLAASIERGWYFRKAGHNTLRAVMNAGALGCEVVISGKLTGARSRVEKFVDGYIKHSGNPVDEVVDEGFAVAIKKLGTLGCKVRII---------QPGVVLPDSYTTTEPSEPV 202          
BLAST of CV712624 vs. ExPASy Swiss-Prot
Match: RS3_METAC (30S ribosomal protein S3P OS=Methanosarcina acetivorans GN=rps3p PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.916e-13
Identity = 41/112 (36.61%), Postives = 62/112 (55.36%), Query Frame = -2
Query:  349 KFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQGVLGIKVKIM 684
            K+   + ++ A++V    L A   A  L   +  G   R+A +  LR +M +GA GCEV++SGKL   R++  KF DGY+  SG PV E +D      + + G LG KV+I+
Sbjct:   72 KYSLENPQIDAQEVKRPELNAQMMASRLAASIERGWYFRKAGHNTLRAVMNAGALGCEVVISGKLTGARSRVEKFVDGYIKHSGNPVEEVVDEGFAVAVKKLGTLGCKVRII 183          
BLAST of CV712624 vs. ExPASy Swiss-Prot
Match: RS3_UNCMA (30S ribosomal protein S3P OS=Uncultured methanogenic archaeon RC-I GN=rps3p PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.114e-13
Identity = 50/147 (34.01%), Postives = 73/147 (49.66%), Query Frame = -2
Query:  244 KFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEVYVAPATA 684
            +F  ++ ++  ++V    L A   A  L   L  G   R+A    L+ IM+SGA GCEVI++GKL   R +  KF  GY+   G+PV E +D        + G++G+KV+IM          P   LPD +TI   +     APA A
Sbjct:   72 RFKMDNPQIDVQEVKKPELNAQMMATRLANALERGWYFRKAGQSTLQRIMDSGAMGCEVIIAGKLTGARKRREKFIAGYIKHCGKPVEELVDVGYARAKKKLGIIGVKVRIM---------PPEAVLPDQITIEAAQA---AAPAPA 206          
BLAST of CV712624 vs. ExPASy Swiss-Prot
Match: RS3_METM7 (30S ribosomal protein S3P OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rps3p PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.114e-13
Identity = 42/133 (31.58%), Postives = 70/133 (52.63%), Query Frame = -2
Query:  286 KFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTI 684
            ++  N+ ++  ++V +  L        +   L  G+  R+  +  +R +M SGAKG  +IVSGKL  +R+++ KF DGYM   G+P    ++ + +   L+ GV+G+ VKIM          P   LPD +TI
Sbjct:   71 EYAVNNPQIEVKQVESPDLDPAIVGHKIASSLERGMHFRKTAHSAIRRVMGSGAKGVSIIVSGKLSGERSRTEKFMDGYMKHCGEPAEALVNKSHQLAKLKLGVVGVTVKIM---------KPDVSLPDEITI 194          
BLAST of CV712624 vs. ExPASy Swiss-Prot
Match: RS3_METS3 (30S ribosomal protein S3P OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=rps3p PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.679e-13
Identity = 43/106 (40.57%), Postives = 58/106 (54.72%), Query Frame = -2
Query:  265 GLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEV 582
            G+  RR  Y  +R IM +GA+G EV +SGK+R  R+   KF +GY+   G+P    ++     V L+ GVLGI V+IM          P T LPD V I P K E+
Sbjct:  105 GMHFRRVAYSTIRRIMGAGAQGVEVTISGKIRGSRSAVAKFVEGYIKKCGEPSIRLVEEGFATVQLKPGVLGIYVRIM---------PPETVLPDSVEILPPKMEI 201          
BLAST of CV712624 vs. ExPASy Swiss-Prot
Match: RS3_METMA (30S ribosomal protein S3P OS=Methanosarcina mazei GN=rps3p PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.679e-13
Identity = 40/112 (35.71%), Postives = 62/112 (55.36%), Query Frame = -2
Query:  349 KFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQGVLGIKVKIM 684
            K+   + ++ A++V    L A   A  L   +  G   R+A +  +R +M +GA GCEV++SGKL   R++  KF DGY+  SG PV E +D      + + G LG KV+I+
Sbjct:   72 KYNLENPQIDAQEVKKPELNAQMMASRLAASIERGWYFRKAGHNTIRAVMNAGALGCEVVISGKLTGARSRVEKFVDGYIKHSGHPVEEVVDEGFAVAIKKLGTLGCKVRII 183          
BLAST of CV712624 vs. ExPASy Swiss-Prot
Match: RS3_METM6 (30S ribosomal protein S3P OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=rps3p PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.679e-13
Identity = 42/133 (31.58%), Postives = 70/133 (52.63%), Query Frame = -2
Query:  286 KFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTI 684
            ++  N+ ++  ++V +  L        +   L  G+  R+  +  +R +M SGAKG  +IVSGKL  +R+++ KF DGYM   G+P    ++ + +   L+ GV+G+ VKIM          P   LPD +TI
Sbjct:   71 EYAVNNPQIEVKQVESPDLDPAIVGHKIASSLERGMHFRKTAHSAIRRVMGSGAKGVAIIVSGKLSGERSRTEKFMDGYMKHCGEPAEALVNKSHQLAKLKLGVVGVTVKIM---------KPDVSLPDEITI 194          
The following BLAST results are available for this feature:
BLAST of CV712624 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 57
Match NameE-valueIdentityDescription
RS3_META31.030e-1331.6930S ribosomal protein S3P OS=Methanococcus aeolicu... [more]
RS3_METB62.296e-1335.5130S ribosomal protein S3P OS=Methanoregula boonei ... [more]
RS3_METM52.998e-1334.1330S ribosomal protein S3P OS=Methanococcus maripal... [more]
RS3_METBF3.916e-1335.3430S ribosomal protein S3P OS=Methanosarcina barker... [more]
RS3_METAC3.916e-1336.6130S ribosomal protein S3P OS=Methanosarcina acetiv... [more]
RS3_UNCMA5.114e-1334.0130S ribosomal protein S3P OS=Uncultured methanogen... [more]
RS3_METM75.114e-1331.5830S ribosomal protein S3P OS=Methanococcus maripal... [more]
RS3_METS36.679e-1340.5730S ribosomal protein S3P OS=Methanobrevibacter sm... [more]
RS3_METMA6.679e-1335.7130S ribosomal protein S3P OS=Methanosarcina mazei ... [more]
RS3_METM66.679e-1331.5830S ribosomal protein S3P OS=Methanococcus maripal... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS08_0001K15_f Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001K15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712624 ID=CV712624; Name=CV712624; organism=Citrus sinensis; type=EST; length=688bp
GAAGCTTACGCATAAGATTTTAGCAAAGCTTCGCTCAAGTAAACGAACAA
AACTGAAACCAAATATTCTAATAACCAAAATTGTAGACAAGACAACATCA
TGCACAGTACCCAGTAGTATTCTCTTGCTCCTCCATAGATAATTAAAAGA
TAAAAGAAAACATAAAGCTATTACTAAATCATTACATCAGACATTGGACA
CAACTCAACTCAGGGTTTATGCTACTGGAAGCTCAATACTGGTTGCCGTC
GCTGGTGCAACATACACTTCTTCCTTCAGAGGGTGGATGGTAACCAGATC
AGGCAAAGGTGTTGTTGGCCCTTGCTTGCCCTTTTGATCCCATTCAAGCA
TGATCTTCACCTTGATACCAAGCACACCCTGTCTAAGAAGAACATGTCTT
ACAGCTGAGTCGATGTATTCATTCACAGGTTGACCTGAGGATATCATGTA
CCCATCTTTAAATTTCATGGACTTTGCACGTTGAGCCCGGAGCTTTCCAC
TCACAATAACCTCACATCCCTTGGCACCACTCTCCATGATAAATCTCAGC
ACACCATAGCATGCCCTTCGAACAGCGAGACCTCCAAGAAGCTTGTAACG
CAGAGACTCAGCCTGAGCAATGGCACAGAGACCCCTATTGTTAACTTTCT
CAGCATATAGCTCCACACTGTTCTCTGGAAACTTGCCT
back to top