CV712624
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CV712624 vs. ExPASy Swiss-Prot
Match: RS3_META3 (30S ribosomal protein S3P OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rps3p PE=3 SV=1) HSP 1 Score: 77.0258 bits (188), Expect = 1.030e-13 Identity = 45/142 (31.69%), Postives = 73/142 (51.41%), Query Frame = -2 Query: 259 KFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEVYV 684 K+ N ++ +++ + L A A+ + L G+ RR + +R +M GAKG VIVSGKL +R+++ K+ +GYM G+P E +D + L+ GV+G+ VKIM P LPD + I + + V Sbjct: 71 KYGVNKPQIEVKQIESPDLDAGVVAQKIASSLERGMHFRRVAHSAIRRVMAQGAKGVVVIVSGKLTGERSRTEKYMEGYMKHCGEPSEELVDQCHKIAKLKLGVVGVTVKIM---------PPEITLPDEIVIKDVPSKTTV 203
BLAST of CV712624 vs. ExPASy Swiss-Prot
Match: RS3_METB6 (30S ribosomal protein S3P OS=Methanoregula boonei (strain 6A8) GN=rps3p PE=3 SV=1) HSP 1 Score: 75.8702 bits (185), Expect = 2.296e-13 Identity = 38/107 (35.51%), Postives = 63/107 (58.88%), Query Frame = -2 Query: 349 SVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQGVLGIKVKIM 669 S ++ ++V N A AE L L G R+A ++R +M+SGA GCEV+++GKL RA++ KF +GY+ G+P N ++ + + GV+G++VKI+ Sbjct: 77 SPQIEVQQVQNPSFNAQIMAERLANALERGWYFRKAGSSIMRRVMDSGALGCEVVIAGKLTGARARTQKFTEGYIKHCGEPSNTIVEKGYAIAIKKLGVIGVQVKIV 183
BLAST of CV712624 vs. ExPASy Swiss-Prot
Match: RS3_METM5 (30S ribosomal protein S3P OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rps3p PE=3 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 2.998e-13 Identity = 43/126 (34.13%), Postives = 66/126 (52.38%), Query Frame = -2 Query: 286 ELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTI 663 ++ ++V N L + L G+ RR + +R +M SGAKG +IVSGKL +R+++ KF DGYM G+P ++ + + L+ GV+G+ VKIM P LPD +TI Sbjct: 78 QIEVKQVENPDLDPAIVGHKIASSLERGMHFRRTAHSAIRRVMGSGAKGVSIIVSGKLSGERSRTEKFMDGYMKHCGEPAEALVNKSHQLAKLKLGVVGVTVKIM---------KPDVTLPDEITI 194
BLAST of CV712624 vs. ExPASy Swiss-Prot
Match: RS3_METBF (30S ribosomal protein S3P OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rps3p PE=3 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 3.916e-13 Identity = 47/133 (35.34%), Postives = 67/133 (50.38%), Query Frame = -2 Query: 265 ELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEV 663 ++ A++V L A A L + G R+A + LR +M +GA GCEV++SGKL R++ KF DGY+ SG PV+E +D + + G LG KV+I+ P LPD T E V Sbjct: 79 QIDAQEVKKPELNAQMMASRLAASIERGWYFRKAGHNTLRAVMNAGALGCEVVISGKLTGARSRVEKFVDGYIKHSGNPVDEVVDEGFAVAIKKLGTLGCKVRII---------QPGVVLPDSYTTTEPSEPV 202
BLAST of CV712624 vs. ExPASy Swiss-Prot
Match: RS3_METAC (30S ribosomal protein S3P OS=Methanosarcina acetivorans GN=rps3p PE=3 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 3.916e-13 Identity = 41/112 (36.61%), Postives = 62/112 (55.36%), Query Frame = -2 Query: 349 KFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQGVLGIKVKIM 684 K+ + ++ A++V L A A L + G R+A + LR +M +GA GCEV++SGKL R++ KF DGY+ SG PV E +D + + G LG KV+I+ Sbjct: 72 KYSLENPQIDAQEVKRPELNAQMMASRLAASIERGWYFRKAGHNTLRAVMNAGALGCEVVISGKLTGARSRVEKFVDGYIKHSGNPVEEVVDEGFAVAVKKLGTLGCKVRII 183
BLAST of CV712624 vs. ExPASy Swiss-Prot
Match: RS3_UNCMA (30S ribosomal protein S3P OS=Uncultured methanogenic archaeon RC-I GN=rps3p PE=3 SV=1) HSP 1 Score: 74.7146 bits (182), Expect = 5.114e-13 Identity = 50/147 (34.01%), Postives = 73/147 (49.66%), Query Frame = -2 Query: 244 KFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEVYVAPATA 684 +F ++ ++ ++V L A A L L G R+A L+ IM+SGA GCEVI++GKL R + KF GY+ G+PV E +D + G++G+KV+IM P LPD +TI + APA A Sbjct: 72 RFKMDNPQIDVQEVKKPELNAQMMATRLANALERGWYFRKAGQSTLQRIMDSGAMGCEVIIAGKLTGARKRREKFIAGYIKHCGKPVEELVDVGYARAKKKLGIIGVKVRIM---------PPEAVLPDQITIEAAQA---AAPAPA 206
BLAST of CV712624 vs. ExPASy Swiss-Prot
Match: RS3_METM7 (30S ribosomal protein S3P OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rps3p PE=3 SV=1) HSP 1 Score: 74.7146 bits (182), Expect = 5.114e-13 Identity = 42/133 (31.58%), Postives = 70/133 (52.63%), Query Frame = -2 Query: 286 KFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTI 684 ++ N+ ++ ++V + L + L G+ R+ + +R +M SGAKG +IVSGKL +R+++ KF DGYM G+P ++ + + L+ GV+G+ VKIM P LPD +TI Sbjct: 71 EYAVNNPQIEVKQVESPDLDPAIVGHKIASSLERGMHFRKTAHSAIRRVMGSGAKGVSIIVSGKLSGERSRTEKFMDGYMKHCGEPAEALVNKSHQLAKLKLGVVGVTVKIM---------KPDVSLPDEITI 194
BLAST of CV712624 vs. ExPASy Swiss-Prot
Match: RS3_METS3 (30S ribosomal protein S3P OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=rps3p PE=3 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 6.679e-13 Identity = 43/106 (40.57%), Postives = 58/106 (54.72%), Query Frame = -2 Query: 265 GLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEV 582 G+ RR Y +R IM +GA+G EV +SGK+R R+ KF +GY+ G+P ++ V L+ GVLGI V+IM P T LPD V I P K E+ Sbjct: 105 GMHFRRVAYSTIRRIMGAGAQGVEVTISGKIRGSRSAVAKFVEGYIKKCGEPSIRLVEEGFATVQLKPGVLGIYVRIM---------PPETVLPDSVEILPPKMEI 201
BLAST of CV712624 vs. ExPASy Swiss-Prot
Match: RS3_METMA (30S ribosomal protein S3P OS=Methanosarcina mazei GN=rps3p PE=3 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 6.679e-13 Identity = 40/112 (35.71%), Postives = 62/112 (55.36%), Query Frame = -2 Query: 349 KFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQGVLGIKVKIM 684 K+ + ++ A++V L A A L + G R+A + +R +M +GA GCEV++SGKL R++ KF DGY+ SG PV E +D + + G LG KV+I+ Sbjct: 72 KYNLENPQIDAQEVKKPELNAQMMASRLAASIERGWYFRKAGHNTIRAVMNAGALGCEVVISGKLTGARSRVEKFVDGYIKHSGHPVEEVVDEGFAVAIKKLGTLGCKVRII 183
BLAST of CV712624 vs. ExPASy Swiss-Prot
Match: RS3_METM6 (30S ribosomal protein S3P OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=rps3p PE=3 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 6.679e-13 Identity = 42/133 (31.58%), Postives = 70/133 (52.63%), Query Frame = -2 Query: 286 KFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTI 684 ++ N+ ++ ++V + L + L G+ R+ + +R +M SGAKG +IVSGKL +R+++ KF DGYM G+P ++ + + L+ GV+G+ VKIM P LPD +TI Sbjct: 71 EYAVNNPQIEVKQVESPDLDPAIVGHKIASSLERGMHFRKTAHSAIRRVMGSGAKGVAIIVSGKLSGERSRTEKFMDGYMKHCGEPAEALVNKSHQLAKLKLGVVGVTVKIM---------KPDVSLPDEITI 194 The following BLAST results are available for this feature:
BLAST of CV712624 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 57
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Sequences
The
following sequences are available for this feature:
EST sequence >CV712624 ID=CV712624; Name=CV712624; organism=Citrus sinensis; type=EST; length=688bpback to top |